Wall clock time and date at job start Tue Mar 31 2020 13:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46832 * 2 1 4 4 C 1.34779 * 120.00273 * 266.47202 * 3 2 1 5 5 O 1.21617 * 120.00145 * 184.79101 * 4 3 2 6 6 C 1.47380 * 119.99854 * 4.79221 * 4 3 2 7 7 C 1.47023 * 127.19036 * 307.07123 * 6 4 3 8 8 C 1.34178 * 105.94896 * 179.97438 * 7 6 4 9 9 O 1.34214 * 109.12624 * 0.02562 * 8 7 6 10 10 C 1.33647 * 110.90748 * 359.76346 * 9 8 7 11 11 C 1.50708 * 125.80013 * 180.26989 * 10 9 8 12 12 C 1.46498 * 119.99802 * 86.47657 * 3 2 1 13 13 H 1.08997 * 109.49539 * 0.03940 * 12 3 2 14 14 C 1.52571 * 109.48826 * 239.99948 * 12 3 2 15 15 C 1.47099 * 114.32827 * 155.00094 * 14 12 3 16 16 C 1.54864 * 110.32203 * 62.79730 * 15 14 12 17 17 N 1.44581 * 109.60094 * 288.73292 * 16 15 14 18 18 C 1.36934 * 118.64359 * 270.72716 * 17 16 15 19 19 H 1.07995 * 120.00236 * 30.66526 * 18 17 16 20 20 C 1.38815 * 119.99809 * 210.65650 * 18 17 16 21 21 N 1.31618 * 119.99905 * 10.14683 * 20 18 17 22 22 Si 1.86791 * 119.99940 * 190.13574 * 20 18 17 23 23 H 1.48505 * 109.47151 * 60.00447 * 22 20 18 24 24 H 1.48498 * 109.47304 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47722 * 300.00471 * 22 20 18 26 26 C 1.47606 * 122.71017 * 90.73170 * 17 16 15 27 27 C 1.50880 * 109.51350 * 120.10074 * 12 3 2 28 28 H 1.09003 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47259 * 299.99632 * 1 2 3 30 30 H 1.09000 * 109.47102 * 60.00406 * 1 2 3 31 31 H 1.09001 * 109.47467 * 240.00575 * 2 1 3 32 32 H 1.08992 * 109.47253 * 120.00198 * 2 1 3 33 33 H 1.07996 * 127.02233 * 359.97438 * 7 6 4 34 34 H 1.08007 * 125.43186 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46572 * 270.13784 * 11 10 9 36 36 H 1.08998 * 109.46656 * 30.13392 * 11 10 9 37 37 H 1.08999 * 109.47225 * 150.13736 * 11 10 9 38 38 H 1.08999 * 108.51290 * 33.74268 * 14 12 3 39 39 H 1.09001 * 108.39016 * 276.16403 * 14 12 3 40 40 H 1.09001 * 109.32214 * 302.54027 * 15 14 12 41 41 H 1.08994 * 109.18791 * 182.97376 * 15 14 12 42 42 H 1.08995 * 109.44696 * 48.77529 * 16 15 14 43 43 H 1.09002 * 109.44631 * 168.69890 * 16 15 14 44 44 H 0.96997 * 119.99870 * 179.97438 * 21 20 18 45 45 H 1.09000 * 108.94578 * 197.18600 * 26 17 16 46 46 H 1.08997 * 108.87884 * 78.50122 * 26 17 16 47 47 H 1.09005 * 109.36626 * 332.05532 * 27 12 3 48 48 H 1.09003 * 109.37077 * 91.66762 * 27 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3106 1.9927 -1.1650 5 8 2.7978 3.1070 -1.1614 6 6 2.0399 1.3109 -2.4433 7 6 2.4810 -0.0329 -2.8446 8 6 1.9999 -0.2245 -4.0824 9 8 1.3171 0.8666 -4.4626 10 6 1.3237 1.7930 -3.4994 11 6 0.6552 3.1419 -3.5690 12 6 2.1889 2.0978 1.2663 13 1 1.9056 1.4470 2.0936 14 6 1.3044 3.3410 1.2709 15 6 0.9300 3.8134 2.6127 16 6 2.1913 4.2374 3.4049 17 7 2.9545 3.0638 3.7661 18 6 2.6738 2.4372 4.9508 19 1 1.6695 2.4570 5.3475 20 6 3.6800 1.7763 5.6419 21 7 4.9350 1.9165 5.2706 22 14 3.2531 0.6882 7.0989 23 1 2.3478 -0.4018 6.6543 24 1 4.4967 0.1014 7.6598 25 1 2.5755 1.5000 8.1415 26 6 4.0239 2.5132 2.9104 27 6 3.6319 2.5101 1.4217 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0715 -0.7244 -2.2621 34 1 2.1406 -1.1145 -4.6781 35 1 1.3513 3.8714 -3.9832 36 1 -0.2263 3.0780 -4.2069 37 1 0.3573 3.4520 -2.5674 38 1 0.3932 3.1195 0.7152 39 1 1.8353 4.1426 0.7574 40 1 0.4202 3.0123 3.1479 41 1 0.2596 4.6675 2.5176 42 1 2.8046 4.8932 2.7870 43 1 1.8910 4.7673 4.3089 44 1 5.6381 1.4550 5.7537 45 1 4.2358 1.4907 3.2227 46 1 4.9232 3.1157 3.0383 47 1 4.2683 1.8088 0.8818 48 1 3.7686 3.5100 1.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997919422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:37 Heat of formation + Delta-G solvation = 5.695338 kcal Electronic energy + Delta-G solvation = -28924.430511 eV Core-core repulsion = 25175.020369 eV Total energy + Delta-G solvation = -3749.410141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67398 -39.91425 -37.30720 -35.57341 -33.66054 -32.83771 -32.05669 -31.51445 -30.63262 -29.52274 -27.12767 -25.89981 -24.41184 -23.59819 -23.20142 -22.14731 -21.43529 -19.94351 -19.29237 -18.60738 -17.17145 -16.62113 -16.44993 -16.05712 -15.74196 -15.08828 -14.63839 -14.41874 -14.17459 -13.88430 -13.64041 -13.41327 -13.40063 -13.14758 -12.99386 -12.97613 -12.86118 -12.39546 -12.27776 -11.92476 -11.88266 -11.81998 -11.29100 -11.05743 -11.00144 -10.80897 -10.78618 -10.35803 -10.19538 -10.05324 -9.82543 -9.75412 -9.63120 -9.50048 -9.29148 -8.67386 -8.37793 -8.26318 -6.53572 -5.72839 -3.22139 1.46186 2.02768 2.69847 3.03065 3.37264 3.38777 3.44648 3.45080 4.39039 4.52342 4.64155 4.84048 4.97699 5.10511 5.27817 5.31126 5.36749 5.40477 5.42579 5.45490 5.53096 5.59079 5.63605 5.66251 5.80182 5.85866 5.97180 6.00268 6.10219 6.17022 6.21711 6.23541 6.46512 6.50759 6.58863 6.66804 6.69383 6.80031 6.91511 6.94059 7.00353 7.12385 7.20704 7.51181 7.73367 7.80887 7.87323 8.48125 8.55048 9.30631 9.96427 10.44335 11.33931 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.003696 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.053333 B = 7573.081807 C = 7980.061239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.586 3.414 5 O -0.528 6.528 6 C -0.224 4.224 7 C -0.188 4.188 8 C -0.040 4.040 9 O -0.178 6.178 10 C 0.049 3.951 11 C -0.075 4.075 12 C 0.166 3.834 13 H 0.097 0.903 14 C -0.109 4.109 15 C -0.142 4.142 16 C 0.157 3.843 17 N -0.592 5.592 18 C -0.260 4.260 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.183 3.817 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.253 0.747 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.050 0.950 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 -4.582 -17.899 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.331 5.331 4 C 0.373 3.627 5 O -0.405 6.405 6 C -0.228 4.228 7 C -0.207 4.207 8 C -0.106 4.106 9 O -0.075 6.075 10 C -0.003 4.003 11 C -0.131 4.131 12 C 0.064 3.936 13 H 0.115 0.885 14 C -0.147 4.147 15 C -0.183 4.183 16 C 0.029 3.971 17 N -0.313 5.313 18 C -0.390 4.390 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.058 3.942 27 C -0.183 4.183 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.223 0.777 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.069 0.931 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.585 -4.020 -18.073 20.409 hybrid contribution -0.017 -1.038 0.920 1.387 sum -8.602 -5.058 -17.153 19.844 Atomic orbital electron populations 1.22143 0.96159 1.01783 1.02295 1.21777 0.94522 0.83000 1.03453 1.48315 1.64505 1.13945 1.06324 1.17273 0.77980 0.85007 0.82459 1.90785 1.43028 1.19528 1.87163 1.21294 1.07727 0.96601 0.97193 1.22823 1.05202 0.95947 0.96728 1.23808 0.99076 0.90696 0.96992 1.83721 1.59808 1.23067 1.40921 1.22550 0.99814 0.91958 0.85960 1.20396 1.00068 0.88048 1.04595 1.20601 0.96396 0.93754 0.82831 0.88454 1.20639 0.98176 0.97874 0.98032 1.21438 1.00439 1.00062 0.96330 1.20706 0.90897 0.89248 0.96270 1.43641 1.40379 1.27697 1.19621 1.19146 0.93123 1.28939 0.97758 0.91978 1.25154 0.95046 1.01165 0.97758 1.70022 0.98466 1.44584 1.41777 0.86410 0.76998 0.80657 0.82864 1.21096 1.21701 1.20914 1.20975 0.89519 0.99615 0.84120 1.22404 0.94343 1.01113 1.00483 0.91950 0.92047 0.92957 0.89818 0.90234 0.82500 0.77730 0.89192 0.90345 0.89075 0.94306 0.91802 0.92395 0.93367 0.94907 0.93750 0.93662 0.91146 0.95523 0.93119 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.10 1.21 5.90 -4.04 -0.02 1.19 16 3 N -0.60 -9.47 2.26 -168.86 -0.38 -9.85 16 4 C 0.59 9.64 6.56 -12.54 -0.08 9.56 16 5 O -0.53 -10.31 14.33 5.26 0.08 -10.23 16 6 C -0.22 -3.05 5.37 -103.28 -0.55 -3.60 16 7 C -0.19 -2.03 9.07 -37.45 -0.34 -2.37 16 8 C -0.04 -0.36 12.03 29.30 0.35 0.00 16 9 O -0.18 -1.96 10.52 7.67 0.08 -1.88 16 10 C 0.05 0.60 7.37 -34.96 -0.26 0.34 16 11 C -0.07 -0.74 10.24 36.01 0.37 -0.37 16 12 C 0.17 3.06 2.17 -69.22 -0.15 2.91 16 13 H 0.10 1.97 7.18 -51.93 -0.37 1.60 16 14 C -0.11 -1.95 4.00 -29.78 -0.12 -2.07 16 15 C -0.14 -2.61 5.74 -28.58 -0.16 -2.77 16 16 C 0.16 3.37 5.65 -4.08 -0.02 3.35 16 17 N -0.59 -14.64 2.26 -172.09 -0.39 -15.03 16 18 C -0.26 -6.98 9.41 -15.06 -0.14 -7.12 16 19 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 20 C 0.01 0.21 4.99 -17.43 -0.09 0.12 16 21 N -0.90 -26.08 10.97 55.49 0.61 -25.47 16 22 Si 0.90 21.48 29.56 -169.99 -5.03 16.45 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.18 4.46 4.64 -2.94 -0.01 4.44 16 27 C -0.14 -2.98 4.23 -27.30 -0.12 -3.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.92 4.20 -51.93 -0.22 0.70 16 32 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 33 H 0.16 1.45 7.23 -52.49 -0.38 1.07 16 34 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16 39 H 0.06 1.24 6.39 -51.93 -0.33 0.90 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.07 1.88 6.48 -51.93 -0.34 1.54 16 46 H 0.03 0.72 7.99 -51.93 -0.41 0.30 16 47 H 0.05 1.04 7.97 -51.93 -0.41 0.62 16 48 H 0.06 1.32 6.61 -51.93 -0.34 0.98 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -31.53 374.12 -8.18 -39.72 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.82 Total: 1.66 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.97 Total: -1.00 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.16 Total: -50.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.16 Total: -12.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.53 -8.18 -39.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997919422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.413 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds