Wall clock time and date at job start Tue Mar 31 2020 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46578 * 2 1 4 4 N 1.46300 * 113.99548 * 179.97438 * 3 2 1 5 5 C 1.46894 * 111.00143 * 243.95517 * 4 3 2 6 6 C 1.52997 * 109.47258 * 66.04878 * 5 4 3 7 7 C 1.46904 * 110.99599 * 120.00098 * 4 3 2 8 8 H 1.08990 * 109.47463 * 304.99785 * 7 4 3 9 9 C 1.52999 * 109.46913 * 65.00402 * 7 4 3 10 10 C 1.50701 * 109.46895 * 184.99887 * 7 4 3 11 11 O 1.21292 * 120.00365 * 349.48660 * 10 7 4 12 12 N 1.34777 * 120.00087 * 169.48806 * 10 7 4 13 13 C 1.46497 * 119.99753 * 355.32376 * 12 10 7 14 14 C 1.50701 * 109.47331 * 96.35100 * 13 12 10 15 15 H 1.07994 * 120.00276 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99977 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00205 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00197 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46807 * 90.00107 * 18 16 14 20 20 H 1.48497 * 109.47098 * 209.99744 * 18 16 14 21 21 H 1.48497 * 109.47138 * 330.00378 * 18 16 14 22 22 C 1.39920 * 120.00415 * 175.04788 * 12 10 7 23 23 C 1.38878 * 120.06752 * 6.61833 * 22 12 10 24 24 C 1.38114 * 119.92676 * 179.76596 * 23 22 12 25 25 C 1.38282 * 120.07254 * 0.49086 * 24 23 22 26 26 C 1.38282 * 120.14005 * 359.76457 * 25 24 23 27 27 C 1.38112 * 120.07122 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47372 * 299.99496 * 1 2 3 29 29 H 1.08995 * 109.47709 * 59.99949 * 1 2 3 30 30 H 1.09009 * 109.46594 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46893 * 240.00729 * 2 1 3 32 32 H 1.09002 * 109.47326 * 120.00007 * 2 1 3 33 33 H 1.09000 * 109.47472 * 186.04649 * 5 4 3 34 34 H 1.08998 * 109.47570 * 306.05073 * 5 4 3 35 35 H 1.09004 * 109.47242 * 60.00029 * 6 5 4 36 36 H 1.09000 * 109.47755 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47418 * 300.00149 * 6 5 4 38 38 H 1.09001 * 109.46976 * 187.72995 * 9 7 4 39 39 H 1.09006 * 109.46796 * 307.72819 * 9 7 4 40 40 H 1.09003 * 109.47692 * 67.72803 * 9 7 4 41 41 H 1.09003 * 109.47175 * 216.35083 * 13 12 10 42 42 H 1.09000 * 109.47512 * 336.35027 * 13 12 10 43 43 H 0.96999 * 120.00378 * 180.02562 * 17 16 14 44 44 H 1.08002 * 120.03877 * 359.97438 * 23 22 12 45 45 H 1.07999 * 119.96573 * 180.25105 * 24 23 22 46 46 H 1.07997 * 119.93110 * 179.74670 * 25 24 23 47 47 H 1.08000 * 119.96741 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.03656 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 7 3.4647 1.4629 0.0006 5 6 3.9414 2.1049 1.2328 6 6 3.6479 1.1960 2.4280 7 6 3.9357 2.1879 -1.1871 8 1 3.5532 1.7023 -2.0847 9 6 3.4337 3.6323 -1.1352 10 6 5.4424 2.1806 -1.2152 11 8 6.0653 1.7983 -0.2472 12 7 6.0979 2.5988 -2.3161 13 6 5.3482 2.9633 -3.5207 14 6 5.1411 4.4557 -3.5512 15 1 5.5288 5.0711 -2.7530 16 6 4.4558 5.0353 -4.5978 17 7 4.2755 6.3377 -4.6247 18 14 3.7845 3.9709 -5.9784 19 1 2.4050 3.5359 -5.6420 20 1 3.7630 4.7528 -7.2406 21 1 4.6518 2.7777 -6.1498 22 6 7.4941 2.6904 -2.3066 23 6 8.2147 2.2223 -1.2155 24 6 9.5930 2.3097 -1.2113 25 6 10.2550 2.8718 -2.2875 26 6 9.5401 3.3436 -3.3731 27 6 8.1619 3.2542 -3.3858 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 5.0156 2.2757 1.1614 34 1 3.4301 3.0581 1.3672 35 1 4.1592 0.2427 2.2937 36 1 4.0020 1.6721 3.3423 37 1 2.5737 1.0251 2.4994 38 1 3.6646 4.1312 -2.0764 39 1 2.3552 3.6366 -0.9767 40 1 3.9235 4.1581 -0.3156 41 1 5.9081 2.6561 -4.4041 42 1 4.3802 2.4623 -3.5118 43 1 3.7930 6.7455 -5.3608 44 1 7.6980 1.7874 -0.3727 45 1 10.1543 1.9423 -0.3650 46 1 11.3326 2.9427 -2.2800 47 1 10.0599 3.7824 -4.2119 48 1 7.6041 3.6232 -4.2337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879795938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:38 Heat of formation + Delta-G solvation = 22.264610 kcal Electronic energy + Delta-G solvation = -28669.027686 eV Core-core repulsion = 24920.336043 eV Total energy + Delta-G solvation = -3748.691644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61654 -38.34382 -37.10111 -35.61343 -34.70451 -32.76409 -31.83250 -30.66869 -30.36453 -29.43082 -28.01431 -27.03606 -24.20939 -23.16351 -22.48340 -22.27589 -21.78158 -20.84104 -18.80669 -17.41342 -17.11363 -16.69064 -16.14417 -15.90507 -15.27919 -15.13358 -14.95737 -14.29070 -14.17033 -14.08837 -13.79844 -13.66976 -13.39195 -12.89300 -12.72322 -12.59686 -12.44172 -12.29081 -12.08257 -12.04010 -11.94500 -11.73045 -11.53747 -11.28810 -11.21881 -11.14169 -10.93582 -10.77118 -10.67184 -10.46934 -10.43018 -9.83864 -9.64810 -9.34896 -8.86491 -8.69705 -8.38773 -8.32724 -7.29599 -6.37359 -4.39494 1.78315 1.96540 2.54541 3.01731 3.07734 3.15260 3.18459 3.63966 4.12558 4.42560 4.71313 4.88150 4.97104 5.14789 5.30519 5.36414 5.39693 5.42082 5.43957 5.50301 5.59844 5.66629 5.67110 5.70374 5.89224 5.93261 5.97320 6.01535 6.05018 6.09100 6.16452 6.26390 6.31540 6.32432 6.38332 6.42920 6.47940 6.63422 6.83481 6.87831 6.95877 7.06128 7.12818 7.16851 7.24005 7.29921 7.71271 7.82807 8.19355 8.52522 8.68520 9.18219 10.73712 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.009316 B = 0.005778 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.958507 B = 4844.629745 C = 7134.238126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 O -0.260 6.260 4 N -0.341 5.341 5 C 0.015 3.985 6 C -0.138 4.138 7 C 0.059 3.941 8 H 0.111 0.889 9 C -0.195 4.195 10 C 0.533 3.467 11 O -0.526 6.526 12 N -0.522 5.522 13 C 0.195 3.805 14 C -0.542 4.542 15 H 0.085 0.915 16 C 0.083 3.917 17 N -0.879 5.879 18 Si 0.864 3.136 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.167 3.833 23 C -0.178 4.178 24 C -0.110 4.110 25 C -0.158 4.158 26 C -0.106 4.106 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.128 0.872 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.127 0.873 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.270 0.730 44 H 0.179 0.821 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 -10.122 6.250 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.264 6.264 4 N -0.109 5.109 5 C -0.113 4.113 6 C -0.196 4.196 7 C -0.052 4.052 8 H 0.128 0.872 9 C -0.253 4.253 10 C 0.323 3.677 11 O -0.406 6.406 12 N -0.241 5.241 13 C 0.075 3.925 14 C -0.580 4.580 15 H 0.103 0.897 16 C -0.122 4.122 17 N -0.514 5.514 18 Si 0.689 3.311 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.187 1.187 22 C 0.072 3.928 23 C -0.197 4.197 24 C -0.129 4.129 25 C -0.177 4.177 26 C -0.124 4.124 27 C -0.159 4.159 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.196 0.804 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.136 0.864 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.045 -10.470 6.600 12.376 hybrid contribution -0.721 0.447 -1.000 1.311 sum -0.676 -10.023 5.600 11.501 Atomic orbital electron populations 1.21764 0.94056 1.02052 1.02866 1.22263 0.93527 0.84889 1.00407 1.90685 1.13101 1.25862 1.96784 1.67696 0.91317 1.49440 1.02443 1.22987 1.03451 0.96110 0.88706 1.21654 1.01223 1.00100 0.96621 1.21819 0.91487 0.97008 0.94927 0.87157 1.22702 1.00940 0.94140 1.07493 1.20159 0.89496 0.76167 0.81840 1.90152 1.67261 1.48109 1.35099 1.45494 1.04550 1.59651 1.14355 1.20173 0.91806 0.98110 0.82423 1.21147 1.37530 0.89474 1.09852 0.89700 1.24824 0.95171 0.94831 0.97410 1.69867 1.39898 1.09558 1.32127 0.87031 0.80410 0.81122 0.82488 1.19512 1.20555 1.18696 1.18007 0.82074 0.97321 0.95372 1.22751 0.94219 1.02342 1.00407 1.21023 0.94300 0.99598 0.97936 1.21006 0.99164 1.02426 0.95120 1.20871 0.93514 0.99798 0.98255 1.21118 0.94422 1.01068 0.99309 0.92177 0.91967 0.91123 0.93386 0.93342 0.85448 0.93915 0.92291 0.92514 0.93104 0.85522 0.91939 0.93021 0.93850 0.94182 0.92023 0.80440 0.86727 0.87107 0.86423 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.07 0.86 7.14 37.16 0.27 1.13 16 3 O -0.26 -4.18 9.39 -13.92 -0.13 -4.31 16 4 N -0.34 -5.75 4.55 -107.96 -0.49 -6.24 16 5 C 0.01 0.24 4.88 -3.83 -0.02 0.22 16 6 C -0.14 -1.84 10.01 37.16 0.37 -1.47 16 7 C 0.06 1.07 2.27 -68.86 -0.16 0.91 16 8 H 0.11 1.97 6.67 -51.93 -0.35 1.62 16 9 C -0.19 -3.71 8.33 37.16 0.31 -3.40 16 10 C 0.53 10.36 6.72 -10.99 -0.07 10.29 16 11 O -0.53 -10.33 9.93 5.55 0.06 -10.28 16 12 N -0.52 -10.54 2.69 -114.74 -0.31 -10.85 16 13 C 0.20 4.08 3.10 -5.19 -0.02 4.06 16 14 C -0.54 -13.10 6.36 -34.44 -0.22 -13.32 16 15 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.88 -23.96 13.96 55.43 0.77 -23.19 16 18 Si 0.86 18.61 27.47 -169.99 -4.67 13.94 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 22 C 0.17 3.33 6.46 -83.69 -0.54 2.79 16 23 C -0.18 -3.30 9.05 -39.39 -0.36 -3.65 16 24 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 25 C -0.16 -2.41 10.04 -39.55 -0.40 -2.81 16 26 C -0.11 -1.73 10.04 -39.61 -0.40 -2.13 16 27 C -0.14 -2.64 9.01 -39.39 -0.35 -3.00 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.59 7.84 -51.93 -0.41 0.19 16 33 H 0.13 2.23 4.94 -51.93 -0.26 1.98 16 34 H 0.04 0.70 7.05 -51.93 -0.37 0.33 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16 38 H 0.13 2.75 4.32 -51.93 -0.22 2.52 16 39 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 40 H 0.05 0.99 7.05 -51.93 -0.37 0.62 16 41 H 0.04 0.90 5.96 -51.93 -0.31 0.59 16 42 H 0.04 0.80 5.32 -51.93 -0.28 0.53 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.18 3.41 4.53 -56.23 -0.25 3.15 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 47 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 48 H 0.14 2.76 6.12 -52.49 -0.32 2.44 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -26.77 372.28 -8.17 -34.94 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.31 Total: 12.08 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.70 Total: -11.71 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.03 Total: -40.28 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.08 Total: -14.59 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.67 Total: 13.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.77 -8.17 -34.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879795938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.203 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds