Wall clock time and date at job start Tue Mar 31 2020 12:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46941 * 2 1 4 4 C 1.50700 * 109.46793 * 120.00123 * 2 1 3 5 5 H 1.08002 * 119.99877 * 120.00495 * 4 2 1 6 6 C 1.37871 * 120.00134 * 299.99631 * 4 2 1 7 7 N 1.31517 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46451 * 60.00435 * 8 6 4 10 10 H 1.48501 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47113 * 300.01006 * 8 6 4 12 12 N 1.46497 * 109.47201 * 240.00150 * 2 1 3 13 13 C 1.46503 * 120.00139 * 299.99698 * 12 2 1 14 14 C 1.34772 * 120.00176 * 120.00156 * 12 2 1 15 15 O 1.21590 * 119.99949 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00202 * 179.97438 * 14 12 2 17 17 C 1.39944 * 120.00347 * 175.11816 * 16 14 12 18 18 C 1.38919 * 120.04320 * 214.75401 * 17 16 14 19 19 C 1.38130 * 120.03969 * 179.74567 * 18 17 16 20 20 C 1.38221 * 120.12117 * 0.55304 * 19 18 17 21 21 C 1.38766 * 120.08146 * 359.70232 * 20 19 18 22 22 O 1.35901 * 120.01674 * 180.02562 * 21 20 19 23 23 C 1.42903 * 117.00057 * 5.15643 * 22 21 20 24 24 C 1.52997 * 109.46965 * 55.22173 * 23 22 21 25 25 C 1.52992 * 109.46944 * 175.22373 * 23 22 21 26 26 C 1.53002 * 109.46848 * 295.22449 * 23 22 21 27 27 C 1.38618 * 119.96058 * 0.02562 * 21 20 19 28 28 H 1.09005 * 109.46750 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47514 * 299.99618 * 1 2 3 30 30 H 1.09002 * 109.47393 * 60.00298 * 1 2 3 31 31 H 0.97005 * 120.00252 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47174 * 89.99757 * 13 12 2 33 33 H 1.08997 * 109.47334 * 210.00064 * 13 12 2 34 34 H 1.09006 * 109.47051 * 330.00662 * 13 12 2 35 35 H 0.97003 * 119.99845 * 355.12044 * 16 14 12 36 36 H 1.07994 * 119.98121 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.93958 * 180.27633 * 19 18 17 38 38 H 1.07999 * 119.95562 * 179.72375 * 20 19 18 39 39 H 1.09003 * 109.47620 * 65.35958 * 24 23 22 40 40 H 1.09000 * 109.47072 * 185.35263 * 24 23 22 41 41 H 1.08995 * 109.47571 * 305.34962 * 24 23 22 42 42 H 1.08997 * 109.47267 * 59.99764 * 25 23 22 43 43 H 1.09001 * 109.47353 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47060 * 299.99767 * 25 23 22 45 45 H 1.08995 * 109.47321 * 64.77515 * 26 23 22 46 46 H 1.09004 * 109.46714 * 184.77516 * 26 23 22 47 47 H 1.09000 * 109.47111 * 304.77264 * 26 23 22 48 48 H 1.08001 * 120.06475 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8074 -1.1189 4.0077 10 1 1.8267 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1286 -1.8911 16 7 3.2429 -0.6711 -3.1835 17 6 3.9612 0.0351 -4.1550 18 6 3.8209 -0.2915 -5.4979 19 6 4.5259 0.4090 -6.4572 20 6 5.3811 1.4285 -6.0831 21 6 5.5291 1.7554 -4.7426 22 8 6.3698 2.7583 -4.3763 23 6 6.9824 3.5079 -5.4275 24 6 5.8995 4.0727 -6.3490 25 6 7.7928 4.6587 -4.8278 26 6 7.9106 2.5948 -6.2310 27 6 4.8190 1.0584 -3.7776 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7081 1.1609 3.4844 32 1 0.7376 -2.1444 -1.9993 33 1 2.4629 -2.5818 -1.9864 34 1 1.5295 -2.5969 -0.4708 35 1 3.0686 -1.6179 -3.3019 36 1 3.1568 -1.0905 -5.7925 37 1 4.4122 0.1568 -7.5011 38 1 5.9344 1.9715 -6.8350 39 1 5.2962 4.7959 -5.8003 40 1 6.3681 4.5633 -7.2021 41 1 5.2628 3.2612 -6.7013 42 1 8.5642 4.2564 -4.1712 43 1 8.2604 5.2303 -5.6295 44 1 7.1315 5.3092 -4.2554 45 1 7.3214 1.8239 -6.7274 46 1 8.4418 3.1840 -6.9786 47 1 8.6299 2.1263 -5.5594 48 1 4.9326 1.3117 -2.7338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934047713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:50 Heat of formation + Delta-G solvation = -8.758147 kcal Electronic energy + Delta-G solvation = -27553.816886 eV Core-core repulsion = 23803.779995 eV Total energy + Delta-G solvation = -3750.036891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85333 -39.83368 -37.70262 -35.45821 -34.37971 -34.04019 -32.74667 -30.06519 -29.86682 -28.82532 -27.62302 -27.17667 -26.12197 -25.20464 -23.00787 -22.67480 -21.32010 -20.14444 -19.13455 -17.95730 -17.11825 -16.82040 -16.34576 -15.75075 -15.59626 -15.36966 -14.99877 -14.79559 -14.18238 -13.93635 -13.82897 -13.51924 -13.27669 -13.11208 -12.82188 -12.68470 -12.52255 -12.39456 -12.26904 -12.06647 -11.86126 -11.67901 -11.61430 -11.50011 -11.05066 -10.94008 -10.85758 -10.76786 -10.66956 -10.41325 -10.24207 -10.15513 -9.83064 -9.31303 -9.10398 -8.42063 -8.17407 -7.86169 -7.51498 -6.06074 -4.14233 1.47879 1.62134 3.04092 3.28880 3.33998 3.34471 3.39807 3.69833 4.07953 4.36949 4.52588 4.56145 4.60584 4.74091 4.92498 5.07848 5.24741 5.25225 5.29561 5.31325 5.39469 5.48942 5.55556 5.57100 5.59356 5.65153 5.74246 5.86554 5.95691 6.01653 6.04329 6.10181 6.28371 6.43391 6.44459 6.57119 6.63862 6.75645 6.83599 7.04241 7.18621 7.18930 7.47768 7.64032 7.69233 7.83651 8.07883 8.22256 8.63777 8.86367 9.21987 9.52636 10.99195 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003010 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.173971 B = 9299.181062 C =10198.255106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.273 3.727 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.084 3.916 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.694 5.694 17 C 0.217 3.783 18 C -0.194 4.194 19 C -0.069 4.069 20 C -0.255 4.255 21 C 0.153 3.847 22 O -0.303 6.303 23 C 0.109 3.891 24 C -0.207 4.207 25 C -0.139 4.139 26 C -0.197 4.197 27 C -0.157 4.157 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 -0.391 -19.992 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.173 3.827 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.338 5.338 13 C -0.060 4.060 14 C 0.397 3.603 15 O -0.451 6.451 16 N -0.344 5.344 17 C 0.120 3.880 18 C -0.215 4.215 19 C -0.088 4.088 20 C -0.274 4.274 21 C 0.107 3.893 22 O -0.217 6.217 23 C 0.071 3.929 24 C -0.263 4.263 25 C -0.196 4.196 26 C -0.253 4.253 27 C -0.179 4.179 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.241 0.759 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.168 0.832 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.203 0.635 -19.370 21.454 hybrid contribution 0.124 -1.068 0.613 1.237 sum 9.327 -0.433 -18.757 20.953 Atomic orbital electron populations 1.22101 0.98182 0.99377 1.00844 1.18893 0.90677 0.94355 0.78824 0.91692 1.21294 1.31935 1.13110 0.90318 0.92298 1.24881 0.94930 0.94978 0.98923 1.69872 1.36220 1.22541 1.23895 0.86544 0.79269 0.79507 0.81988 1.20227 1.21160 1.20272 1.47617 1.50877 1.11510 1.23770 1.21552 0.98298 0.83513 1.02652 1.16017 0.79670 0.85025 0.79597 1.90887 1.62412 1.15497 1.76336 1.42982 1.57661 1.12635 1.21108 1.17198 0.90385 0.92963 0.87483 1.20736 1.05078 1.04765 0.90904 1.20624 0.95122 0.94359 0.98650 1.21876 1.06506 1.03471 0.95539 1.18669 0.90049 0.88147 0.92413 1.86193 1.57181 1.43478 1.34880 1.21738 0.92557 0.91384 0.87241 1.22972 0.99869 1.03339 1.00163 1.21785 0.99904 0.96347 1.01553 1.22864 1.00506 1.00936 1.01042 1.20626 0.97295 0.98870 1.01069 0.95189 0.88739 0.96988 0.92595 0.93795 0.93562 0.89605 0.75910 0.86039 0.85916 0.83187 0.91416 0.91257 0.89096 0.91506 0.90702 0.91370 0.89905 0.91272 0.91406 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.97 37.16 0.33 -3.20 16 2 C 0.27 7.03 2.64 -69.08 -0.18 6.85 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.60 16 4 C -0.53 -14.29 7.99 -34.44 -0.28 -14.57 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.60 -13.03 2.75 -181.00 -0.50 -13.53 16 13 C 0.08 1.39 9.24 59.85 0.55 1.94 16 14 C 0.69 15.07 8.13 -86.92 -0.71 14.36 16 15 O -0.57 -14.74 13.09 5.29 0.07 -14.67 16 16 N -0.69 -11.64 5.22 -14.24 -0.07 -11.72 16 17 C 0.22 3.54 6.30 -83.71 -0.53 3.01 16 18 C -0.19 -2.50 9.96 -39.37 -0.39 -2.89 16 19 C -0.07 -0.78 10.03 -39.63 -0.40 -1.18 16 20 C -0.26 -3.11 6.15 -39.39 -0.24 -3.36 16 21 C 0.15 2.37 6.14 -39.25 -0.24 2.12 16 22 O -0.30 -4.58 9.79 -19.43 -0.19 -4.77 16 23 C 0.11 1.17 1.11 -90.62 -0.10 1.07 16 24 C -0.21 -1.99 8.06 37.16 0.30 -1.69 16 25 C -0.14 -1.27 8.84 37.15 0.33 -0.94 16 26 C -0.20 -1.72 8.26 37.16 0.31 -1.41 16 27 C -0.16 -2.85 8.64 -39.25 -0.34 -3.19 16 28 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 29 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.60 6.29 -51.93 -0.33 0.28 16 34 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16 35 H 0.40 5.36 6.52 -40.82 -0.27 5.10 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.15 1.46 3.06 -52.49 -0.16 1.30 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.92 4.23 -51.93 -0.22 0.70 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.72 4.57 -51.93 -0.24 0.48 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.15 3.25 6.20 -52.49 -0.33 2.92 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -32.45 372.35 -8.30 -40.75 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.14 Total: 8.23 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.68 Total: -1.38 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.05 Total: -49.84 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.12 Total: -19.45 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.45 -8.30 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934047713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.991 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds