Wall clock time and date at job start Tue Mar 31 2020 12:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47416 * 2 1 4 4 C 1.50700 * 109.46940 * 239.99490 * 2 1 3 5 5 H 1.07993 * 120.00652 * 239.99993 * 4 2 1 6 6 C 1.37878 * 119.99653 * 60.00647 * 4 2 1 7 7 N 1.31518 * 120.00293 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47087 * 119.99554 * 8 6 4 11 11 H 1.48501 * 109.47023 * 239.99540 * 8 6 4 12 12 N 1.46499 * 109.47055 * 120.00251 * 2 1 3 13 13 C 1.46500 * 120.00481 * 59.99459 * 12 2 1 14 14 C 1.34778 * 119.99933 * 239.99704 * 12 2 1 15 15 O 1.21695 * 119.99829 * 3.39224 * 14 12 2 16 16 C 1.46654 * 120.00274 * 183.38865 * 14 12 2 17 17 C 1.36549 * 125.98856 * 173.20897 * 16 14 12 18 18 C 1.40363 * 106.70720 * 179.97438 * 17 16 14 19 19 C 1.35129 * 107.11557 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.61551 * 180.02562 * 19 18 17 21 21 N 1.46901 * 109.46961 * 89.99925 * 20 19 18 22 22 C 1.46850 * 110.99864 * 294.20508 * 21 20 19 23 23 C 1.53037 * 109.52289 * 174.15884 * 22 21 20 24 24 C 1.53119 * 109.27478 * 59.18651 * 23 22 21 25 25 C 1.53123 * 109.16104 * 302.33960 * 24 23 22 26 26 C 1.46849 * 111.00155 * 169.99958 * 21 20 19 27 27 O 1.33928 * 108.76980 * 359.97438 * 19 18 17 28 28 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46571 * 300.00106 * 1 2 3 30 30 H 1.08995 * 109.46738 * 60.00039 * 1 2 3 31 31 H 0.96998 * 120.00500 * 180.02562 * 7 6 4 32 32 H 1.08992 * 109.47525 * 264.00801 * 13 12 2 33 33 H 1.09007 * 109.46569 * 24.01157 * 13 12 2 34 34 H 1.09003 * 109.46893 * 144.00452 * 13 12 2 35 35 H 1.08004 * 126.64577 * 359.97438 * 17 16 14 36 36 H 1.07998 * 126.44164 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47095 * 209.99575 * 20 19 18 38 38 H 1.08999 * 109.47020 * 329.99688 * 20 19 18 39 39 H 1.08989 * 109.46710 * 294.18238 * 22 21 20 40 40 H 1.09009 * 109.46062 * 54.15282 * 22 21 20 41 41 H 1.08999 * 109.51024 * 299.24696 * 23 22 21 42 42 H 1.09004 * 109.53424 * 179.14170 * 23 22 21 43 43 H 1.09002 * 109.52680 * 182.44325 * 24 23 22 44 44 H 1.08992 * 109.52594 * 62.24908 * 24 23 22 45 45 H 1.08998 * 109.50466 * 297.71774 * 25 24 23 46 46 H 1.09000 * 109.50414 * 177.59379 * 25 24 23 47 47 H 1.09002 * 109.45656 * 305.85709 * 26 21 20 48 48 H 1.09006 * 109.45933 * 65.81694 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 3.1482 -2.2859 -3.6038 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0364 1.1459 1.9229 16 6 3.3433 -0.7469 3.2419 17 6 4.2411 -0.2444 4.1397 18 6 4.4872 -1.2607 5.0761 19 6 3.7388 -2.3256 4.7132 20 6 3.6860 -3.6479 5.4343 21 7 2.6249 -3.6100 6.4494 22 6 2.9427 -2.6419 7.5069 23 6 1.7552 -2.5228 8.4650 24 6 1.4592 -3.8952 9.0760 25 6 1.1790 -4.8961 7.9515 26 6 2.3831 -4.9463 7.0082 27 8 3.0508 -2.0121 3.6077 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.7082 1.1609 -3.4844 32 1 0.7985 -2.1451 2.0879 33 1 1.4257 -2.5697 0.4771 34 1 2.5058 -2.6084 1.8915 35 1 4.6773 0.7436 4.1310 36 1 5.1506 -1.2027 5.9263 37 1 3.4764 -4.4435 4.7193 38 1 4.6446 -3.8368 5.9174 39 1 3.8207 -2.9800 8.0570 40 1 3.1470 -1.6691 7.0593 41 1 0.8802 -2.1715 7.9183 42 1 1.9967 -1.8156 9.2586 43 1 0.5870 -3.8242 9.7259 44 1 2.3198 -4.2295 9.6551 45 1 0.2949 -4.5820 7.3966 46 1 1.0095 -5.8847 8.3781 47 1 2.1811 -5.6474 6.1984 48 1 3.2639 -5.2737 7.5607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931942016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:04 Heat of formation + Delta-G solvation = -16.571283 kcal Electronic energy + Delta-G solvation = -27555.125230 eV Core-core repulsion = 23804.749536 eV Total energy + Delta-G solvation = -3750.375694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53931 -39.26105 -38.72914 -35.45525 -34.41229 -33.01866 -32.63063 -31.16824 -30.37819 -29.21089 -26.66470 -26.02389 -25.21658 -23.66084 -23.34569 -22.19075 -21.27548 -20.36821 -19.98121 -19.09237 -16.96125 -16.79869 -16.37905 -15.89593 -15.72683 -15.45582 -15.05435 -14.71089 -14.45527 -14.28586 -14.11282 -13.57313 -13.42048 -13.30318 -12.97103 -12.90954 -12.76468 -12.48732 -12.47046 -12.31394 -11.76035 -11.58852 -11.49895 -11.23808 -11.04193 -11.01987 -10.83139 -10.72963 -10.70253 -10.66136 -10.25215 -10.18140 -9.80515 -9.37316 -9.15619 -8.71761 -8.44267 -8.33692 -7.60718 -6.07936 -4.16105 1.36928 2.44655 2.85415 3.26409 3.34262 3.37555 3.66702 3.79542 3.93857 4.39394 4.48048 4.50959 4.59633 4.68496 4.86064 4.95445 5.01591 5.09244 5.16210 5.22322 5.23005 5.25272 5.27871 5.40216 5.55846 5.62279 5.65410 5.77425 5.84509 5.87778 5.89382 5.95978 6.07935 6.08950 6.15721 6.49630 6.51806 6.69789 6.75392 6.77762 6.85353 7.04317 7.12737 7.40903 7.51883 7.70303 8.00534 8.16708 8.45335 8.76912 8.95037 9.50137 10.97515 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.002811 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.047829 B = 9957.327673 C =10267.255914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.577 5.577 13 C 0.082 3.918 14 C 0.583 3.417 15 O -0.534 6.534 16 C -0.047 4.047 17 C -0.140 4.140 18 C -0.213 4.213 19 C 0.005 3.995 20 C 0.133 3.867 21 N -0.535 5.535 22 C 0.049 3.951 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.117 4.117 26 C 0.057 3.943 27 O -0.143 6.143 28 H 0.031 0.969 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -12.203 21.985 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.307 5.307 13 C -0.062 4.062 14 C 0.369 3.631 15 O -0.414 6.414 16 C -0.100 4.100 17 C -0.161 4.161 18 C -0.233 4.233 19 C -0.048 4.048 20 C 0.006 3.994 21 N -0.260 5.260 22 C -0.079 4.079 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.070 4.070 27 O -0.038 6.038 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.613 -11.527 21.310 24.369 hybrid contribution 1.185 -0.669 -0.344 1.404 sum 3.799 -12.196 20.966 24.551 Atomic orbital electron populations 1.22084 0.97830 0.99594 1.00959 1.19058 0.91197 0.94510 0.79500 0.91699 1.21350 1.31929 1.13114 0.90158 0.92062 1.24894 0.94896 0.94973 0.98973 1.69890 1.36274 1.22588 1.23728 0.86418 0.78608 0.79595 0.82655 1.19773 1.20893 1.20875 1.48242 1.47312 1.12124 1.22980 1.21796 0.99728 0.82582 1.02064 1.16752 0.79854 0.85957 0.80560 1.90824 1.61317 1.14189 1.75051 1.22658 1.03624 0.83197 1.00472 1.21830 0.99053 1.00949 0.94276 1.21463 1.05424 0.93420 1.02949 1.22415 0.95969 0.97573 0.88845 1.20433 0.94169 0.91444 0.93324 1.61830 1.42677 1.07884 1.13622 1.22225 0.96584 0.97073 0.91972 1.21582 0.98923 0.97014 0.98009 1.21589 1.01324 0.95464 0.97556 1.21589 0.98473 0.99143 0.96313 1.22096 0.97531 0.89564 0.97830 1.84340 1.54774 1.28514 1.36185 0.95020 0.96846 0.88660 0.92673 0.93590 0.89754 0.91637 0.82606 0.83497 0.88661 0.91571 0.94902 0.89853 0.90903 0.91524 0.91807 0.92412 0.90823 0.91478 0.90398 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.97 37.16 0.33 -3.25 16 2 C 0.26 6.73 2.63 -69.08 -0.18 6.55 16 3 H 0.07 1.94 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.42 7.95 -34.44 -0.27 -14.69 16 5 H 0.06 1.66 7.44 -52.49 -0.39 1.27 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.58 -13.18 2.75 -176.82 -0.49 -13.67 16 13 C 0.08 1.53 8.56 59.85 0.51 2.05 16 14 C 0.58 13.21 7.64 -12.86 -0.10 13.11 16 15 O -0.53 -13.73 16.21 5.19 0.08 -13.65 16 16 C -0.05 -0.86 6.77 -36.80 -0.25 -1.11 16 17 C -0.14 -2.23 10.63 -39.39 -0.42 -2.65 16 18 C -0.21 -2.70 9.21 -39.89 -0.37 -3.07 16 19 C 0.00 0.06 6.22 -35.41 -0.22 -0.16 16 20 C 0.13 1.28 5.50 -4.97 -0.03 1.25 16 21 N -0.53 -5.14 4.65 -236.10 -1.10 -6.23 16 22 C 0.05 0.44 5.26 -3.83 -0.02 0.42 16 23 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 24 C -0.12 -0.83 6.00 -26.61 -0.16 -0.99 16 25 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 26 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16 27 O -0.14 -2.32 7.29 5.00 0.04 -2.28 16 28 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.62 7.12 -51.93 -0.37 1.25 16 34 H 0.07 1.13 5.40 -51.93 -0.28 0.85 16 35 H 0.16 2.36 8.06 -52.48 -0.42 1.94 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.10 0.84 7.99 -51.93 -0.41 0.43 16 38 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.03 0.26 8.14 -51.94 -0.42 -0.16 16 40 H 0.08 0.85 5.97 -51.92 -0.31 0.54 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.55 8.02 -51.93 -0.42 0.13 16 48 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -31.18 377.88 -9.66 -40.84 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.88 Total: 0.29 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.61 Total: -2.54 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.96 Total: -44.45 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.12 Total: -15.93 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.18 -9.66 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.268 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds