Wall clock time and date at job start Tue Mar 31 2020 12:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 O 1.42890 * 109.47453 * 120.00921 * 2 1 3 5 5 C 1.35900 * 117.00439 * 83.41895 * 4 2 1 6 6 C 1.38752 * 120.05438 * 358.60465 * 5 4 2 7 7 C 1.38117 * 119.94500 * 179.97438 * 6 5 4 8 8 C 1.38293 * 120.05752 * 359.74499 * 7 6 5 9 9 C 1.38247 * 120.10650 * 0.50715 * 8 7 6 10 10 C 1.50698 * 119.96820 * 179.76467 * 9 8 7 11 11 N 1.46496 * 109.47208 * 269.72338 * 10 9 8 12 12 C 1.34783 * 119.99675 * 179.72481 * 11 10 9 13 13 O 1.21276 * 120.00414 * 0.28061 * 12 11 10 14 14 C 1.50701 * 119.99731 * 180.27869 * 12 11 10 15 15 N 1.46894 * 109.47008 * 179.97438 * 14 12 11 16 16 C 1.46902 * 111.00168 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.46877 * 35.00485 * 16 15 14 18 18 C 1.52994 * 109.47620 * 275.00331 * 16 15 14 19 19 C 1.50707 * 109.47143 * 155.00094 * 16 15 14 20 20 H 1.07998 * 119.99775 * 35.01900 * 19 16 15 21 21 C 1.37881 * 119.99861 * 215.01957 * 19 16 15 22 22 N 1.31512 * 119.99341 * 184.67558 * 21 19 16 23 23 Si 1.86797 * 120.00137 * 4.66708 * 21 19 16 24 24 H 1.48502 * 109.46869 * 85.83781 * 23 21 19 25 25 H 1.48502 * 109.47081 * 205.83334 * 23 21 19 26 26 H 1.48497 * 109.47541 * 325.83913 * 23 21 19 27 27 C 1.38168 * 120.05694 * 359.49575 * 9 8 7 28 28 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46829 * 299.99314 * 1 2 3 30 30 H 1.09009 * 109.47395 * 59.99082 * 1 2 3 31 31 H 1.09002 * 109.46829 * 240.00686 * 2 1 3 32 32 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47577 * 300.00758 * 3 2 1 34 34 H 1.09002 * 109.46651 * 60.00577 * 3 2 1 35 35 H 1.08003 * 120.02716 * 359.95202 * 6 5 4 36 36 H 1.08004 * 119.97694 * 180.02562 * 7 6 5 37 37 H 1.07995 * 119.94653 * 180.27660 * 8 7 6 38 38 H 1.09006 * 109.47023 * 149.72657 * 10 9 8 39 39 H 1.09001 * 109.47110 * 29.73076 * 10 9 8 40 40 H 0.96994 * 120.00650 * 0.02562 * 11 10 9 41 41 H 1.09001 * 109.47337 * 299.99799 * 14 12 11 42 42 H 1.09000 * 109.47154 * 60.00349 * 14 12 11 43 43 H 1.00898 * 111.00560 * 303.95886 * 15 14 12 44 44 H 1.08997 * 109.47165 * 55.20192 * 18 16 15 45 45 H 1.09001 * 109.47603 * 175.20198 * 18 16 15 46 46 H 1.09004 * 109.46996 * 295.20506 * 18 16 15 47 47 H 0.97005 * 119.99667 * 180.02562 * 22 21 19 48 48 H 1.07999 * 120.02668 * 180.22848 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0813 -2.0295 1.1088 6 6 1.6766 -2.6996 -0.0368 7 6 1.7542 -4.0774 -0.0932 8 6 2.2396 -4.7888 0.9888 9 6 2.6385 -4.1238 2.1333 10 6 3.1620 -4.9024 3.3126 11 7 2.0505 -5.2476 4.2022 12 6 2.2817 -5.9536 5.3268 13 8 3.4105 -6.2988 5.6049 14 6 1.1373 -6.3141 6.2387 15 7 1.6468 -7.0781 7.3852 16 6 0.5568 -7.4472 8.2982 17 1 -0.3456 -7.6525 7.7224 18 6 0.2915 -6.2942 9.2683 19 6 0.9475 -8.6779 9.0755 20 1 1.9757 -8.8262 9.3707 21 6 -0.0077 -9.6143 9.4097 22 7 0.3143 -10.6410 10.1657 23 14 -1.7592 -9.4244 8.7887 24 1 -1.8727 -10.0262 7.4359 25 1 -2.6910 -10.1140 9.7170 26 1 -2.1064 -7.9823 8.7196 27 6 2.5628 -2.7455 2.1948 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8898 34 1 1.6767 1.9562 0.8901 35 1 1.3010 -2.1443 -0.8835 36 1 1.4398 -4.5996 -0.9849 37 1 2.3037 -5.8658 0.9411 38 1 3.8870 -4.2959 3.8555 39 1 3.6429 -5.8152 2.9607 40 1 1.1475 -4.9718 3.9797 41 1 0.6551 -5.4034 6.5940 42 1 0.4138 -6.9189 5.6922 43 1 2.1544 -7.8946 7.0789 44 1 0.0923 -5.3832 8.7041 45 1 -0.5719 -6.5331 9.8893 46 1 1.1652 -6.1449 9.9028 47 1 -0.3576 -11.3001 10.4005 48 1 2.8781 -2.2263 3.0878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:52 Heat of formation + Delta-G solvation = -78.351103 kcal Electronic energy + Delta-G solvation = -25855.423426 eV Core-core repulsion = 22102.368757 eV Total energy + Delta-G solvation = -3753.054668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39949 -40.67182 -38.95481 -37.52561 -35.81145 -34.44838 -34.17112 -32.57447 -31.52154 -30.74951 -28.37722 -27.94978 -27.25734 -25.81530 -23.67752 -23.45713 -21.68688 -21.46453 -21.20666 -19.41659 -18.97989 -17.97405 -17.21827 -17.17338 -16.97413 -16.78615 -16.41862 -16.28659 -15.58981 -15.38850 -15.10216 -14.97357 -14.66125 -14.49717 -14.45677 -14.06371 -13.93750 -13.75140 -13.51549 -13.23518 -13.15208 -13.05438 -12.84756 -12.80100 -12.64410 -12.55701 -12.47606 -12.18960 -12.14010 -11.79128 -11.72700 -11.51785 -11.10928 -10.92770 -10.72089 -10.13321 -9.91885 -9.17823 -9.09481 -8.29799 -6.36992 0.17415 0.45232 1.34707 1.36955 1.48458 1.66694 2.13539 2.23644 2.33890 2.82546 3.04333 3.59939 3.63006 3.77854 3.88908 3.93772 3.99658 4.04035 4.12409 4.26257 4.32866 4.38463 4.44614 4.46768 4.59305 4.67581 4.69511 4.69850 4.80681 4.85771 4.89941 4.90293 4.98922 5.04478 5.09550 5.18538 5.25448 5.33567 5.39147 5.44478 5.50758 5.57672 5.71204 5.77423 5.99660 6.48212 6.49247 6.50257 6.70329 6.81065 7.28421 7.32130 8.87280 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002051 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.623906 B =13646.274135 C =13892.063758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.330 6.330 5 C 0.119 3.881 6 C -0.203 4.203 7 C -0.079 4.079 8 C -0.144 4.144 9 C -0.067 4.067 10 C 0.165 3.835 11 N -0.714 5.714 12 C 0.517 3.483 13 O -0.570 6.570 14 C 0.038 3.962 15 N -0.682 5.682 16 C 0.184 3.816 17 H 0.016 0.984 18 C -0.122 4.122 19 C -0.525 4.525 20 H 0.028 0.972 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.238 1.238 27 C -0.150 4.150 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.414 0.586 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.338 0.662 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.036 0.964 47 H 0.267 0.733 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 23.707 -29.751 38.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.244 6.244 5 C 0.074 3.926 6 C -0.222 4.222 7 C -0.097 4.097 8 C -0.163 4.163 9 C -0.067 4.067 10 C 0.042 3.958 11 N -0.368 5.368 12 C 0.304 3.696 13 O -0.448 6.448 14 C -0.094 4.094 15 N -0.315 5.315 16 C 0.076 3.924 17 H 0.034 0.966 18 C -0.181 4.181 19 C -0.564 4.564 20 H 0.047 0.953 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.771 3.229 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.161 1.161 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.156 0.844 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.135 24.023 -28.945 37.676 hybrid contribution -1.130 -1.088 -0.314 1.600 sum -3.265 22.934 -29.260 37.320 Atomic orbital electron populations 1.22379 0.94269 1.03025 1.03875 1.22723 0.95006 0.94184 0.86838 1.21889 1.01909 0.92776 1.03940 1.86130 1.81164 1.16122 1.41015 1.19074 0.95996 0.82939 0.94576 1.21574 1.06310 0.95984 0.98283 1.21259 0.96328 0.93224 0.98866 1.21220 1.01044 1.00903 0.93090 1.19492 0.99588 0.92418 0.95226 1.20112 0.88933 0.98666 0.88125 1.45882 1.11944 1.56476 1.22506 1.20910 0.90285 0.77088 0.81348 1.90688 1.25469 1.54678 1.73934 1.21975 0.94353 1.01278 0.91783 1.60357 1.26827 1.28335 1.15954 1.19508 0.89037 0.93042 0.90816 0.96619 1.21772 0.99781 0.97472 0.99050 1.21275 0.95349 1.04707 1.35056 0.95326 1.26020 1.03826 0.94303 0.94574 1.70075 1.36457 1.14094 1.37968 0.85725 0.78537 0.80103 0.78492 1.19121 1.21274 1.16138 1.20396 1.04787 0.93193 0.98499 0.92294 0.92209 0.88890 0.89787 0.92078 0.88240 0.92021 0.83335 0.83025 0.84631 0.91508 0.90755 0.74959 0.86639 0.91162 0.84427 0.92621 0.93900 0.94496 0.92405 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.18 71.98 0.66 -0.82 16 2 C 0.07 0.70 2.86 30.59 0.09 0.78 16 3 C -0.15 -1.15 9.56 71.98 0.69 -0.46 16 4 O -0.33 -5.69 9.81 -92.43 -0.91 -6.60 16 5 C 0.12 2.05 6.57 22.51 0.15 2.20 16 6 C -0.20 -2.64 8.23 22.36 0.18 -2.45 16 7 C -0.08 -0.96 10.04 22.25 0.22 -0.73 16 8 C -0.14 -2.13 9.70 22.29 0.22 -1.91 16 9 C -0.07 -1.18 5.25 -19.88 -0.10 -1.28 16 10 C 0.16 3.51 5.80 85.63 0.50 4.00 16 11 N -0.71 -16.03 5.55 -466.79 -2.59 -18.62 16 12 C 0.52 16.28 7.87 87.66 0.69 16.97 16 13 O -0.57 -23.42 16.20 -3.02 -0.05 -23.47 16 14 C 0.04 1.21 5.96 85.56 0.51 1.72 16 15 N -0.68 -29.37 5.93 -499.46 -2.96 -32.33 16 16 C 0.18 8.58 2.26 44.17 0.10 8.68 16 17 H 0.02 0.71 4.94 -2.39 -0.01 0.70 16 18 C -0.12 -5.16 9.42 71.98 0.68 -4.48 16 19 C -0.53 -30.45 8.84 25.60 0.23 -30.22 16 20 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 21 C 0.01 0.62 5.47 84.66 0.46 1.08 16 22 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 23 Si 0.95 42.92 27.01 68.60 1.85 44.77 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.24 -9.71 6.78 99.48 0.67 -9.03 16 27 C -0.15 -2.80 9.64 22.37 0.22 -2.58 16 28 H 0.06 0.55 7.02 -2.39 -0.02 0.53 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.08 0.65 6.20 -2.39 -0.01 0.64 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.15 1.26 5.52 -2.91 -0.02 1.25 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.07 1.57 8.09 -2.38 -0.02 1.55 16 39 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 40 H 0.41 7.01 8.46 -92.71 -0.78 6.23 16 41 H 0.12 3.13 7.37 -2.39 -0.02 3.11 16 42 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.34 15.92 8.05 -89.70 -0.72 15.20 16 44 H 0.05 1.93 7.36 -2.39 -0.02 1.91 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 48 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -75.20 392.78 0.56 -74.64 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.57 Total: 30.20 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.48 Total: -9.50 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -5.25 Total: -110.05 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.96 Total: -30.06 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.85 Total: 44.77 kcal Total: -75.20 0.56 -74.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.710 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds