Wall clock time and date at job start Tue Mar 31 2020 13:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47080 * 2 1 4 4 C 1.46900 * 110.99688 * 65.06525 * 3 2 1 5 5 C 1.50701 * 109.47049 * 66.04796 * 4 3 2 6 6 O 1.21293 * 120.00019 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00161 * 179.97438 * 5 4 3 8 8 C 1.39922 * 120.00401 * 184.24104 * 7 5 4 9 9 C 1.38878 * 120.06966 * 53.57446 * 8 7 5 10 10 C 1.50701 * 120.03499 * 359.97438 * 9 8 7 11 11 C 1.38111 * 119.93066 * 180.21245 * 9 8 7 12 12 C 1.38285 * 120.06670 * 359.51374 * 11 9 8 13 13 C 1.38278 * 120.14223 * 0.27918 * 12 11 9 14 14 C 1.38109 * 120.07211 * 359.95344 * 13 12 11 15 15 C 1.50695 * 120.03596 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99845 * 301.11254 * 3 2 1 17 17 C 1.52999 * 109.47095 * 288.47548 * 16 3 2 18 18 H 1.09002 * 109.47096 * 59.03284 * 17 16 3 19 19 O 1.42897 * 109.46835 * 299.03096 * 17 16 3 20 20 C 1.50697 * 109.46716 * 179.03290 * 17 16 3 21 21 H 1.07993 * 120.00609 * 359.97438 * 20 17 16 22 22 C 1.37882 * 119.99561 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99841 * 180.02562 * 22 20 17 24 24 Si 1.86796 * 120.00338 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46872 * 90.00144 * 24 22 20 26 26 H 1.48499 * 109.47201 * 210.00427 * 24 22 20 27 27 H 1.48498 * 109.47094 * 330.00590 * 24 22 20 28 28 H 1.09003 * 109.46814 * 185.90482 * 1 2 3 29 29 H 1.08994 * 109.47094 * 305.90233 * 1 2 3 30 30 H 1.09007 * 109.47046 * 65.90602 * 1 2 3 31 31 H 1.09001 * 109.47763 * 240.00168 * 2 1 3 32 32 H 1.08999 * 109.47464 * 119.99598 * 2 1 3 33 33 H 1.08998 * 109.47272 * 306.05079 * 4 3 2 34 34 H 1.09000 * 109.46931 * 186.04306 * 4 3 2 35 35 H 0.97006 * 119.99475 * 4.24063 * 7 5 4 36 36 H 1.08995 * 109.47607 * 263.52480 * 10 9 8 37 37 H 1.09004 * 109.47113 * 23.53086 * 10 9 8 38 38 H 1.08997 * 109.47085 * 143.52450 * 10 9 8 39 39 H 1.07999 * 119.96642 * 179.79204 * 11 9 8 40 40 H 1.08001 * 119.92654 * 180.25929 * 12 11 9 41 41 H 1.07997 * 119.96376 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47808 * 89.99732 * 15 14 13 43 43 H 1.09002 * 109.47125 * 210.00113 * 15 14 13 44 44 H 1.09003 * 109.47265 * 329.99356 * 15 14 13 45 45 H 1.09004 * 109.46825 * 48.47305 * 16 3 2 46 46 H 1.08994 * 109.46868 * 168.47192 * 16 3 2 47 47 H 0.96699 * 114.00402 * 299.99986 * 19 17 16 48 48 H 0.96997 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6500 2.0741 1.2436 5 6 2.3720 1.4385 2.4037 6 8 3.1205 0.5033 2.2133 7 7 2.1861 1.9093 3.6528 8 6 2.9226 1.3785 4.7175 9 6 4.3090 1.3323 4.6499 10 6 5.0224 1.8535 3.4291 11 6 5.0329 0.8037 5.7006 12 6 4.3792 0.3299 6.8233 13 6 2.9992 0.3784 6.8955 14 6 2.2692 0.9014 5.8462 15 6 0.7653 0.9543 5.9260 16 6 1.5270 2.1176 -1.1742 17 6 2.2382 1.6073 -2.4290 18 1 2.0508 0.5397 -2.5441 19 8 3.6437 1.8335 -2.3050 20 6 1.7157 2.3422 -3.6364 21 1 0.9524 3.0973 -3.5205 22 6 2.2115 2.0498 -4.8893 23 7 1.7558 2.6915 -5.9431 24 14 3.5312 0.7432 -5.0901 25 1 2.8901 -0.5786 -5.3076 26 1 4.3852 1.0774 -6.2581 27 1 4.3675 0.6918 -3.8640 28 1 -0.3633 -1.0223 0.1057 29 1 -0.3633 0.6026 0.8324 30 1 -0.3633 0.4196 -0.9382 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5739 1.9937 1.3975 34 1 1.9296 3.1252 1.1735 35 1 1.5416 2.6162 3.8137 36 1 5.2448 1.0250 2.7567 37 1 4.3866 2.5761 2.9175 38 1 5.9520 2.3366 3.7301 39 1 6.1109 0.7645 5.6472 40 1 4.9478 -0.0791 7.6454 41 1 2.4916 0.0072 7.7735 42 1 0.4581 1.9003 6.3718 43 1 0.3452 0.8716 4.9236 44 1 0.4048 0.1292 6.5402 45 1 0.4531 1.9606 -1.2760 46 1 1.7285 3.1815 -1.0495 47 1 3.8846 2.7640 -2.1990 48 1 2.1048 2.4860 -6.8244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929996398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:06 Heat of formation + Delta-G solvation = -69.416582 kcal Electronic energy + Delta-G solvation = -27798.476858 eV Core-core repulsion = 24045.809620 eV Total energy + Delta-G solvation = -3752.667238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79439 -40.07007 -38.81940 -36.92670 -35.70629 -34.43575 -34.38175 -32.07447 -31.39583 -30.76868 -28.66849 -27.55206 -27.49794 -25.98192 -23.95159 -22.75927 -21.96891 -21.24778 -20.83205 -19.32908 -18.50672 -18.00014 -17.32982 -16.90203 -16.76318 -16.40252 -16.31034 -16.09555 -15.26414 -15.19690 -15.10709 -14.82350 -14.77805 -14.57045 -14.32685 -14.01324 -13.84153 -13.62256 -13.54826 -13.46258 -13.03594 -12.97818 -12.78261 -12.65035 -12.53737 -12.45409 -12.40691 -12.14162 -12.09258 -11.78916 -11.59104 -11.05672 -10.98385 -10.80145 -10.63316 -10.07712 -9.47009 -9.19389 -9.03249 -8.34718 -6.47306 0.33944 0.44360 1.38131 1.44277 1.66751 1.76505 2.03456 2.44764 2.80885 3.04083 3.10314 3.77225 3.87934 3.93616 4.05189 4.11703 4.12230 4.21158 4.30989 4.38631 4.40021 4.46838 4.50799 4.55173 4.60357 4.61299 4.64243 4.76114 4.81749 4.88159 4.90515 4.95478 4.99277 5.15337 5.19688 5.33154 5.35683 5.47783 5.48997 5.50706 5.52436 5.63785 5.67897 6.09962 6.10702 6.16251 6.18082 6.53158 6.65531 7.26537 7.29983 7.43224 8.79170 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.002968 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.308775 B = 9431.697593 C =10016.139580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 N -0.523 5.523 4 C 0.034 3.966 5 C 0.517 3.483 6 O -0.536 6.536 7 N -0.667 5.667 8 C 0.121 3.879 9 C -0.094 4.094 10 C -0.100 4.100 11 C -0.129 4.129 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.103 4.103 15 C -0.111 4.111 16 C 0.051 3.949 17 C 0.209 3.791 18 H 0.039 0.961 19 O -0.575 6.575 20 C -0.559 4.559 21 H 0.044 0.956 22 C 0.032 3.968 23 N -0.938 5.938 24 Si 0.931 3.069 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.211 1.211 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.421 0.579 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.364 0.636 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -1.358 29.776 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.080 4.080 3 N -0.246 5.246 4 C -0.097 4.097 5 C 0.305 3.695 6 O -0.411 6.411 7 N -0.317 5.317 8 C 0.028 3.972 9 C -0.096 4.096 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.168 4.168 16 C -0.076 4.076 17 C 0.151 3.849 18 H 0.057 0.943 19 O -0.382 6.382 20 C -0.597 4.597 21 H 0.062 0.938 22 C -0.168 4.168 23 N -0.578 5.578 24 Si 0.756 3.244 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.133 1.133 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.260 0.740 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.211 0.789 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.313 -2.639 29.326 29.446 hybrid contribution -0.738 0.506 -0.939 1.296 sum -0.425 -2.133 28.387 28.470 Atomic orbital electron populations 1.22370 0.97158 1.02940 1.01938 1.22176 0.93340 0.90196 1.02279 1.61800 1.60075 1.02095 1.00662 1.22080 0.99456 0.99933 0.88221 1.20930 0.81717 0.83067 0.83817 1.90704 1.37271 1.28584 1.84494 1.43296 1.42791 1.40360 1.05225 1.17475 0.89988 1.00707 0.88994 1.20088 0.92900 0.99897 0.96733 1.20703 0.99761 1.00268 0.94963 1.21135 1.00564 0.99556 0.93469 1.21433 0.94961 0.99423 0.98197 1.21212 0.94094 0.99996 0.98667 1.20181 0.97571 0.98638 0.94072 1.20769 0.89226 1.03823 1.02935 1.22597 0.97530 0.97779 0.89741 1.19475 0.79415 0.95226 0.90773 0.94282 1.86632 1.25327 1.30533 1.95660 1.21841 1.23108 1.22485 0.92280 0.93796 1.25733 0.97991 0.97546 0.95492 1.70067 1.44708 1.43450 0.99554 0.86102 0.80862 0.78364 0.79088 1.21531 1.22398 1.13261 0.91244 0.91295 0.93072 0.93015 0.90214 0.89489 0.86178 0.73981 0.92437 0.92916 0.90887 0.84886 0.83571 0.83394 0.89354 0.92050 0.90284 0.93772 0.90508 0.78921 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.96 9.21 71.98 0.66 -4.30 16 2 C 0.05 1.57 5.54 86.30 0.48 2.05 16 3 N -0.52 -17.01 4.29 -900.78 -3.87 -20.88 16 4 C 0.03 0.79 5.28 85.56 0.45 1.24 16 5 C 0.52 13.03 5.70 87.66 0.50 13.53 16 6 O -0.54 -18.24 11.59 -3.07 -0.04 -18.28 16 7 N -0.67 -12.56 3.86 -303.50 -1.17 -13.73 16 8 C 0.12 2.61 5.80 38.15 0.22 2.83 16 9 C -0.09 -2.23 5.49 -19.74 -0.11 -2.34 16 10 C -0.10 -2.54 8.27 71.24 0.59 -1.95 16 11 C -0.13 -2.56 9.72 22.25 0.22 -2.34 16 12 C -0.12 -1.95 10.04 22.29 0.22 -1.73 16 13 C -0.12 -1.85 9.70 22.25 0.22 -1.64 16 14 C -0.10 -1.78 5.90 -19.75 -0.12 -1.90 16 15 C -0.11 -1.29 9.69 71.23 0.69 -0.60 16 16 C 0.05 1.86 4.38 86.30 0.38 2.24 16 17 C 0.21 9.67 2.31 29.85 0.07 9.74 16 18 H 0.04 1.93 6.16 -2.39 -0.01 1.91 16 19 O -0.58 -26.41 10.03 -148.98 -1.49 -27.91 16 20 C -0.56 -30.91 9.34 25.60 0.24 -30.67 16 21 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 22 C 0.03 1.87 5.47 84.66 0.46 2.33 16 23 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 24 Si 0.93 46.57 26.99 68.60 1.85 48.42 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 H -0.21 -10.34 5.31 99.48 0.53 -9.81 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.53 6.15 -2.39 -0.01 1.51 16 30 H 0.05 1.53 6.47 -2.38 -0.02 1.51 16 31 H 0.05 1.95 6.71 -2.39 -0.02 1.94 16 32 H 0.08 2.71 5.81 -2.39 -0.01 2.70 16 33 H 0.09 1.63 6.07 -2.39 -0.01 1.61 16 34 H 0.12 2.37 7.87 -2.39 -0.02 2.36 16 35 H 0.42 4.97 8.72 -92.70 -0.81 4.17 16 36 H 0.06 1.79 7.09 -2.39 -0.02 1.78 16 37 H 0.05 1.36 6.31 -2.38 -0.02 1.34 16 38 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 39 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.78 7.46 -2.39 -0.02 0.76 16 44 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 45 H 0.04 1.59 5.85 -2.39 -0.01 1.58 16 46 H 0.08 2.64 7.82 -2.39 -0.02 2.62 16 47 H 0.36 14.79 9.04 -74.06 -0.67 14.12 16 48 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -74.36 372.58 0.09 -74.27 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.67 Total: 29.54 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.17 Total: -13.50 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -4.74 Total: -92.55 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.53 Total: -46.18 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.85 Total: 48.42 kcal Total: -74.36 0.09 -74.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929996398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.850 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds