Wall clock time and date at job start Tue Mar 31 2020 12:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00167 * 2 1 4 4 C 1.38758 * 120.04920 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.93878 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05528 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11203 * 359.75120 * 6 5 4 8 8 C 1.38168 * 120.05486 * 0.49970 * 7 6 5 9 9 C 1.50705 * 120.02739 * 179.76936 * 8 7 6 10 10 H 1.08994 * 109.46946 * 213.14040 * 9 8 7 11 11 C 1.53001 * 109.46806 * 93.13539 * 9 8 7 12 12 N 1.46502 * 109.47013 * 333.14097 * 9 8 7 13 13 C 1.34782 * 119.99559 * 206.81086 * 12 9 8 14 14 O 1.21281 * 120.00165 * 359.72911 * 13 12 9 15 15 C 1.50702 * 119.99790 * 179.97438 * 13 12 9 16 16 H 1.08995 * 109.47180 * 300.00444 * 15 13 12 17 17 C 1.53010 * 109.46772 * 60.00220 * 15 13 12 18 18 N 1.46895 * 109.46891 * 180.02562 * 15 13 12 19 19 C 1.46907 * 110.99700 * 152.73723 * 18 15 13 20 20 H 1.09000 * 109.47228 * 34.23327 * 19 18 15 21 21 C 1.52995 * 109.46861 * 154.23095 * 19 18 15 22 22 C 1.50697 * 109.46643 * 274.22832 * 19 18 15 23 23 H 1.07998 * 120.00337 * 0.02562 * 22 19 18 24 24 C 1.37879 * 119.99743 * 180.02562 * 22 19 18 25 25 N 1.31519 * 119.99787 * 0.02562 * 24 22 19 26 26 Si 1.86796 * 120.00148 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47176 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47319 * 119.99832 * 26 24 22 29 29 H 1.48503 * 109.47010 * 239.99886 * 26 24 22 30 30 H 1.09004 * 109.47039 * 299.99768 * 1 2 3 31 31 H 1.08992 * 109.47576 * 59.99759 * 1 2 3 32 32 H 1.09001 * 109.47265 * 180.02562 * 1 2 3 33 33 H 1.07995 * 120.03118 * 359.96039 * 4 3 2 34 34 H 1.07998 * 119.97138 * 179.97438 * 5 4 3 35 35 H 1.07995 * 119.94065 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.97409 * 180.25100 * 7 6 5 37 37 H 1.09008 * 109.46970 * 60.00247 * 11 9 8 38 38 H 1.08999 * 109.47283 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47776 * 300.00545 * 11 9 8 40 40 H 0.96999 * 120.00412 * 26.81284 * 12 9 8 41 41 H 1.08994 * 109.46651 * 175.22674 * 17 15 13 42 42 H 1.09000 * 109.46940 * 295.22965 * 17 15 13 43 43 H 1.08999 * 109.46661 * 55.22913 * 17 15 13 44 44 H 1.00906 * 110.99647 * 276.68325 * 18 15 13 45 45 H 1.09004 * 109.47286 * 185.94559 * 21 19 18 46 46 H 1.09000 * 109.47702 * 305.94305 * 21 19 18 47 47 H 1.09007 * 109.47308 * 65.94288 * 21 19 18 48 48 H 0.96997 * 119.99604 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5172 0.0047 8 6 3.4310 1.2849 -0.0011 9 6 4.2537 0.0221 -0.0019 10 1 3.7330 -0.7503 -0.5677 11 6 4.4609 -0.4523 1.4379 12 7 5.5549 0.2874 -0.6206 13 6 6.2318 -0.7116 -1.2209 14 8 5.7659 -1.8311 -1.2446 15 6 7.5700 -0.4386 -1.8579 16 1 7.4533 0.3090 -2.6423 17 6 8.5427 0.0821 -0.7977 18 7 8.0976 -1.6800 -2.4397 19 6 8.9944 -1.3931 -3.5674 20 1 9.5379 -0.4685 -3.3734 21 6 9.9887 -2.5439 -3.7337 22 6 8.1832 -1.2439 -4.8287 23 1 7.1091 -1.3510 -4.7958 24 6 8.8125 -0.9707 -6.0247 25 7 10.1207 -0.8409 -6.0648 26 14 7.8071 -0.7850 -7.5880 27 1 6.3678 -0.9764 -7.2766 28 1 8.0156 0.5726 -8.1524 29 1 8.2387 -1.8043 -8.5781 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2127 2.3203 0.0003 34 1 1.3339 4.5114 0.0011 35 1 3.7921 4.6381 0.0005 36 1 5.1344 2.5752 0.0083 37 1 3.4927 -0.6497 1.8983 38 1 5.0555 -1.3659 1.4374 39 1 4.9815 0.3202 2.0038 40 1 5.9293 1.1820 -0.5981 41 1 9.5324 0.1990 -1.2389 42 1 8.1939 1.0458 -0.4267 43 1 8.5944 -0.6279 0.0278 44 1 8.5638 -2.2377 -1.7399 45 1 10.7194 -2.2850 -4.5000 46 1 10.5012 -2.7209 -2.7881 47 1 9.4540 -3.4460 -4.0315 48 1 10.5633 -0.6483 -6.9062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860372.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:21 Heat of formation + Delta-G solvation = -67.145832 kcal Electronic energy + Delta-G solvation = -27346.569292 eV Core-core repulsion = 23594.000521 eV Total energy + Delta-G solvation = -3752.568771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54711 -40.61545 -38.53332 -37.78778 -36.41317 -34.90870 -33.06024 -31.82156 -31.17963 -30.11961 -28.51048 -28.12399 -27.25341 -25.58679 -24.38392 -23.16187 -22.26459 -21.77594 -20.99869 -19.14464 -18.32379 -17.93164 -17.57461 -16.98839 -16.68994 -16.58793 -16.34579 -16.03755 -15.54774 -15.42259 -15.22069 -15.04326 -14.62538 -14.44365 -14.37531 -14.14309 -13.74338 -13.36082 -13.29276 -13.22694 -13.16849 -12.86920 -12.79332 -12.68436 -12.61188 -12.31818 -12.28541 -12.12197 -12.07499 -12.00882 -11.91477 -11.63368 -11.16411 -10.62690 -10.49767 -10.14344 -9.82647 -9.11959 -8.94514 -8.09143 -6.19355 0.31753 0.47305 1.37956 1.40896 1.53150 1.78743 2.15923 2.38609 2.43742 2.79134 3.17397 3.56994 3.65333 3.86813 3.89717 4.07308 4.18170 4.21633 4.32426 4.33176 4.35199 4.38761 4.44909 4.51590 4.68094 4.72559 4.74733 4.76213 4.78977 4.89441 4.94985 4.97822 5.01917 5.09357 5.19025 5.22253 5.30697 5.41476 5.46625 5.55295 5.66163 5.71988 5.83890 5.84684 6.30712 6.39158 6.44372 6.67510 6.93482 6.95566 7.40629 7.49913 8.95392 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.003139 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.144858 B = 8918.964643 C = 9532.842191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.085 4.085 8 C -0.140 4.140 9 C 0.195 3.805 10 H 0.062 0.938 11 C -0.142 4.142 12 N -0.717 5.717 13 C 0.523 3.477 14 O -0.565 6.565 15 C 0.074 3.926 16 H 0.090 0.910 17 C -0.162 4.162 18 N -0.678 5.678 19 C 0.221 3.779 20 H -0.011 1.011 21 C -0.130 4.130 22 C -0.513 4.513 23 H 0.039 0.961 24 C 0.016 3.984 25 N -0.917 5.917 26 Si 0.952 3.048 27 H -0.280 1.280 28 H -0.274 1.274 29 H -0.279 1.279 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.409 0.591 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.331 0.669 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.025 0.975 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 12.025 17.621 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.172 4.172 7 C -0.103 4.103 8 C -0.141 4.141 9 C 0.091 3.909 10 H 0.080 0.920 11 C -0.200 4.200 12 N -0.372 5.372 13 C 0.310 3.690 14 O -0.442 6.442 15 C -0.040 4.040 16 H 0.108 0.892 17 C -0.221 4.221 18 N -0.309 5.309 19 C 0.114 3.886 20 H 0.007 0.993 21 C -0.188 4.188 22 C -0.552 4.552 23 H 0.057 0.943 24 C -0.183 4.183 25 N -0.557 5.557 26 Si 0.778 3.222 27 H -0.205 1.205 28 H -0.199 1.199 29 H -0.205 1.205 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.247 0.753 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.783 10.934 17.060 26.311 hybrid contribution 0.327 0.490 -0.761 0.962 sum -16.455 11.424 16.300 25.826 Atomic orbital electron populations 1.23318 0.76540 1.05287 1.02356 1.86098 1.23421 1.27158 1.88555 1.19006 0.91618 0.85224 0.97049 1.21501 1.01075 0.91874 1.08306 1.21354 0.95012 0.97646 0.96047 1.21380 0.94250 0.98891 1.02699 1.20987 1.00796 0.90822 0.97733 1.19320 0.91068 0.95361 1.08336 1.19373 0.82620 0.94324 0.94611 0.91954 1.21995 1.02330 1.01188 0.94484 1.46093 1.20498 1.12605 1.58041 1.21023 0.86901 0.84411 0.76699 1.90626 1.69883 1.24492 1.59176 1.21393 0.91886 0.93730 0.97003 0.89193 1.22336 0.99131 1.02707 0.97936 1.60121 1.42226 1.17230 1.11306 1.18965 0.88978 0.92787 0.87897 0.99327 1.21761 0.99410 0.98033 0.99644 1.21419 0.93203 1.47031 0.93504 0.94293 1.25587 0.95942 0.95275 1.01492 1.69993 1.08657 1.50127 1.26915 0.85605 0.78715 0.77923 0.79952 1.20486 1.19946 1.20474 0.90960 0.91916 0.87127 0.83347 0.82979 0.83225 0.84070 0.91228 0.93607 0.90724 0.75252 0.92122 0.89014 0.91635 0.85136 0.91707 0.94517 0.95597 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.88 9.60 -92.48 -0.89 -8.77 16 3 C 0.12 2.62 6.66 22.51 0.15 2.77 16 4 C -0.21 -3.50 9.04 22.37 0.20 -3.30 16 5 C -0.08 -1.17 10.04 22.26 0.22 -0.95 16 6 C -0.15 -2.30 10.04 22.28 0.22 -2.08 16 7 C -0.09 -1.57 9.23 22.25 0.21 -1.36 16 8 C -0.14 -3.27 5.06 -19.77 -0.10 -3.37 16 9 C 0.20 5.45 2.55 44.25 0.11 5.56 16 10 H 0.06 2.23 7.02 -2.39 -0.02 2.21 16 11 C -0.14 -3.44 9.48 71.98 0.68 -2.75 16 12 N -0.72 -20.16 4.89 -446.08 -2.18 -22.34 16 13 C 0.52 19.60 7.21 87.66 0.63 20.23 16 14 O -0.56 -26.33 16.06 -3.03 -0.05 -26.38 16 15 C 0.07 2.79 2.79 44.17 0.12 2.91 16 16 H 0.09 3.68 7.64 -2.39 -0.02 3.66 16 17 C -0.16 -4.50 9.01 71.99 0.65 -3.85 16 18 N -0.68 -30.87 5.54 -477.15 -2.64 -33.51 16 19 C 0.22 11.39 2.41 44.17 0.11 11.50 16 20 H -0.01 -0.58 7.27 -2.39 -0.02 -0.60 16 21 C -0.13 -6.45 8.92 71.98 0.64 -5.81 16 22 C -0.51 -29.72 8.55 25.60 0.22 -29.50 16 23 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 24 C 0.02 0.88 5.30 84.65 0.45 1.33 16 25 N -0.92 -52.81 11.38 21.45 0.24 -52.57 16 26 Si 0.95 45.49 29.54 68.60 2.03 47.52 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 30 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 34 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.14 2.04 6.15 -2.91 -0.02 2.02 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 8.80 5.80 -92.71 -0.54 8.26 16 41 H 0.06 1.81 7.57 -2.39 -0.02 1.79 16 42 H 0.09 1.86 7.70 -2.39 -0.02 1.84 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.33 13.90 7.97 -89.69 -0.71 13.18 16 45 H 0.06 3.48 6.25 -2.39 -0.01 3.46 16 46 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 47 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -74.70 388.53 1.86 -72.84 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.28 Total: 30.50 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.63 Total: -7.29 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.58 Total: -108.42 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.94 Total: -35.15 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.70 1.86 -72.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860372.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -74.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds