Wall clock time and date at job start Tue Mar 31 2020 12:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 C 1.50706 * 109.46662 * 119.99442 * 2 1 3 5 5 H 1.07997 * 119.99964 * 120.00261 * 4 2 1 6 6 C 1.37878 * 119.99888 * 299.99880 * 4 2 1 7 7 N 1.31514 * 120.00105 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99882 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47138 * 59.99665 * 8 6 4 10 10 H 1.48493 * 109.47422 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47034 * 300.00429 * 8 6 4 12 12 N 1.46494 * 109.47451 * 239.99608 * 2 1 3 13 13 C 1.34772 * 120.00054 * 85.00145 * 12 2 1 14 14 O 1.21582 * 120.00245 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99635 * 180.02562 * 13 12 2 16 16 C 1.39956 * 119.99628 * 185.31371 * 15 13 12 17 17 C 1.38863 * 120.06727 * 33.26287 * 16 15 13 18 18 C 1.38115 * 119.92898 * 180.02562 * 17 16 15 19 19 C 1.38287 * 120.06806 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.93020 * 179.97438 * 19 18 17 21 21 O 1.42907 * 109.46955 * 90.00426 * 20 19 18 22 22 C 1.42891 * 113.99967 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.47407 * 59.99635 * 22 21 20 24 24 C 1.53004 * 109.47052 * 179.97438 * 22 21 20 25 25 C 1.53003 * 109.47343 * 299.99940 * 22 21 20 26 26 C 1.38288 * 120.13808 * 0.23503 * 19 18 17 27 27 C 1.38106 * 120.06908 * 359.48404 * 26 19 18 28 28 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47691 * 300.01037 * 1 2 3 30 30 H 1.09007 * 109.47004 * 60.00368 * 1 2 3 31 31 H 0.97004 * 119.99678 * 179.97438 * 7 6 4 32 32 H 0.97008 * 119.99620 * 265.00128 * 12 2 1 33 33 H 0.96994 * 120.00215 * 5.31461 * 15 13 12 34 34 H 1.07999 * 120.03750 * 0.04337 * 17 16 15 35 35 H 1.07997 * 119.97088 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47384 * 330.00699 * 20 19 18 37 37 H 1.08998 * 109.47229 * 209.99890 * 20 19 18 38 38 H 1.09004 * 109.46604 * 59.99842 * 23 22 21 39 39 H 1.08997 * 109.47089 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.46884 * 300.00183 * 23 22 21 41 41 H 1.08991 * 109.47207 * 60.00173 * 24 22 21 42 42 H 1.09002 * 109.46982 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.47116 * 299.99761 * 24 22 21 44 44 H 1.08999 * 109.46793 * 59.99943 * 25 22 21 45 45 H 1.08993 * 109.47341 * 180.02562 * 25 22 21 46 46 H 1.09005 * 109.46940 * 300.00156 * 25 22 21 47 47 H 1.08002 * 119.95879 * 179.72480 * 26 19 18 48 48 H 1.08006 * 120.03744 * 180.25612 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3222 -1.1191 4.0081 9 1 3.8072 -1.1187 4.0080 10 1 1.8266 -0.4195 5.2205 11 1 1.8277 -2.5195 4.0084 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0184 -2.3570 14 8 1.8576 1.1612 -2.4119 15 7 2.5960 -0.6540 -3.4575 16 6 2.8356 0.0667 -4.6330 17 6 3.2891 1.3775 -4.5653 18 6 3.5242 2.0863 -5.7271 19 6 3.3078 1.4922 -6.9570 20 6 3.5647 2.2686 -8.2227 21 8 4.9193 2.0739 -8.6343 22 6 5.2689 2.7715 -9.8314 23 6 5.0722 4.2743 -9.6220 24 6 6.7335 2.4923 -10.1750 25 6 4.3756 2.2952 -10.9787 26 6 2.8510 0.1888 -7.0277 27 6 2.6197 -0.5272 -5.8696 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7080 1.1612 3.4843 32 1 2.2491 -1.6319 -1.1524 33 1 2.7530 -1.6109 -3.4348 34 1 3.4582 1.8421 -3.6051 35 1 3.8773 3.1056 -5.6752 36 1 3.3891 3.3289 -8.0406 37 1 2.8930 1.9184 -9.0065 38 1 5.7086 4.6136 -8.8047 39 1 5.3393 4.8064 -10.5350 40 1 4.0290 4.4735 -9.3770 41 1 6.8740 1.4218 -10.3241 42 1 7.0001 3.0240 -11.0884 43 1 7.3696 2.8319 -9.3577 44 1 3.3324 2.4945 -10.7336 45 1 4.6426 2.8269 -11.8918 46 1 4.5157 1.2246 -11.1279 47 1 2.6788 -0.2709 -7.9897 48 1 2.2669 -1.5464 -5.9255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614185040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:43 Heat of formation + Delta-G solvation = -78.720466 kcal Electronic energy + Delta-G solvation = -26245.611107 eV Core-core repulsion = 22492.540422 eV Total energy + Delta-G solvation = -3753.070685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62099 -40.31425 -39.36733 -36.96570 -35.87637 -34.52332 -34.13902 -31.88880 -31.71837 -30.31196 -28.41946 -28.25737 -27.34706 -26.37478 -24.07473 -23.47193 -22.12870 -21.51134 -20.85359 -19.83561 -18.80129 -17.87671 -17.46290 -17.19273 -16.81478 -16.74546 -16.14452 -15.89203 -15.51143 -15.31561 -15.02114 -14.61418 -14.56887 -14.37441 -14.35704 -14.18445 -13.84925 -13.60938 -13.20744 -12.99132 -12.88551 -12.85043 -12.81045 -12.73965 -12.61331 -12.35143 -12.27530 -12.22233 -12.14801 -11.99207 -11.54597 -11.23055 -11.12395 -11.05939 -10.60495 -10.41506 -9.87323 -9.83220 -8.96505 -8.17713 -6.35231 0.26120 0.48749 1.45259 1.47730 1.55323 1.76302 2.13257 2.42006 2.65372 3.12571 3.15345 3.42760 3.85532 3.87767 3.98296 4.04744 4.12728 4.18672 4.29561 4.38371 4.51879 4.62670 4.68266 4.73617 4.75201 4.75758 4.86209 4.91271 4.92273 4.98059 5.00364 5.06936 5.09924 5.19369 5.30946 5.31529 5.39069 5.40026 5.43263 5.56601 5.60946 5.64450 5.67978 5.84841 6.08052 6.10106 6.26110 6.40175 6.72007 7.21643 7.33395 7.65718 8.88586 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.001991 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.856040 B =14059.184096 C =14207.536679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.713 5.713 13 C 0.692 3.308 14 O -0.625 6.625 15 N -0.677 5.677 16 C 0.163 3.837 17 C -0.151 4.151 18 C -0.087 4.087 19 C -0.119 4.119 20 C 0.107 3.893 21 O -0.392 6.392 22 C 0.095 3.905 23 C -0.179 4.179 24 C -0.137 4.137 25 C -0.176 4.176 26 C -0.075 4.075 27 C -0.148 4.148 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.404 0.596 33 H 0.422 0.578 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.155 0.845 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -1.515 -27.665 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.505 6.505 15 N -0.326 5.326 16 C 0.067 3.933 17 C -0.172 4.172 18 C -0.106 4.106 19 C -0.120 4.120 20 C 0.031 3.969 21 O -0.313 6.313 22 C 0.057 3.943 23 C -0.236 4.236 24 C -0.194 4.194 25 C -0.233 4.233 26 C -0.094 4.094 27 C -0.168 4.168 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.260 0.740 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.173 0.827 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.159 -0.478 -27.351 28.276 hybrid contribution 0.091 -0.566 1.347 1.464 sum 7.251 -1.044 -26.003 27.015 Atomic orbital electron populations 1.21924 0.98336 0.99502 0.99535 1.18263 0.90961 0.91648 0.80665 0.98366 1.21485 1.32743 1.13675 0.90594 0.90745 1.25818 0.94889 0.95622 1.02349 1.70052 1.36835 1.23867 1.24726 0.85354 0.78562 0.78693 0.77444 1.19670 1.21200 1.18780 1.45458 1.68862 1.14083 1.08194 1.16266 0.78347 0.85015 0.81157 1.90866 1.58263 1.16475 1.84907 1.42531 1.69022 1.12167 1.08878 1.17837 0.97207 0.92435 0.85800 1.21127 1.01806 0.95228 0.99008 1.20995 0.98197 1.00023 0.91362 1.19763 1.02665 0.95723 0.93862 1.21276 0.84384 0.98362 0.92869 1.88041 1.28174 1.71685 1.43367 1.21739 0.96329 0.91567 0.84690 1.22441 1.02377 0.95639 1.03159 1.21782 0.92872 1.02599 1.02169 1.22409 0.99972 1.02342 0.98561 1.21114 0.96765 0.92785 0.98717 1.21104 1.03778 1.02254 0.89710 0.93974 0.91334 0.97106 0.92498 0.76071 0.73969 0.87885 0.85466 0.92064 0.90560 0.92708 0.89904 0.92082 0.92196 0.89229 0.92804 0.91902 0.90055 0.91910 0.82704 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 2 C 0.29 15.15 2.56 44.25 0.11 15.27 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -28.96 8.73 25.60 0.22 -28.73 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 8 Si 0.98 41.98 29.54 68.60 2.03 44.00 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.71 -30.08 5.07 -461.43 -2.34 -32.42 16 13 C 0.69 29.09 8.27 179.05 1.48 30.57 16 14 O -0.62 -32.11 13.69 -3.98 -0.05 -32.17 16 15 N -0.68 -21.09 5.35 -317.17 -1.70 -22.78 16 16 C 0.16 5.03 6.28 38.14 0.24 5.27 16 17 C -0.15 -5.24 8.65 22.39 0.19 -5.05 16 18 C -0.09 -2.51 9.69 22.25 0.22 -2.29 16 19 C -0.12 -2.82 5.51 -19.84 -0.11 -2.93 16 20 C 0.11 1.99 5.26 71.24 0.37 2.37 16 21 O -0.39 -8.06 9.97 -148.98 -1.49 -9.54 16 22 C 0.10 1.37 1.14 -10.79 -0.01 1.36 16 23 C -0.18 -2.28 8.25 71.98 0.59 -1.68 16 24 C -0.14 -1.74 8.84 71.98 0.64 -1.10 16 25 C -0.18 -1.88 8.25 71.98 0.59 -1.28 16 26 C -0.08 -1.58 9.69 22.25 0.22 -1.36 16 27 C -0.15 -3.41 9.96 22.39 0.22 -3.18 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 30 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.40 13.96 8.56 -92.70 -0.79 13.17 16 33 H 0.42 9.51 8.83 -92.71 -0.82 8.69 16 34 H 0.10 4.30 6.41 -2.91 -0.02 4.28 16 35 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.06 1.08 6.36 -2.39 -0.02 1.07 16 37 H 0.08 1.12 6.36 -2.39 -0.02 1.10 16 38 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.77 6.54 -2.39 -0.02 0.75 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.64 6.54 -2.39 -0.02 0.63 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 48 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -71.44 388.67 2.15 -69.29 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.64 Total: 34.00 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.10 Total: 2.15 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.80 Total: -107.73 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.54 Total: -41.71 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -71.44 2.15 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614185040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.431 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds