Wall clock time and date at job start Tue Mar 31 2020 12:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.50699 * 109.47145 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00030 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99779 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00096 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00083 * 179.97438 * 16 14 13 19 19 C 1.53001 * 109.47037 * 89.99958 * 18 16 14 20 20 C 1.52996 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.35902 * 117.00139 * 179.97438 * 21 20 19 23 23 C 1.38732 * 120.05254 * 359.72604 * 22 21 20 24 24 C 1.38151 * 119.94018 * 179.74415 * 23 22 21 25 25 C 1.38268 * 120.05540 * 0.50778 * 24 23 22 26 26 C 1.38258 * 120.11013 * 359.76913 * 25 24 23 27 27 C 1.38138 * 120.06171 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 32 32 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 33 33 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 34 34 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 35 35 H 1.08997 * 109.47255 * 89.99897 * 17 16 14 36 36 H 1.09002 * 109.47107 * 210.00124 * 17 16 14 37 37 H 1.09002 * 109.47066 * 329.99677 * 17 16 14 38 38 H 1.09001 * 109.47421 * 210.00305 * 18 16 14 39 39 H 1.09005 * 109.46932 * 330.00316 * 18 16 14 40 40 H 1.09001 * 109.47298 * 300.00421 * 19 18 16 41 41 H 1.09005 * 109.46967 * 60.00380 * 19 18 16 42 42 H 1.09001 * 109.47162 * 300.00251 * 20 19 18 43 43 H 1.08996 * 109.47663 * 60.00223 * 20 19 18 44 44 H 1.07998 * 120.03180 * 359.97438 * 23 22 21 45 45 H 1.07997 * 119.97107 * 180.27923 * 24 23 22 46 46 H 1.07998 * 119.94136 * 179.74602 * 25 24 23 47 47 H 1.08008 * 119.96871 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.03611 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5217 3.5557 15 8 2.8697 -1.6983 3.4696 16 7 2.7287 0.1203 4.7324 17 6 2.3886 1.5415 4.8365 18 6 3.2201 -0.6032 5.9076 19 6 4.7459 -0.5062 5.9651 20 6 5.2592 -1.2623 7.1921 21 8 6.6843 -1.1713 7.2461 22 6 7.3034 -1.7935 8.2835 23 6 6.5543 -2.4729 9.2333 24 6 7.1865 -3.1091 10.2840 25 6 8.5639 -3.0603 10.3954 26 6 9.3122 -2.3790 9.4533 27 6 8.6853 -1.7457 8.3978 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.9111 -0.5221 -4.4375 32 1 2.9174 -1.1205 1.0286 33 1 2.7589 1.0461 2.1182 34 1 1.0871 0.6161 2.5525 35 1 1.3394 1.6447 5.1132 36 1 3.0128 2.0097 5.5975 37 1 2.5606 2.0276 3.8761 38 1 2.7938 -0.1636 6.8094 39 1 2.9249 -1.6502 5.8393 40 1 5.1722 -0.9458 5.0633 41 1 5.0411 0.5409 6.0334 42 1 4.8329 -0.8231 8.0941 43 1 4.9640 -2.3093 7.1235 44 1 5.4782 -2.5075 9.1492 45 1 6.6042 -3.6419 11.0212 46 1 9.0559 -3.5548 11.2198 47 1 10.3879 -2.3420 9.5428 48 1 9.2702 -1.2133 7.6624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602859731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:00 Heat of formation + Delta-G solvation = -37.148168 kcal Electronic energy + Delta-G solvation = -25793.513586 eV Core-core repulsion = 22042.245611 eV Total energy + Delta-G solvation = -3751.267975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43756 -39.79912 -37.82747 -36.26708 -35.57475 -33.18986 -32.36523 -31.32368 -30.24195 -29.81903 -27.44192 -26.66104 -25.30929 -24.44767 -23.12451 -22.43501 -21.54014 -19.94952 -19.23610 -18.50416 -17.25463 -16.76093 -16.59874 -16.32524 -16.16699 -15.89369 -15.68651 -15.02258 -14.73286 -14.18123 -13.99038 -13.84019 -13.75752 -13.53531 -13.30053 -13.01983 -12.81857 -12.75106 -12.64551 -12.33854 -12.16907 -11.94309 -11.89354 -11.85912 -11.54473 -11.26726 -11.10165 -10.93368 -10.88811 -10.66717 -10.12984 -9.62164 -9.46915 -9.36016 -9.04204 -8.78115 -8.61870 -8.53657 -7.54455 -6.09803 -4.10103 0.98435 1.10871 2.62772 2.84041 3.10618 3.25539 3.33059 3.36898 3.44988 4.36906 4.42689 4.47175 4.52366 4.67651 4.70921 4.77224 4.84687 4.92054 4.99847 5.03391 5.05676 5.13665 5.15584 5.23847 5.26407 5.32189 5.37234 5.49469 5.64953 5.68436 5.73342 5.75903 5.87944 5.98664 6.05681 6.18234 6.32785 6.39729 6.43681 6.49519 6.65153 6.74585 7.10836 7.28632 7.35500 7.54667 7.87535 8.27594 8.37921 8.59781 8.96105 9.51184 11.03158 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.001879 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.502536 B =14894.464407 C =15454.462307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.183 3.817 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.297 1.297 12 N -0.663 5.663 13 C 0.042 3.958 14 C 0.514 3.486 15 O -0.517 6.517 16 N -0.626 5.626 17 C 0.078 3.922 18 C 0.122 3.878 19 C -0.136 4.136 20 C 0.064 3.936 21 O -0.313 6.313 22 C 0.133 3.867 23 C -0.210 4.210 24 C -0.081 4.081 25 C -0.163 4.163 26 C -0.081 4.081 27 C -0.154 4.154 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.350 0.650 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.128 0.872 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 3.560 29.785 30.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.225 1.225 12 N -0.296 5.296 13 C -0.090 4.090 14 C 0.303 3.697 15 O -0.391 6.391 16 N -0.362 5.362 17 C -0.065 4.065 18 C -0.001 4.001 19 C -0.174 4.174 20 C -0.011 4.011 21 O -0.227 6.227 22 C 0.087 3.913 23 C -0.229 4.229 24 C -0.099 4.099 25 C -0.181 4.181 26 C -0.099 4.099 27 C -0.173 4.173 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.169 0.831 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.146 0.854 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.269 2.775 29.504 30.513 hybrid contribution -0.087 1.372 -0.273 1.402 sum 7.182 4.148 29.231 30.385 Atomic orbital electron populations 1.22085 0.98592 1.01242 0.97638 1.19575 0.91862 0.92895 0.88243 0.98091 1.21082 1.32366 1.13922 0.88437 0.90171 1.24939 0.95728 0.96753 0.95717 1.69893 1.45376 1.40248 0.97919 0.86788 0.80710 0.83482 0.76743 1.20484 1.19437 1.22509 1.60297 1.34301 1.31065 1.03986 1.21888 1.01180 0.94975 0.90998 1.21034 0.77056 0.87666 0.83984 1.90694 1.48578 1.15850 1.83938 1.47876 1.67176 1.11065 1.10078 1.21813 1.00644 0.80758 1.03313 1.21178 0.92075 0.99000 0.87875 1.21925 0.96287 1.01349 0.97888 1.22723 0.78277 1.01070 0.99059 1.86081 1.21823 1.70428 1.44362 1.19070 0.92383 0.92534 0.87272 1.21307 1.00309 1.03844 0.97451 1.20971 0.94735 0.97305 0.96875 1.21071 0.94071 1.02456 1.00498 1.20984 0.99930 0.95710 0.93308 1.20499 0.91547 1.04442 1.00815 0.94385 0.92141 0.95667 0.92544 0.83056 0.93128 0.88899 0.92454 0.91213 0.90605 0.90522 0.89478 0.90016 0.90727 0.91934 0.91559 0.85408 0.85821 0.85966 0.85386 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.89 37.16 0.33 -2.73 16 2 C 0.18 4.34 2.19 -68.86 -0.15 4.19 16 3 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 4 C -0.52 -14.72 9.17 -34.44 -0.32 -15.04 16 5 H 0.08 2.48 7.86 -52.49 -0.41 2.07 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 8 Si 0.89 21.85 24.37 -169.99 -4.14 17.71 16 9 H -0.28 -6.66 6.88 56.52 0.39 -6.27 16 10 H -0.27 -6.24 6.52 56.52 0.37 -5.87 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 N -0.66 -14.18 5.93 -109.21 -0.65 -14.83 16 13 C 0.04 0.70 4.52 -4.98 -0.02 0.68 16 14 C 0.51 8.15 7.71 -10.99 -0.08 8.06 16 15 O -0.52 -10.19 15.78 5.56 0.09 -10.10 16 16 N -0.63 -7.15 2.87 -181.57 -0.52 -7.67 16 17 C 0.08 0.62 10.24 59.85 0.61 1.23 16 18 C 0.12 1.16 5.41 -4.04 -0.02 1.14 16 19 C -0.14 -1.30 5.91 -26.73 -0.16 -1.46 16 20 C 0.06 0.56 4.74 37.16 0.18 0.73 16 21 O -0.31 -3.45 10.14 -19.43 -0.20 -3.65 16 22 C 0.13 1.36 6.69 -39.21 -0.26 1.10 16 23 C -0.21 -1.83 9.04 -39.43 -0.36 -2.19 16 24 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 25 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 26 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 27 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 28 H 0.04 0.86 3.28 -51.93 -0.17 0.69 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.02 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.35 7.89 7.92 -39.29 -0.31 7.58 16 33 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 34 H 0.09 1.39 7.40 -51.93 -0.38 1.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 37 H 0.08 0.61 6.44 -51.93 -0.33 0.27 16 38 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 43 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 44 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 48 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -34.22 386.44 -8.41 -42.63 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.65 Total: 4.54 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.94 Total: -7.77 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.40 Total: -49.19 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.11 Total: -13.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.22 -8.41 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.486 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds