Wall clock time and date at job start Tue Mar 31 2020 13:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46911 * 2 1 4 4 C 1.36930 * 120.00162 * 88.98185 * 3 2 1 5 5 H 1.07997 * 120.00363 * 223.60043 * 4 3 2 6 6 C 1.38810 * 119.99754 * 43.87223 * 4 3 2 7 7 N 1.31624 * 120.00032 * 201.79429 * 6 4 3 8 8 Si 1.86797 * 120.00111 * 21.80362 * 6 4 3 9 9 H 1.48502 * 109.47275 * 96.59938 * 8 6 4 10 10 H 1.48504 * 109.47013 * 216.59754 * 8 6 4 11 11 H 1.48501 * 109.47103 * 336.59682 * 8 6 4 12 12 C 1.46499 * 119.99608 * 268.98039 * 3 2 1 13 13 H 1.09001 * 109.46749 * 181.79125 * 12 3 2 14 14 C 1.53007 * 109.47210 * 61.79658 * 12 3 2 15 15 C 1.53000 * 109.47489 * 301.79675 * 12 3 2 16 16 N 1.46503 * 109.46994 * 295.60612 * 15 12 3 17 17 C 1.34766 * 120.00179 * 186.12046 * 16 15 12 18 18 O 1.21553 * 119.99968 * 2.29724 * 17 16 15 19 19 C 1.47844 * 120.00384 * 182.30279 * 17 16 15 20 20 C 1.39600 * 120.14360 * 1.25322 * 19 17 16 21 21 C 1.37931 * 119.85438 * 179.79598 * 20 19 17 22 22 C 1.38381 * 120.14681 * 0.48331 * 21 20 19 23 23 C 1.38338 * 120.28985 * 359.74774 * 22 21 20 24 24 C 1.50706 * 119.92692 * 179.97438 * 23 22 21 25 25 O 1.42902 * 109.46926 * 270.01849 * 24 23 22 26 26 C 1.42897 * 113.99967 * 179.97438 * 25 24 23 27 27 C 1.37981 * 120.14779 * 0.02562 * 23 22 21 28 28 H 1.08997 * 109.47554 * 306.16117 * 1 2 3 29 29 H 1.09000 * 109.46948 * 66.16613 * 1 2 3 30 30 H 1.09003 * 109.46958 * 186.15870 * 1 2 3 31 31 H 1.09007 * 109.47449 * 239.99845 * 2 1 3 32 32 H 1.08995 * 109.47436 * 119.99645 * 2 1 3 33 33 H 0.96995 * 119.99871 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46931 * 300.00198 * 14 12 3 35 35 H 1.08997 * 109.46920 * 59.99466 * 14 12 3 36 36 H 1.09000 * 109.47126 * 179.97438 * 14 12 3 37 37 H 1.08997 * 109.47201 * 55.60455 * 15 12 3 38 38 H 1.09000 * 109.46828 * 175.61112 * 15 12 3 39 39 H 0.97000 * 119.99758 * 6.12019 * 16 15 12 40 40 H 1.08000 * 120.06724 * 0.02562 * 20 19 17 41 41 H 1.07996 * 119.92762 * 180.20857 * 21 20 19 42 42 H 1.07995 * 119.85492 * 179.76926 * 22 21 20 43 43 H 1.08995 * 109.46819 * 30.01808 * 24 23 22 44 44 H 1.08997 * 109.46720 * 150.02399 * 24 23 22 45 45 H 1.09002 * 109.47673 * 300.00784 * 26 25 24 46 46 H 1.09009 * 109.46945 * 60.00320 * 26 25 24 47 47 H 1.08995 * 109.47477 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.07872 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2266 2.0339 1.1856 5 1 1.9020 3.0571 1.3032 6 6 2.8602 1.3819 2.2346 7 7 2.6929 1.8053 3.4697 8 14 3.9504 -0.0961 1.8935 9 1 5.3679 0.3407 1.8208 10 1 3.7940 -1.0893 2.9864 11 1 3.5561 -0.7146 0.6024 12 6 2.2837 2.0643 -1.2686 13 1 2.6677 3.0647 -1.0691 14 6 0.9866 2.1670 -2.0736 15 6 3.3188 1.2707 -2.0684 16 7 4.5926 1.2616 -1.3448 17 6 5.6888 0.7256 -1.9170 18 8 5.6307 0.2875 -3.0494 19 6 6.9619 0.6704 -1.1675 20 6 7.0256 1.1487 0.1424 21 6 8.2155 1.0904 0.8376 22 6 9.3470 0.5684 0.2360 23 6 9.2920 0.0971 -1.0635 24 6 10.5294 -0.4692 -1.7109 25 8 11.2419 0.5776 -2.3733 26 6 12.4388 0.1451 -3.0232 27 6 8.1069 0.1453 -1.7685 28 1 -0.3634 0.6063 0.8296 29 1 -0.3633 0.4153 -0.9400 30 1 -0.3633 -1.0218 0.1103 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.1360 1.3499 4.2026 34 1 0.6025 1.1666 -2.2730 35 1 0.2492 2.7324 -1.5038 36 1 1.1840 2.6756 -3.0173 37 1 2.9687 0.2470 -2.2006 38 1 3.4585 1.7360 -3.0441 39 1 4.6471 1.6413 -0.4539 40 1 6.1441 1.5601 0.6117 41 1 8.2652 1.4570 1.8523 42 1 10.2771 0.5284 0.7834 43 1 11.1666 -0.9161 -0.9479 44 1 10.2437 -1.2301 -2.4371 45 1 13.1156 -0.2889 -2.2871 46 1 12.1931 -0.6034 -3.7766 47 1 12.9211 0.9976 -3.5014 48 1 8.0652 -0.2225 -2.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154205017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:51 Heat of formation + Delta-G solvation = -47.973214 kcal Electronic energy + Delta-G solvation = -27744.816661 eV Core-core repulsion = 23993.079277 eV Total energy + Delta-G solvation = -3751.737384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38808 -39.92830 -38.83257 -38.34200 -35.67191 -34.17883 -33.31719 -32.52054 -32.05739 -30.60556 -28.32208 -27.42663 -26.25831 -25.65728 -24.36864 -23.92351 -22.92157 -21.36141 -20.88939 -18.85764 -18.78879 -17.53019 -17.41870 -17.35715 -17.12314 -16.73190 -16.57420 -16.40606 -15.80628 -15.50182 -15.28660 -14.95415 -14.84583 -14.53990 -14.38765 -14.06639 -13.80236 -13.63331 -13.52160 -13.30598 -13.19215 -13.11823 -13.04032 -12.76052 -12.49649 -12.39516 -12.35155 -12.01755 -11.96084 -11.72170 -11.46616 -11.17108 -11.03003 -10.65906 -10.55712 -10.23811 -10.00679 -9.89796 -8.63790 -8.18702 -5.62952 -0.26878 0.17873 1.32697 1.45223 1.54271 1.72570 2.17804 2.45325 2.60472 3.04893 3.12670 3.34299 3.60017 3.70776 3.80895 3.98460 4.02098 4.16821 4.22285 4.28160 4.37139 4.39340 4.49342 4.53234 4.57329 4.58763 4.70026 4.71025 4.75646 4.80009 4.83510 4.88077 4.89058 5.00073 5.08073 5.19091 5.19575 5.29722 5.30652 5.36331 5.38341 5.52243 5.60656 5.77972 5.98867 6.19302 6.27813 6.44584 7.04061 7.08134 7.65603 8.13254 9.00190 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.003778 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.063483 B = 7410.046191 C = 8481.584814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 N -0.603 5.603 4 C -0.257 4.257 5 H 0.039 0.961 6 C 0.001 3.999 7 N -0.942 5.942 8 Si 0.899 3.101 9 H -0.252 1.252 10 H -0.318 1.318 11 H -0.243 1.243 12 C 0.155 3.845 13 H 0.070 0.930 14 C -0.149 4.149 15 C 0.107 3.893 16 N -0.709 5.709 17 C 0.551 3.449 18 O -0.577 6.577 19 C -0.159 4.159 20 C -0.091 4.091 21 C -0.132 4.132 22 C -0.064 4.064 23 C -0.108 4.108 24 C 0.106 3.894 25 O -0.413 6.413 26 C 0.024 3.976 27 C -0.048 4.048 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.405 0.595 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.963 -4.594 -10.291 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 N -0.327 5.327 4 C -0.387 4.387 5 H 0.057 0.943 6 C -0.197 4.197 7 N -0.584 5.584 8 Si 0.726 3.274 9 H -0.177 1.177 10 H -0.247 1.247 11 H -0.167 1.167 12 C 0.048 3.952 13 H 0.088 0.912 14 C -0.208 4.208 15 C -0.018 4.018 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.460 6.460 19 C -0.162 4.162 20 C -0.110 4.110 21 C -0.150 4.150 22 C -0.081 4.081 23 C -0.108 4.108 24 C 0.030 3.970 25 O -0.333 6.333 26 C -0.071 4.071 27 C -0.067 4.067 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.242 0.758 40 H 0.136 0.864 41 H 0.167 0.833 42 H 0.180 0.820 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.112 0.888 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.849 -4.716 -10.930 19.031 hybrid contribution 0.071 -0.631 1.026 1.207 sum 14.919 -5.347 -9.904 18.689 Atomic orbital electron populations 1.22310 0.97474 1.00536 1.01617 1.21245 0.93475 0.85910 0.98389 1.44178 1.75610 1.11629 1.01265 1.18530 1.32326 0.98079 0.89765 0.94342 1.26100 0.98602 1.00206 0.94818 1.70011 1.44748 1.44270 0.99418 0.86827 0.81923 0.80609 0.78025 1.17741 1.24662 1.16694 1.20933 0.93491 0.95249 0.85517 0.91166 1.22146 0.96867 1.02168 0.99594 1.22023 0.82887 1.01199 0.95646 1.46028 1.09457 1.59676 1.20768 1.18562 0.84305 0.77439 0.85760 1.90677 1.86015 1.49831 1.19437 1.19970 0.94272 1.06322 0.95602 1.21680 0.99352 0.96845 0.93137 1.21396 0.92003 1.00320 1.01254 1.21605 0.99094 0.93470 0.93981 1.19822 0.94258 1.01802 0.94896 1.21393 0.89995 0.89187 0.96433 1.87941 1.38894 1.35088 1.71374 1.22955 0.85723 1.01612 0.96853 1.21188 0.90936 0.94956 0.99624 0.94840 0.91418 0.92506 0.92863 0.95566 0.92968 0.92033 0.92968 0.90740 0.92491 0.90303 0.75831 0.86425 0.83283 0.81996 0.89602 0.91397 0.92382 0.93171 0.88793 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.90 71.98 0.71 -4.99 16 2 C 0.13 5.43 3.96 86.38 0.34 5.77 16 3 N -0.60 -25.66 1.68 -678.02 -1.14 -26.80 16 4 C -0.26 -13.37 9.76 84.03 0.82 -12.55 16 5 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 6 C 0.00 0.03 5.28 84.86 0.45 0.48 16 7 N -0.94 -55.75 13.97 21.65 0.30 -55.45 16 8 Si 0.90 41.63 24.26 68.60 1.66 43.30 16 9 H -0.25 -10.61 4.73 99.48 0.47 -10.14 16 10 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 11 H -0.24 -10.84 5.22 99.48 0.52 -10.32 16 12 C 0.15 5.46 2.77 44.99 0.12 5.59 16 13 H 0.07 2.59 7.89 -2.39 -0.02 2.58 16 14 C -0.15 -4.30 8.39 71.98 0.60 -3.70 16 15 C 0.11 3.69 5.04 86.38 0.44 4.13 16 16 N -0.71 -26.44 5.26 -465.99 -2.45 -28.89 16 17 C 0.55 20.96 7.77 86.79 0.67 21.64 16 18 O -0.58 -24.11 16.32 -3.88 -0.06 -24.18 16 19 C -0.16 -5.40 5.87 -20.09 -0.12 -5.52 16 20 C -0.09 -2.97 8.58 22.53 0.19 -2.78 16 21 C -0.13 -3.46 10.03 22.23 0.22 -3.23 16 22 C -0.06 -1.39 9.69 22.33 0.22 -1.18 16 23 C -0.11 -2.58 5.50 -19.90 -0.11 -2.69 16 24 C 0.11 1.91 6.06 71.24 0.43 2.34 16 25 O -0.41 -8.57 10.69 -148.98 -1.59 -10.17 16 26 C 0.02 0.31 11.01 113.37 1.25 1.56 16 27 C -0.05 -1.42 9.24 22.53 0.21 -1.22 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 2.11 5.69 -2.39 -0.01 2.10 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.99 6.25 -2.38 -0.01 1.97 16 32 H 0.03 1.18 4.13 -2.39 -0.01 1.17 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.06 1.70 6.10 -2.39 -0.01 1.68 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.02 6.42 -2.39 -0.02 2.01 16 38 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 39 H 0.40 15.74 5.01 -92.71 -0.46 15.27 16 40 H 0.12 4.18 4.63 -2.91 -0.01 4.17 16 41 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 44 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 45 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.13 3.90 7.65 -2.91 -0.02 3.88 16 Total: -1.00 -67.51 375.63 3.25 -64.26 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.07 Total: 34.27 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.45 Total: 3.66 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -3.28 Total: -111.14 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.66 Total: -34.34 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.66 Total: 43.30 kcal Total: -67.51 3.25 -64.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154205017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds