Wall clock time and date at job start Tue Mar 31 2020 12:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47060 * 2 1 4 4 C 1.53000 * 109.47214 * 239.99815 * 2 1 3 5 5 C 1.50700 * 109.47254 * 65.00166 * 4 2 1 6 6 O 1.21277 * 119.99590 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00106 * 179.97438 * 5 4 2 8 8 C 1.46930 * 120.63189 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77787 * 126.36632 * 8 7 5 10 10 C 1.53044 * 109.30927 * 54.63704 * 9 8 7 11 11 C 1.53037 * 109.53804 * 298.63247 * 10 9 8 12 12 H 1.09001 * 109.50135 * 301.41694 * 11 10 9 13 13 N 1.46496 * 109.49810 * 181.31729 * 11 10 9 14 14 C 1.46504 * 120.00202 * 300.00277 * 13 11 10 15 15 C 1.36942 * 120.00134 * 120.00278 * 13 11 10 16 16 H 1.07997 * 119.99754 * 21.99075 * 15 13 11 17 17 C 1.38816 * 119.99973 * 201.99776 * 15 13 11 18 18 N 1.31612 * 120.00056 * 12.71619 * 17 15 13 19 19 Si 1.86799 * 119.99885 * 192.71843 * 17 15 13 20 20 H 1.48506 * 109.46900 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47401 * 119.99840 * 19 17 15 22 22 H 1.48496 * 109.46988 * 240.00189 * 19 17 15 23 23 C 1.46922 * 120.63087 * 179.71830 * 7 5 4 24 24 C 1.50707 * 109.46623 * 119.99755 * 2 1 3 25 25 C 1.34519 * 125.78527 * 239.99752 * 24 2 1 26 26 C 1.41382 * 106.83431 * 179.97438 * 25 24 2 27 27 C 1.34511 * 106.84391 * 359.97438 * 26 25 24 28 28 O 1.34294 * 125.78967 * 59.98290 * 24 2 1 29 29 H 1.08996 * 109.46991 * 60.00190 * 1 2 3 30 30 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47145 * 300.00374 * 1 2 3 32 32 H 1.09003 * 109.46877 * 185.00363 * 4 2 1 33 33 H 1.09000 * 109.46735 * 304.99934 * 4 2 1 34 34 H 1.08996 * 109.59033 * 246.15842 * 8 7 5 35 35 H 1.09002 * 109.58304 * 6.43652 * 8 7 5 36 36 H 1.08997 * 109.49669 * 174.58855 * 9 8 7 37 37 H 1.09004 * 109.49627 * 294.65595 * 9 8 7 38 38 H 1.09001 * 109.46053 * 58.65643 * 10 9 8 39 39 H 1.09006 * 109.45538 * 178.61457 * 10 9 8 40 40 H 1.08999 * 109.47010 * 94.32153 * 14 13 11 41 41 H 1.09003 * 109.47440 * 214.32419 * 14 13 11 42 42 H 1.08999 * 109.47049 * 334.32407 * 14 13 11 43 43 H 0.96999 * 120.00252 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.58680 * 353.41765 * 23 7 5 45 45 H 1.09003 * 109.58509 * 113.84490 * 23 7 5 46 46 H 1.07993 * 126.58309 * 359.94422 * 25 24 2 47 47 H 1.08005 * 126.57618 * 180.02562 * 26 25 24 48 48 H 1.08001 * 125.78568 * 180.25952 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0119 1.0873 -2.3633 7 7 1.9855 -0.3915 -3.7001 8 6 2.7495 -1.6371 -3.8533 9 6 1.9988 -2.5606 -4.8178 10 6 1.7382 -1.8176 -6.1302 11 6 0.8653 -0.5902 -5.8588 12 1 -0.0739 -0.9050 -5.4038 13 7 0.5903 0.1027 -7.1199 14 6 1.6970 0.6268 -7.9242 15 6 -0.7012 0.2606 -7.5469 16 1 -1.5142 0.2116 -6.8378 17 6 -0.9653 0.4836 -8.8914 18 7 -0.0197 0.2969 -9.7876 19 14 -2.6629 1.0486 -9.4285 20 1 -3.5398 1.1825 -8.2376 21 1 -2.5538 2.3615 -10.1137 22 1 -3.2447 0.0502 -10.3612 23 6 1.5988 0.3530 -4.9062 24 6 2.0323 -0.7104 1.2306 25 6 2.8089 -0.1719 2.1879 26 6 3.0375 -1.1846 3.1475 27 6 2.3866 -2.2812 2.7196 28 8 1.7802 -1.9883 1.5576 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 3.7371 -1.4128 -4.2564 35 1 2.8527 -2.1241 -2.8836 36 1 2.6010 -3.4474 -5.0152 37 1 1.0492 -2.8573 -4.3724 38 1 2.6871 -1.5000 -6.5623 39 1 1.2258 -2.4807 -6.8272 40 1 1.9780 -0.1083 -8.6783 41 1 1.3851 1.5491 -8.4143 42 1 2.5513 0.8295 -7.2784 43 1 -0.2041 0.4530 -10.7270 44 1 0.9407 1.1773 -4.6316 45 1 2.4908 0.7426 -5.3968 46 1 3.1858 0.8397 2.2174 47 1 3.6220 -1.0948 4.0513 48 1 2.3541 -3.2344 3.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027649069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:47 Heat of formation + Delta-G solvation = -19.629456 kcal Electronic energy + Delta-G solvation = -27576.210282 eV Core-core repulsion = 23825.701976 eV Total energy + Delta-G solvation = -3750.508307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.46146 -41.31240 -39.08987 -36.80868 -36.08711 -33.98226 -33.77622 -32.85725 -30.92467 -29.65991 -28.78723 -28.06321 -26.14023 -25.28931 -23.79437 -23.03050 -22.61733 -21.28087 -20.62780 -19.76043 -18.80158 -18.53940 -17.68789 -17.15821 -16.92500 -16.67165 -16.49035 -15.75944 -15.66121 -15.37642 -15.17834 -14.99583 -14.54637 -14.39834 -14.06152 -14.00264 -13.70492 -13.67382 -13.63617 -13.45730 -13.24101 -12.89718 -12.82256 -12.54765 -12.45404 -12.31413 -12.24665 -12.09960 -11.97083 -11.89998 -11.76964 -11.62349 -11.37202 -10.78981 -10.74939 -10.64761 -9.66801 -9.33156 -8.77152 -7.84988 -5.32579 0.85837 1.42856 1.44702 1.54974 1.64455 1.75457 1.99212 2.18387 2.49563 3.27869 3.44683 3.61081 3.72247 3.90681 3.97901 4.03220 4.11600 4.14855 4.19615 4.27438 4.35111 4.38099 4.42030 4.60520 4.64464 4.68477 4.74203 4.78545 4.87251 4.91532 4.94136 4.96552 5.03943 5.07832 5.15311 5.16319 5.22300 5.28079 5.37596 5.45959 5.49608 5.54657 5.63574 5.66588 5.71694 6.28306 6.30868 6.49667 7.12989 7.21113 7.85016 8.27085 9.17741 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002668 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.425856 B =10491.339296 C =11003.411071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.012 3.988 3 H 0.100 0.900 4 C -0.124 4.124 5 C 0.509 3.491 6 O -0.581 6.581 7 N -0.606 5.606 8 C 0.104 3.896 9 C -0.123 4.123 10 C -0.123 4.123 11 C 0.168 3.832 12 H 0.043 0.957 13 N -0.611 5.611 14 C 0.180 3.820 15 C -0.263 4.263 16 H 0.062 0.938 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.113 3.887 24 C -0.015 4.015 25 C -0.221 4.221 26 C -0.227 4.227 27 C -0.043 4.043 28 O -0.186 6.186 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.007 0.993 41 H 0.013 0.987 42 H 0.030 0.970 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.154 0.846 47 H 0.166 0.834 48 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -8.173 24.437 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 H 0.118 0.882 4 C -0.163 4.163 5 C 0.299 3.701 6 O -0.462 6.462 7 N -0.339 5.339 8 C -0.017 4.017 9 C -0.162 4.162 10 C -0.163 4.163 11 C 0.060 3.940 12 H 0.061 0.939 13 N -0.334 5.334 14 C 0.036 3.964 15 C -0.393 4.393 16 H 0.080 0.920 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.012 4.012 24 C -0.065 4.065 25 C -0.240 4.240 26 C -0.246 4.246 27 C -0.110 4.110 28 O -0.083 6.083 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.171 0.829 47 H 0.183 0.817 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.851 -7.799 24.140 27.214 hybrid contribution -0.967 0.724 -0.908 1.511 sum 8.883 -7.075 23.232 25.859 Atomic orbital electron populations 1.21904 0.93964 1.02189 1.02631 1.19403 0.96424 0.97860 0.87017 0.88160 1.21771 1.04580 1.00313 0.89684 1.21168 0.78383 0.85369 0.85152 1.90660 1.41963 1.26844 1.86698 1.48272 1.54884 1.25624 1.05123 1.22067 0.94676 0.82971 1.01975 1.21892 1.01385 0.98678 0.94246 1.21938 0.99518 0.96917 0.97877 1.20628 0.96196 0.91376 0.85806 0.93860 1.44111 1.03053 1.64747 1.21449 1.20494 0.87670 0.96214 0.92063 1.19504 0.84970 1.43402 0.91426 0.92035 1.25704 1.00959 1.02023 0.95864 1.70221 1.33770 1.53714 1.00451 0.85216 0.80103 0.77339 0.77873 1.19649 1.21631 1.21545 1.21794 0.99159 0.95184 0.85023 1.22345 1.02033 0.82933 0.99147 1.21908 1.03923 1.02049 0.96168 1.22142 1.06152 0.93415 1.02899 1.24771 0.97918 1.02157 0.86154 1.84000 1.59947 1.28032 1.36296 0.92040 0.92300 0.92186 0.86119 0.86779 0.89759 0.86445 0.87972 0.91963 0.92371 0.94124 0.97451 0.96770 0.95125 0.94195 0.92424 0.91783 0.82863 0.81673 0.74857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.92 71.98 0.64 -2.80 16 2 C 0.01 0.24 2.44 -11.54 -0.03 0.21 16 3 H 0.10 2.17 7.91 -2.39 -0.02 2.15 16 4 C -0.12 -2.31 3.50 29.85 0.10 -2.20 16 5 C 0.51 14.21 7.41 87.66 0.65 14.86 16 6 O -0.58 -21.19 13.38 -3.02 -0.04 -21.23 16 7 N -0.61 -16.84 2.98 -819.67 -2.44 -19.28 16 8 C 0.10 1.99 6.34 86.36 0.55 2.53 16 9 C -0.12 -2.76 6.08 30.67 0.19 -2.57 16 10 C -0.12 -4.14 5.15 30.62 0.16 -3.98 16 11 C 0.17 6.88 2.73 44.94 0.12 7.01 16 12 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 13 N -0.61 -31.21 2.82 -703.06 -1.98 -33.19 16 14 C 0.18 8.99 8.03 127.77 1.03 10.01 16 15 C -0.26 -14.96 9.60 84.03 0.81 -14.16 16 16 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 17 C -0.05 -2.89 5.10 84.86 0.43 -2.46 16 18 N -0.93 -55.87 10.64 21.65 0.23 -55.64 16 19 Si 0.97 46.47 29.57 68.60 2.03 48.50 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 C 0.11 4.14 5.77 86.23 0.50 4.64 16 24 C -0.01 -0.28 5.83 24.84 0.14 -0.13 16 25 C -0.22 -3.86 10.78 22.19 0.24 -3.62 16 26 C -0.23 -3.22 10.91 22.19 0.24 -2.97 16 27 C -0.04 -0.56 12.09 66.97 0.81 0.25 16 28 O -0.19 -3.39 10.65 -2.40 -0.03 -3.42 16 29 H 0.06 1.76 5.95 -2.39 -0.01 1.75 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.66 7.94 -2.39 -0.02 1.64 16 33 H 0.11 1.80 7.70 -2.39 -0.02 1.78 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 1.41 5.93 -2.39 -0.01 1.40 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.01 0.39 7.41 -2.39 -0.02 0.37 16 41 H 0.01 0.75 7.21 -2.39 -0.02 0.73 16 42 H 0.03 1.29 6.35 -2.39 -0.02 1.28 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.06 2.48 7.01 -2.39 -0.02 2.46 16 45 H 0.06 2.30 6.48 -2.39 -0.02 2.29 16 46 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 47 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -72.78 376.66 5.29 -67.49 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.94 Total: 12.15 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.58 Total: 4.62 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.19 Total: -108.11 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -72.78 5.29 -67.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027649069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.856 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds