Wall clock time and date at job start Tue Mar 31 2020 12:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00063 * 2 1 4 4 C 1.38753 * 120.05331 * 0.02715 * 3 2 1 5 5 C 1.38117 * 119.94626 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05615 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.10835 * 359.74534 * 6 5 4 8 8 C 1.38167 * 120.05409 * 0.50548 * 7 6 5 9 9 C 1.50693 * 120.02810 * 179.76619 * 8 7 6 10 10 H 1.09002 * 109.47288 * 146.17293 * 9 8 7 11 11 C 1.53002 * 109.47424 * 266.17703 * 9 8 7 12 12 N 1.46500 * 109.46946 * 26.17532 * 9 8 7 13 13 C 1.46498 * 119.99985 * 246.35609 * 12 9 8 14 14 C 1.34778 * 120.00284 * 66.35717 * 12 9 8 15 15 O 1.21282 * 119.99719 * 359.97438 * 14 12 9 16 16 C 1.50696 * 120.00145 * 180.02562 * 14 12 9 17 17 N 1.46900 * 109.46960 * 180.02562 * 16 14 12 18 18 C 1.46899 * 111.00015 * 180.02562 * 17 16 14 19 19 H 1.08999 * 109.46990 * 324.99199 * 18 17 16 20 20 C 1.52997 * 109.47478 * 84.99403 * 18 17 16 21 21 C 1.50701 * 109.47464 * 204.99872 * 18 17 16 22 22 H 1.08005 * 119.99362 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00477 * 180.02562 * 21 18 17 24 24 N 1.31509 * 119.99907 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 119.99925 * 179.97438 * 23 21 18 26 26 H 1.48504 * 109.47090 * 269.99446 * 25 23 21 27 27 H 1.48504 * 109.47418 * 29.99711 * 25 23 21 28 28 H 1.48504 * 109.47077 * 149.99547 * 25 23 21 29 29 H 1.09005 * 109.47391 * 59.99783 * 1 2 3 30 30 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 299.99928 * 1 2 3 32 32 H 1.08003 * 120.02875 * 359.94867 * 4 3 2 33 33 H 1.07999 * 119.97937 * 179.97438 * 5 4 3 34 34 H 1.07993 * 119.94881 * 180.02562 * 6 5 4 35 35 H 1.07997 * 119.97184 * 180.25391 * 7 6 5 36 36 H 1.09004 * 109.47113 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.46902 * 299.99803 * 11 9 8 38 38 H 1.08990 * 109.47460 * 59.99846 * 11 9 8 39 39 H 1.09006 * 109.47484 * 266.17172 * 13 12 9 40 40 H 1.09005 * 109.47268 * 26.17417 * 13 12 9 41 41 H 1.09004 * 109.47208 * 146.17112 * 13 12 9 42 42 H 1.08997 * 109.47694 * 59.99553 * 16 14 12 43 43 H 1.09001 * 109.47354 * 299.99648 * 16 14 12 44 44 H 1.00896 * 111.00048 * 303.94713 * 17 16 14 45 45 H 1.09003 * 109.47389 * 179.97438 * 20 18 17 46 46 H 1.08997 * 109.47233 * 300.00135 * 20 18 17 47 47 H 1.08996 * 109.47340 * 60.00425 * 20 18 17 48 48 H 0.96997 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5172 0.0069 8 6 3.4311 1.2849 0.0011 9 6 4.2537 0.0223 0.0016 10 1 3.7343 -0.7496 0.5695 11 6 4.4578 -0.4541 -1.4380 12 7 5.5562 0.2883 0.6172 13 6 6.7761 0.2189 -0.1909 14 6 5.6321 0.5968 1.9270 15 8 4.6221 0.6547 2.5959 16 6 6.9719 0.8710 2.5600 17 7 6.7865 1.1802 3.9841 18 6 8.0744 1.4542 4.6354 19 1 8.8453 0.8204 4.1970 20 6 8.4462 2.9243 4.4320 21 6 7.9637 1.1633 6.1099 22 1 7.0297 0.8106 6.5220 23 6 9.0542 1.3485 6.9330 24 7 10.1912 1.7785 6.4312 25 14 8.9166 0.9886 8.7608 26 1 8.4819 2.2156 9.4756 27 1 7.9203 -0.0907 8.9793 28 1 10.2383 0.5549 9.2808 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2127 2.3203 0.0002 33 1 1.3339 4.5114 0.0011 34 1 3.7921 4.6381 0.0024 35 1 5.1343 2.5753 0.0114 36 1 5.0532 -1.3671 -1.4377 37 1 3.4887 -0.6520 -1.8960 38 1 4.9772 0.3177 -2.0059 39 1 7.2113 -0.7771 -0.1073 40 1 6.5333 0.4229 -1.2338 41 1 7.4917 0.9592 0.1670 42 1 7.4425 1.7188 2.0621 43 1 7.6081 -0.0083 2.4594 44 1 6.1484 1.9521 4.1064 45 1 9.4016 3.1277 4.9157 46 1 8.5264 3.1346 3.3656 47 1 7.6754 3.5580 4.8704 48 1 10.9585 1.9084 7.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:08 Heat of formation + Delta-G solvation = -51.620260 kcal Electronic energy + Delta-G solvation = -27682.068560 eV Core-core repulsion = 23930.173028 eV Total energy + Delta-G solvation = -3751.895532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66995 -40.55505 -38.43543 -37.63812 -36.97094 -34.52782 -33.45977 -31.18266 -30.94300 -30.18910 -28.25994 -27.82930 -27.29021 -26.70269 -24.22180 -23.06021 -22.37025 -21.94574 -20.07825 -19.01887 -18.55674 -17.94089 -17.51379 -17.28838 -16.68961 -16.55997 -16.49083 -16.39389 -15.48672 -15.43452 -15.10836 -15.00352 -14.47367 -14.40196 -14.24738 -13.82812 -13.74821 -13.54709 -13.36588 -13.22719 -13.16913 -12.89874 -12.85986 -12.73147 -12.69435 -12.43564 -12.37498 -12.19885 -12.15615 -11.99949 -11.94987 -11.70979 -11.15577 -10.68122 -10.47985 -9.83756 -9.61012 -9.08448 -8.97614 -8.10390 -6.20403 0.36464 0.48953 1.42618 1.42988 1.54791 1.69286 1.97050 2.39202 2.45065 2.80576 3.17878 3.59050 3.70103 3.79325 3.90332 4.08446 4.16047 4.22071 4.28180 4.31426 4.38484 4.40017 4.44025 4.44534 4.52372 4.68646 4.70899 4.73497 4.74767 4.77708 4.89062 4.94796 4.99185 5.07236 5.07896 5.21742 5.31134 5.37303 5.43832 5.56968 5.69249 5.70638 5.81039 5.86179 6.23855 6.37802 6.46063 6.62521 6.74772 6.91980 7.28719 7.49121 8.95154 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002929 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.382200 B = 9558.120075 C = 9825.714356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.166 4.166 7 C -0.082 4.082 8 C -0.131 4.131 9 C 0.195 3.805 10 H 0.058 0.942 11 C -0.140 4.140 12 N -0.611 5.611 13 C 0.061 3.939 14 C 0.513 3.487 15 O -0.561 6.561 16 C 0.050 3.950 17 N -0.682 5.682 18 C 0.220 3.780 19 H 0.014 0.986 20 C -0.156 4.156 21 C -0.520 4.520 22 H 0.046 0.954 23 C 0.014 3.986 24 N -0.918 5.918 25 Si 0.958 3.042 26 H -0.276 1.276 27 H -0.276 1.276 28 H -0.279 1.279 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.331 0.669 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.025 0.975 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -0.046 -22.578 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.107 4.107 6 C -0.184 4.184 7 C -0.100 4.100 8 C -0.132 4.132 9 C 0.092 3.908 10 H 0.076 0.924 11 C -0.197 4.197 12 N -0.345 5.345 13 C -0.081 4.081 14 C 0.302 3.698 15 O -0.438 6.438 16 C -0.082 4.082 17 N -0.313 5.313 18 C 0.111 3.889 19 H 0.032 0.968 20 C -0.216 4.216 21 C -0.559 4.559 22 H 0.064 0.936 23 C -0.185 4.185 24 N -0.558 5.558 25 Si 0.784 3.216 26 H -0.201 1.201 27 H -0.201 1.201 28 H -0.204 1.204 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.966 -0.868 -21.993 26.617 hybrid contribution 0.122 0.874 0.993 1.329 sum -14.844 0.006 -21.000 25.717 Atomic orbital electron populations 1.23306 0.76690 1.05401 1.02044 1.86039 1.23244 1.26763 1.88638 1.18944 0.91693 0.85107 0.96996 1.21477 1.00991 0.92041 1.08647 1.21252 0.94661 0.97832 0.96919 1.21316 0.94609 0.98684 1.03832 1.20884 1.00070 0.91451 0.97636 1.19613 0.91166 0.96300 1.06149 1.19617 0.82243 0.93102 0.95835 0.92363 1.22017 1.03550 1.02246 0.91881 1.48068 1.08304 1.69853 1.08309 1.22223 0.85190 1.03278 0.97384 1.20888 0.91105 0.76007 0.81835 1.90666 1.38546 1.51819 1.62806 1.21837 0.93807 1.02255 0.90321 1.60397 1.13928 1.46872 1.10126 1.18972 0.85234 0.91649 0.93004 0.96778 1.22247 1.02465 0.99156 0.97716 1.21433 0.97172 1.43479 0.93781 0.93565 1.25630 0.94945 0.95130 1.02776 1.69972 1.02030 1.47274 1.36565 0.85560 0.77322 0.78426 0.80309 1.20128 1.20055 1.20425 0.91023 0.86524 0.92684 0.83382 0.83361 0.84495 0.85909 0.90186 0.90744 0.90196 0.91135 0.87749 0.90504 0.91550 0.88386 0.85153 0.91485 0.94894 0.95542 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.02 9.61 -92.45 -0.89 -8.91 16 3 C 0.12 3.07 6.66 22.51 0.15 3.22 16 4 C -0.21 -4.64 9.04 22.36 0.20 -4.43 16 5 C -0.09 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.17 -3.83 10.04 22.29 0.22 -3.60 16 7 C -0.08 -2.13 8.86 22.26 0.20 -1.94 16 8 C -0.13 -3.55 4.20 -19.77 -0.08 -3.63 16 9 C 0.20 4.99 2.53 44.24 0.11 5.10 16 10 H 0.06 1.84 7.62 -2.39 -0.02 1.82 16 11 C -0.14 -2.31 8.03 71.98 0.58 -1.73 16 12 N -0.61 -15.95 1.97 -826.79 -1.63 -17.58 16 13 C 0.06 1.03 9.36 127.77 1.20 2.22 16 14 C 0.51 18.22 6.85 87.66 0.60 18.82 16 15 O -0.56 -25.04 15.60 -3.04 -0.05 -25.09 16 16 C 0.05 1.82 4.57 85.56 0.39 2.21 16 17 N -0.68 -31.73 5.86 -499.48 -2.93 -34.66 16 18 C 0.22 11.38 2.57 44.17 0.11 11.49 16 19 H 0.01 0.79 7.80 -2.39 -0.02 0.77 16 20 C -0.16 -7.55 8.94 71.98 0.64 -6.90 16 21 C -0.52 -30.25 8.84 25.60 0.23 -30.02 16 22 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 23 C 0.01 0.77 5.30 84.66 0.45 1.22 16 24 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 25 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H 0.07 0.77 7.66 -2.38 -0.02 0.75 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.80 7.66 -2.39 -0.02 0.78 16 32 H 0.15 2.37 6.30 -2.91 -0.02 2.36 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.12 3.04 7.17 -2.91 -0.02 3.02 16 36 H 0.08 1.10 7.92 -2.38 -0.02 1.09 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.07 6.64 -2.39 -0.02 1.05 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.10 1.20 5.67 -2.38 -0.01 1.19 16 41 H 0.08 1.26 6.60 -2.39 -0.02 1.24 16 42 H 0.07 2.13 6.70 -2.39 -0.02 2.11 16 43 H 0.10 3.42 8.02 -2.39 -0.02 3.40 16 44 H 0.33 15.66 8.17 -89.70 -0.73 14.93 16 45 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 46 H 0.03 1.35 7.45 -2.39 -0.02 1.33 16 47 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 48 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.35 383.11 3.34 -71.01 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.23 Total: 28.79 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 6.34 Total: -8.19 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.32 Total: -104.97 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.94 Total: -33.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.35 3.34 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds