Wall clock time and date at job start Tue Mar 31 2020 13:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46891 * 2 1 4 4 C 1.36929 * 120.00375 * 275.73121 * 3 2 1 5 5 H 1.08002 * 119.99842 * 33.26985 * 4 3 2 6 6 C 1.38811 * 120.00203 * 213.27326 * 4 3 2 7 7 N 1.31620 * 120.00217 * 17.26747 * 6 4 3 8 8 Si 1.86800 * 120.00128 * 197.26592 * 6 4 3 9 9 H 1.48507 * 109.47056 * 59.99744 * 8 6 4 10 10 H 1.48490 * 109.47329 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47241 * 300.00452 * 8 6 4 12 12 C 1.46499 * 119.99560 * 95.73512 * 3 2 1 13 13 H 1.09002 * 109.47169 * 180.08889 * 12 3 2 14 14 C 1.53000 * 109.47472 * 60.08980 * 12 3 2 15 15 C 1.53000 * 109.47261 * 300.08675 * 12 3 2 16 16 N 1.46502 * 109.47082 * 304.99901 * 15 12 3 17 17 C 1.34769 * 120.00181 * 179.97438 * 16 15 12 18 18 O 1.21592 * 120.00278 * 0.02562 * 17 16 15 19 19 C 1.47537 * 120.00303 * 180.02562 * 17 16 15 20 20 C 1.39714 * 120.18832 * 359.72529 * 19 17 16 21 21 C 1.37789 * 119.90418 * 179.78702 * 20 19 17 22 22 C 1.50704 * 119.84827 * 180.25616 * 21 20 19 23 23 C 1.38547 * 120.30064 * 0.49307 * 21 20 19 24 24 C 1.38051 * 120.39355 * 359.73830 * 23 21 20 25 25 C 1.38707 * 120.08020 * 0.02576 * 24 23 21 26 26 O 1.35655 * 120.14773 * 179.97438 * 25 24 23 27 27 C 1.42899 * 117.00007 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46820 * 299.99832 * 1 2 3 30 30 H 1.08998 * 109.46869 * 60.00149 * 1 2 3 31 31 H 1.09003 * 109.46820 * 240.00168 * 2 1 3 32 32 H 1.09004 * 109.46880 * 120.00289 * 2 1 3 33 33 H 0.96996 * 120.00090 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46710 * 299.99617 * 14 12 3 35 35 H 1.08993 * 109.47386 * 59.99246 * 14 12 3 36 36 H 1.09001 * 109.47566 * 179.97438 * 14 12 3 37 37 H 1.08997 * 109.46981 * 65.00006 * 15 12 3 38 38 H 1.09003 * 109.47220 * 185.00724 * 15 12 3 39 39 H 0.97006 * 119.99809 * 0.02562 * 16 15 12 40 40 H 1.08001 * 120.04779 * 0.02562 * 20 19 17 41 41 H 1.09001 * 109.47178 * 270.23720 * 22 21 20 42 42 H 1.09000 * 109.47025 * 30.23553 * 22 21 20 43 43 H 1.08997 * 109.47049 * 150.23761 * 22 21 20 44 44 H 1.08005 * 119.80184 * 179.71875 * 23 21 20 45 45 H 1.07993 * 119.96166 * 179.97438 * 24 23 21 46 46 H 1.09005 * 109.47240 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47442 * 300.00093 * 27 26 25 48 48 H 1.09004 * 109.46974 * 60.00434 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4370 1.8811 -1.9830 6 6 3.1501 2.9987 -1.3437 7 7 4.1871 2.9918 -0.5332 8 14 3.0446 4.2632 -2.7146 9 1 1.8242 5.0897 -2.5328 10 1 4.2443 5.1374 -2.6752 11 1 2.9808 3.5681 -4.0254 12 6 2.3820 2.0295 1.2624 13 1 2.7189 3.0471 1.0645 14 6 3.5078 1.2413 1.9348 15 6 1.1631 2.0666 2.1864 16 7 0.0466 2.7172 1.4960 17 6 -1.1389 2.8628 2.1203 18 8 -1.2818 2.4546 3.2567 19 6 -2.2633 3.5175 1.4249 20 6 -2.1019 3.9932 0.1212 21 6 -3.1573 4.5998 -0.5244 22 6 -2.9835 5.1072 -1.9327 23 6 -4.3762 4.7496 0.1171 24 6 -4.5479 4.2885 1.4069 25 6 -3.4978 3.6711 2.0701 26 8 -3.6649 3.2179 3.3378 27 6 -4.9509 3.4090 3.9308 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.8963 3.6436 -0.6475 34 1 3.1708 0.2237 2.1328 35 1 4.3762 1.2148 1.2766 36 1 3.7787 1.7239 2.8739 37 1 0.8803 1.0490 2.4558 38 1 1.4081 2.6267 3.0888 39 1 0.1605 3.0426 0.5893 40 1 -1.1524 3.8822 -0.3813 41 1 -2.6370 6.1404 -1.9065 42 1 -2.2500 4.4912 -2.4530 43 1 -3.9376 5.0572 -2.4573 44 1 -5.1967 5.2304 -0.3949 45 1 -5.5009 4.4094 1.9005 46 1 -4.9486 3.0027 4.9423 47 1 -5.1792 4.4742 3.9681 48 1 -5.7058 2.8963 3.3346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154212283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:05 Heat of formation + Delta-G solvation = -45.472793 kcal Electronic energy + Delta-G solvation = -28537.438148 eV Core-core repulsion = 24785.809190 eV Total energy + Delta-G solvation = -3751.628958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58407 -40.10118 -38.63398 -38.43738 -35.20255 -33.72936 -33.21372 -32.77815 -31.94643 -29.91810 -28.71055 -27.22648 -26.77429 -25.77653 -24.58854 -23.37643 -22.32234 -21.15432 -20.89109 -19.35750 -18.67671 -17.86654 -17.54120 -16.82057 -16.72732 -16.33957 -16.31073 -15.75067 -15.52922 -15.30894 -15.16773 -14.67544 -14.48831 -14.38467 -14.31811 -13.96753 -13.75515 -13.47867 -13.21411 -13.10400 -12.96785 -12.85104 -12.76779 -12.72169 -12.51987 -12.48490 -12.35894 -12.08829 -12.06956 -11.84693 -11.75539 -11.35267 -11.16843 -10.76004 -10.40353 -10.13699 -9.81699 -9.04565 -8.51339 -7.79711 -5.30051 -0.11636 0.37813 1.52735 1.54843 1.59939 1.95193 2.35027 2.40737 2.56949 2.84359 3.34544 3.65152 3.74274 3.79088 3.93686 4.13245 4.26126 4.35696 4.39001 4.39580 4.45545 4.47809 4.57368 4.65733 4.69262 4.73333 4.80793 4.88095 4.89201 4.93075 4.94896 4.98263 5.06362 5.07247 5.21677 5.24791 5.27178 5.31805 5.54300 5.58370 5.60500 5.70371 5.77883 5.78762 5.88376 6.44606 6.51908 6.75438 7.25659 7.37052 7.94070 8.47704 9.24311 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.004853 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.198128 B = 5768.171026 C = 7195.137162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.061 0.939 6 C -0.030 4.030 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.302 1.302 11 H -0.281 1.281 12 C 0.184 3.816 13 H 0.070 0.930 14 C -0.134 4.134 15 C 0.117 3.883 16 N -0.698 5.698 17 C 0.548 3.452 18 O -0.575 6.575 19 C -0.194 4.194 20 C -0.056 4.056 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.045 4.045 24 C -0.212 4.212 25 C 0.159 3.841 26 O -0.317 6.317 27 C 0.013 3.987 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.248 0.752 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.407 0.593 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.167 0.833 45 H 0.165 0.835 46 H 0.108 0.892 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 4.127 1.583 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.228 1.228 11 H -0.207 1.207 12 C 0.076 3.924 13 H 0.088 0.912 14 C -0.193 4.193 15 C -0.009 4.009 16 N -0.349 5.349 17 C 0.337 3.663 18 O -0.457 6.457 19 C -0.197 4.197 20 C -0.075 4.075 21 C -0.136 4.136 22 C -0.166 4.166 23 C -0.063 4.063 24 C -0.230 4.230 25 C 0.111 3.889 26 O -0.229 6.229 27 C -0.082 4.082 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.245 0.755 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.185 0.815 45 H 0.182 0.818 46 H 0.126 0.874 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.488 3.814 2.512 19.044 hybrid contribution 0.610 0.638 -0.894 1.256 sum -17.878 4.452 1.618 18.495 Atomic orbital electron populations 1.22266 0.98362 1.00131 1.00750 1.20816 0.92769 0.86310 0.98616 1.43975 1.76119 1.09110 1.02011 1.19203 1.08024 1.18246 0.93851 0.92092 1.25721 0.94401 1.02942 0.99743 1.70136 1.08323 1.36329 1.41054 0.85625 0.76789 0.79670 0.80030 1.19693 1.22826 1.20748 1.20332 0.89725 0.97985 0.84331 0.91165 1.21875 0.99578 0.98728 0.99156 1.21895 0.87687 0.96097 0.95236 1.45844 1.10798 1.59368 1.18848 1.18446 0.83058 0.79139 0.85678 1.90718 1.83682 1.51927 1.19364 1.19430 0.93440 1.10208 0.96671 1.21224 0.99628 0.94802 0.91807 1.20055 0.93567 1.01496 0.98464 1.20792 1.03733 1.01373 0.90725 1.21416 0.97021 0.94746 0.93115 1.21524 0.99127 1.04980 0.97403 1.19284 0.93009 0.92086 0.84486 1.86341 1.36012 1.75427 1.25140 1.23427 0.82396 1.02845 0.99484 0.92716 0.93938 0.94057 0.94823 0.93894 0.94276 0.93956 0.93103 0.93273 0.93242 0.93166 0.75522 0.85628 0.90579 0.92126 0.89163 0.81519 0.81756 0.87364 0.90936 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 9.87 71.98 0.71 -5.04 16 2 C 0.14 5.76 5.67 86.38 0.49 6.25 16 3 N -0.59 -27.04 1.85 -678.01 -1.25 -28.29 16 4 C -0.26 -13.09 9.26 84.03 0.78 -12.31 16 5 H 0.06 3.02 7.89 -2.91 -0.02 2.99 16 6 C -0.03 -1.56 4.85 84.86 0.41 -1.15 16 7 N -0.91 -49.55 10.60 21.65 0.23 -49.32 16 8 Si 0.95 41.55 29.59 68.60 2.03 43.58 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.18 8.18 1.92 44.99 0.09 8.27 16 13 H 0.07 3.58 6.04 -2.39 -0.01 3.56 16 14 C -0.13 -5.65 9.05 71.98 0.65 -5.00 16 15 C 0.12 4.81 4.34 86.38 0.37 5.19 16 16 N -0.70 -27.97 3.94 -466.27 -1.84 -29.81 16 17 C 0.55 22.36 7.53 86.70 0.65 23.01 16 18 O -0.58 -26.76 15.16 16.91 0.26 -26.51 16 19 C -0.19 -6.67 5.89 -20.01 -0.12 -6.78 16 20 C -0.06 -1.67 9.18 22.52 0.21 -1.46 16 21 C -0.14 -3.11 5.87 -19.90 -0.12 -3.23 16 22 C -0.11 -1.98 10.00 71.24 0.71 -1.27 16 23 C -0.05 -0.83 9.68 22.30 0.22 -0.61 16 24 C -0.21 -4.39 9.03 22.34 0.20 -4.19 16 25 C 0.16 4.78 6.70 22.84 0.15 4.93 16 26 O -0.32 -9.95 8.57 -68.78 -0.59 -10.54 16 27 C 0.01 0.23 9.81 113.37 1.11 1.34 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.66 4.99 -2.39 -0.01 1.65 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.04 1.69 6.45 -2.38 -0.02 1.68 16 33 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 34 H 0.04 1.64 6.67 -2.38 -0.02 1.62 16 35 H 0.05 2.43 7.39 -2.39 -0.02 2.41 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 2.08 7.05 -2.39 -0.02 2.06 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.41 16.44 5.93 -92.70 -0.55 15.89 16 40 H 0.13 3.95 6.40 -2.91 -0.02 3.93 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 44 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.17 2.21 6.30 -2.91 -0.02 2.19 16 46 H 0.11 1.69 8.14 -2.38 -0.02 1.68 16 47 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 48 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 Total: -1.00 -65.64 379.58 5.77 -59.87 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.41 Total: 33.09 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.52 Total: 7.95 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -2.86 Total: -107.43 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.33 Total: -37.05 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -65.64 5.77 -59.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154212283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.393 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds