Wall clock time and date at job start Tue Mar 31 2020 13:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47046 * 2 1 4 4 C 1.34777 * 120.00392 * 266.69194 * 3 2 1 5 5 O 1.21586 * 120.00614 * 180.02562 * 4 3 2 6 6 N 1.34782 * 119.99325 * 0.02562 * 4 3 2 7 7 C 1.46501 * 119.99477 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46689 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47031 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47097 * 180.02562 * 9 8 7 11 11 H 1.07993 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99512 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00159 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47136 * 89.99940 * 14 12 10 16 16 H 1.48500 * 109.47061 * 210.00278 * 14 12 10 17 17 H 1.48502 * 109.46989 * 330.00024 * 14 12 10 18 18 C 1.46504 * 120.00192 * 86.96736 * 3 2 1 19 19 H 1.08992 * 109.47288 * 236.65907 * 18 3 2 20 20 C 1.53003 * 109.46899 * 356.66108 * 18 3 2 21 21 O 1.42897 * 109.47371 * 66.80985 * 20 18 3 22 22 C 1.50702 * 109.47323 * 116.65794 * 18 3 2 23 23 C 1.38241 * 119.99789 * 315.31101 * 22 18 3 24 24 C 1.38239 * 119.99648 * 179.80823 * 23 22 18 25 25 C 1.38236 * 119.99904 * 0.39764 * 24 23 22 26 26 C 1.38231 * 120.00280 * 359.85235 * 25 24 23 27 27 C 1.38235 * 120.00018 * 135.58070 * 22 18 3 28 28 H 1.09004 * 109.46633 * 65.27570 * 1 2 3 29 29 H 1.08999 * 109.46769 * 185.27064 * 1 2 3 30 30 H 1.08996 * 109.47436 * 305.26966 * 1 2 3 31 31 H 1.09001 * 109.47565 * 239.99690 * 2 1 3 32 32 H 1.09001 * 109.46953 * 119.99894 * 2 1 3 33 33 H 0.96993 * 120.00434 * 359.97438 * 6 4 3 34 34 H 1.08999 * 109.47339 * 299.99373 * 7 6 4 35 35 H 1.08996 * 109.47686 * 59.99840 * 7 6 4 36 36 H 1.08999 * 109.47131 * 299.99442 * 8 7 6 37 37 H 1.08996 * 109.47222 * 59.99513 * 8 7 6 38 38 H 1.09004 * 109.46957 * 300.00142 * 9 8 7 39 39 H 1.08996 * 109.47492 * 59.99707 * 9 8 7 40 40 H 0.97004 * 119.99314 * 179.97438 * 13 12 10 41 41 H 1.09001 * 109.46949 * 186.81146 * 20 18 3 42 42 H 1.08999 * 109.47049 * 306.81183 * 20 18 3 43 43 H 0.96698 * 114.00427 * 180.02562 * 21 20 18 44 44 H 1.07994 * 119.99812 * 359.97438 * 23 22 18 45 45 H 1.07999 * 120.00223 * 180.22668 * 24 23 22 46 46 H 1.08002 * 119.99719 * 179.83189 * 25 24 23 47 47 H 1.08000 * 120.00447 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.00018 * 359.97438 * 27 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3064 1.9941 -1.1652 5 8 2.7121 3.1403 -1.1652 6 7 2.1448 1.3364 -2.3305 7 6 2.4585 2.0025 -3.5971 8 6 2.1890 1.0432 -4.7581 9 6 2.5161 1.7389 -6.0810 10 6 2.2500 0.7943 -7.2246 11 1 1.8847 -0.2027 -7.0276 12 6 2.4741 1.2026 -8.5224 13 7 2.2424 0.3779 -9.5203 14 14 3.1067 2.9268 -8.8631 15 1 4.5916 2.9164 -8.8730 16 1 2.6060 3.3858 -10.1836 17 1 2.6252 3.8491 -7.8034 18 6 2.1992 2.0942 1.2670 19 1 1.6129 3.0129 1.2537 20 6 1.7314 1.2072 2.4226 21 8 2.6003 0.0788 2.5389 22 6 3.6566 2.4309 1.4503 23 6 4.6243 1.4797 1.1860 24 6 5.9614 1.7899 1.3503 25 6 6.3303 3.0485 1.7869 26 6 5.3624 3.9980 2.0562 27 6 4.0255 3.6891 1.8881 28 1 -0.3633 0.4299 -0.9335 29 1 -0.3633 -1.0233 0.0944 30 1 -0.3634 0.5934 0.8390 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8215 0.4220 -2.3305 34 1 1.8335 2.8888 -3.7061 35 1 3.5084 2.2953 -3.6034 36 1 2.8138 0.1566 -4.6494 37 1 1.1390 0.7508 -4.7516 38 1 1.8910 2.6254 -6.1895 39 1 3.5659 2.0317 -6.0877 40 1 2.3997 0.6653 -10.4334 41 1 1.7519 1.7788 3.3505 42 1 0.7149 0.8647 2.2292 43 1 2.3629 -0.5286 3.2529 44 1 4.3358 0.4953 0.8485 45 1 6.7176 1.0480 1.1404 46 1 7.3748 3.2900 1.9179 47 1 5.6506 4.9812 2.3976 48 1 3.2693 4.4310 2.0984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883326368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:13 Heat of formation + Delta-G solvation = -47.885792 kcal Electronic energy + Delta-G solvation = -27504.217678 eV Core-core repulsion = 23752.484085 eV Total energy + Delta-G solvation = -3751.733593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71399 -38.95204 -37.67845 -35.66787 -35.31101 -33.44138 -32.51975 -31.25164 -30.85248 -29.98444 -28.68677 -26.87661 -23.97101 -23.38674 -22.60640 -22.49717 -21.13838 -20.49070 -19.25774 -18.16230 -17.97035 -16.89068 -16.71844 -16.46967 -15.72772 -15.26239 -15.02582 -14.88832 -14.46500 -14.31886 -14.13751 -13.80827 -13.50219 -13.42332 -13.26049 -13.18894 -12.68632 -12.66988 -12.39382 -12.15104 -11.95874 -11.83436 -11.77763 -11.55896 -11.04699 -10.99226 -10.94199 -10.85471 -10.36135 -10.08512 -9.91735 -9.75621 -9.61180 -9.19798 -8.93858 -8.83181 -8.72842 -8.53070 -8.41745 -6.04139 -4.02455 1.35726 1.48857 2.69550 3.33798 3.39874 3.41020 3.46223 3.67921 3.91354 4.11127 4.47031 4.49765 4.60389 4.76055 4.86749 4.94961 4.99626 5.02492 5.12940 5.15958 5.27384 5.30282 5.39588 5.53812 5.60064 5.60825 5.63008 5.69361 5.75432 5.98103 6.00817 6.09021 6.10042 6.38330 6.47810 6.48496 6.52285 6.55036 6.65961 6.77639 6.89702 7.01607 7.05019 7.18683 7.27405 7.40668 7.78521 8.12449 8.52870 8.80332 8.99899 9.58462 11.09161 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002897 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.043324 B = 9663.015894 C =10765.949975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 N -0.622 5.622 4 C 0.703 3.297 5 O -0.584 6.584 6 N -0.742 5.742 7 C 0.133 3.867 8 C -0.112 4.112 9 C -0.011 4.011 10 C -0.521 4.521 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.904 5.904 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C 0.211 3.789 19 H 0.092 0.908 20 C 0.070 3.930 21 O -0.556 6.556 22 C -0.080 4.080 23 C -0.074 4.074 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.102 4.102 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.378 0.622 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -0.187 30.790 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.038 4.038 3 N -0.360 5.360 4 C 0.404 3.596 5 O -0.462 6.462 6 N -0.398 5.398 7 C 0.010 3.990 8 C -0.150 4.150 9 C -0.049 4.049 10 C -0.559 4.559 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.543 5.543 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 C 0.107 3.893 19 H 0.110 0.890 20 C -0.008 4.008 21 O -0.362 6.362 22 C -0.081 4.081 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.121 4.121 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.229 0.771 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.225 0.775 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.175 0.950 30.049 30.065 hybrid contribution -0.117 0.160 -0.034 0.201 sum 0.058 1.110 30.015 30.036 Atomic orbital electron populations 1.22345 0.96335 1.02069 1.02543 1.21949 0.94057 0.82949 1.04871 1.47164 1.70477 1.14322 1.04084 1.15918 0.78718 0.84615 0.80326 1.90920 1.52425 1.16712 1.86097 1.45477 1.71631 1.17404 1.05254 1.21481 1.00576 0.96134 0.80842 1.21694 1.01282 0.97956 0.94067 1.19496 0.96388 0.96648 0.92328 1.21102 1.44547 1.00575 0.89642 0.91034 1.25026 0.94946 0.97285 0.96231 1.69917 1.49395 1.35803 0.99186 0.86778 0.79468 0.85395 0.77689 1.20236 1.21390 1.18862 1.19767 0.93215 0.94438 0.81894 0.89039 1.22455 0.93347 0.87849 0.97149 1.86572 1.55996 1.36592 1.57008 1.19837 0.94805 0.93980 0.99499 1.20858 0.92089 0.98905 0.97415 1.21115 0.96196 0.96842 1.00601 1.21087 0.99096 0.93885 0.99898 1.21010 0.93019 0.99133 1.01329 1.20898 0.96164 0.95576 0.99437 0.92306 0.91576 0.92427 0.91071 0.87201 0.77093 0.92110 0.92130 0.92263 0.92232 0.96309 0.96739 0.92731 0.92027 0.91878 0.77480 0.86170 0.86565 0.86597 0.86466 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.95 37.16 0.37 -0.92 16 2 C 0.08 0.73 5.28 -4.05 -0.02 0.70 16 3 N -0.62 -7.21 2.06 -173.13 -0.36 -7.57 16 4 C 0.70 11.11 7.95 -86.91 -0.69 10.42 16 5 O -0.58 -11.51 15.61 5.29 0.08 -11.43 16 6 N -0.74 -11.22 5.42 -65.22 -0.35 -11.57 16 7 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 8 C -0.11 -2.17 5.27 -26.73 -0.14 -2.31 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 11 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 14 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 18 C 0.21 2.19 2.71 -69.08 -0.19 2.00 16 19 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 20 C 0.07 0.44 5.99 37.16 0.22 0.66 16 21 O -0.56 -3.35 9.05 -35.23 -0.32 -3.66 16 22 C -0.08 -0.98 3.67 -104.62 -0.38 -1.36 16 23 C -0.07 -0.94 8.16 -39.58 -0.32 -1.26 16 24 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.10 -1.22 9.67 -39.58 -0.38 -1.60 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 6.24 -51.93 -0.32 0.06 16 31 H 0.07 0.63 6.19 -51.93 -0.32 0.31 16 32 H 0.11 0.80 4.77 -51.93 -0.25 0.56 16 33 H 0.39 5.02 6.14 -40.82 -0.25 4.76 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.31 5.46 -51.93 -0.28 0.03 16 43 H 0.38 0.63 9.12 45.56 0.42 1.05 16 44 H 0.12 1.51 7.29 -52.49 -0.38 1.13 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 1.19 8.01 -52.49 -0.42 0.77 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -35.81 381.37 -9.20 -45.01 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.81 Total: 3.93 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.30 Total: -10.61 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.06 Total: -46.42 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.24 Total: -15.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.81 -9.20 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883326368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.871 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds