Wall clock time and date at job start Tue Mar 31 2020 13:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47478 * 2 1 4 4 C 1.36946 * 120.00055 * 88.93999 * 3 2 1 5 5 H 1.07996 * 120.00053 * 223.51787 * 4 3 2 6 6 C 1.38813 * 119.99677 * 43.79304 * 4 3 2 7 7 N 1.31614 * 119.99857 * 201.90882 * 6 4 3 8 8 Si 1.86802 * 119.99881 * 21.91664 * 6 4 3 9 9 H 1.48503 * 109.47281 * 96.59289 * 8 6 4 10 10 H 1.48497 * 109.46934 * 216.59132 * 8 6 4 11 11 H 1.48497 * 109.47167 * 336.59257 * 8 6 4 12 12 C 1.46499 * 119.99966 * 268.94701 * 3 2 1 13 13 H 1.09001 * 109.46842 * 181.80837 * 12 3 2 14 14 C 1.52998 * 109.47114 * 61.80987 * 12 3 2 15 15 C 1.52994 * 109.47092 * 301.80583 * 12 3 2 16 16 N 1.46500 * 109.47597 * 295.61528 * 15 12 3 17 17 C 1.34775 * 120.00516 * 186.10728 * 16 15 12 18 18 O 1.21548 * 119.99771 * 2.30247 * 17 16 15 19 19 C 1.47859 * 120.00121 * 182.29781 * 17 16 15 20 20 C 1.39603 * 120.11864 * 1.25987 * 19 17 16 21 21 C 1.37961 * 119.96432 * 179.71879 * 20 19 17 22 22 C 1.38286 * 120.20691 * 0.55491 * 21 20 19 23 23 C 1.50706 * 119.87863 * 179.70018 * 22 21 20 24 24 C 1.38802 * 120.23824 * 359.72085 * 22 21 20 25 25 O 1.35917 * 119.98566 * 179.97438 * 24 22 21 26 26 C 1.42898 * 116.99966 * 180.02562 * 25 24 22 27 27 C 1.38495 * 120.03292 * 359.97438 * 24 22 21 28 28 H 1.09001 * 109.46794 * 306.16569 * 1 2 3 29 29 H 1.08998 * 109.46761 * 66.16567 * 1 2 3 30 30 H 1.08999 * 109.46867 * 186.16962 * 1 2 3 31 31 H 1.09000 * 109.47570 * 239.99421 * 2 1 3 32 32 H 1.09004 * 109.47421 * 119.99933 * 2 1 3 33 33 H 0.97003 * 119.99907 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47492 * 60.00276 * 14 12 3 35 35 H 1.09007 * 109.46814 * 180.02562 * 14 12 3 36 36 H 1.09001 * 109.47143 * 299.99665 * 14 12 3 37 37 H 1.08999 * 109.47049 * 55.61415 * 15 12 3 38 38 H 1.09001 * 109.47479 * 175.61671 * 15 12 3 39 39 H 0.97003 * 119.99808 * 6.11057 * 16 15 12 40 40 H 1.08000 * 120.01775 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.89660 * 180.27368 * 21 20 19 42 42 H 1.08994 * 109.46891 * 270.01802 * 23 22 21 43 43 H 1.08998 * 109.47217 * 30.02033 * 23 22 21 44 44 H 1.09003 * 109.46621 * 150.02037 * 23 22 21 45 45 H 1.08997 * 109.47376 * 60.00048 * 26 25 24 46 46 H 1.09008 * 109.46951 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47229 * 299.99579 * 26 25 24 48 48 H 1.08004 * 120.10599 * 180.02562 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2260 2.0340 1.1858 5 1 1.9025 3.0578 1.3024 6 6 2.8573 1.3817 2.2359 7 7 2.6871 1.8044 3.4706 8 14 3.9486 -0.0959 1.8965 9 1 5.3662 0.3411 1.8270 10 1 3.7900 -1.0896 2.9886 11 1 3.5573 -0.7139 0.6042 12 6 2.2846 2.0640 -1.2685 13 1 2.6688 3.0643 -1.0690 14 6 0.9880 2.1670 -2.0741 15 6 3.3198 1.2700 -2.0676 16 7 4.5933 1.2604 -1.3434 17 6 5.6896 0.7237 -1.9149 18 8 5.6319 0.2855 -3.0471 19 6 6.9624 0.6681 -1.1645 20 6 7.0249 1.1469 0.1454 21 6 8.2127 1.0882 0.8446 22 6 9.3461 0.5667 0.2481 23 6 10.6415 0.5123 1.0164 24 6 9.2951 0.0935 -1.0558 25 8 10.4123 -0.4175 -1.6372 26 6 10.2877 -0.8857 -2.9816 27 6 8.1063 0.1419 -1.7647 28 1 -0.3633 0.6065 0.8297 29 1 -0.3633 0.4153 -0.9400 30 1 -0.3633 -1.0217 0.1104 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.1286 1.3488 4.2045 34 1 0.2505 2.7327 -1.5049 35 1 1.1862 2.6747 -3.0182 36 1 0.6037 1.1667 -2.2736 37 1 2.9695 0.2464 -2.2000 38 1 3.4604 1.7350 -3.0434 39 1 4.6475 1.6403 -0.4525 40 1 6.1428 1.5592 0.6126 41 1 8.2587 1.4548 1.8594 42 1 11.1999 1.4339 0.8528 43 1 10.4289 0.4001 2.0795 44 1 11.2325 -0.3366 0.6725 45 1 9.9725 -0.0641 -3.6248 46 1 11.2497 -1.2673 -3.3240 47 1 9.5460 -1.6834 -3.0212 48 1 8.0651 -0.2263 -2.7792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154237793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:08 Heat of formation + Delta-G solvation = -24.895106 kcal Electronic energy + Delta-G solvation = -28162.999239 eV Core-core repulsion = 24412.262597 eV Total energy + Delta-G solvation = -3750.736642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50516 -39.23715 -37.44661 -37.00338 -34.08403 -32.97004 -32.14865 -31.01287 -30.15759 -28.89104 -27.79895 -27.51910 -25.44382 -23.68147 -22.40627 -22.34184 -22.07509 -20.17019 -19.58759 -18.12859 -16.94226 -16.57383 -16.25387 -15.91388 -15.63416 -15.52882 -15.24556 -14.93710 -14.25730 -14.07653 -13.85935 -13.59804 -13.46662 -13.19936 -12.84247 -12.73698 -12.37669 -12.32909 -12.23097 -12.07847 -12.06960 -11.92115 -11.61187 -11.54210 -11.40675 -11.16111 -11.12448 -10.86231 -10.55872 -10.25332 -10.02466 -9.85141 -9.66999 -9.29681 -8.89957 -8.60084 -8.56804 -8.15261 -6.81449 -6.11542 -3.59394 0.87548 1.39886 3.02537 3.13976 3.21489 3.38585 3.45841 3.57220 3.93456 4.43123 4.68965 4.77017 4.88021 4.94858 5.03083 5.06348 5.15352 5.18454 5.22976 5.35928 5.44258 5.47617 5.57967 5.62329 5.76311 5.77374 5.92495 5.96668 6.04778 6.04981 6.12246 6.23642 6.24420 6.34906 6.36796 6.38488 6.44554 6.58778 6.65318 6.68675 6.71926 6.88921 6.93432 7.14021 7.25650 7.91431 7.99008 8.35062 8.52003 8.92227 9.60677 10.06996 11.03229 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015151 B = 0.004392 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.621790 B = 6373.029902 C = 7601.474650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 N -0.598 5.598 4 C -0.278 4.278 5 H 0.075 0.925 6 C 0.047 3.953 7 N -0.893 5.893 8 Si 0.840 3.160 9 H -0.271 1.271 10 H -0.297 1.297 11 H -0.250 1.250 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.102 3.898 16 N -0.703 5.703 17 C 0.553 3.447 18 O -0.553 6.553 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.095 4.095 23 C -0.106 4.106 24 C 0.110 3.890 25 O -0.315 6.315 26 C 0.025 3.975 27 C -0.147 4.147 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.099 0.901 47 H 0.056 0.944 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.522 -2.528 -8.908 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.321 5.321 4 C -0.406 4.406 5 H 0.092 0.908 6 C -0.155 4.155 7 N -0.532 5.532 8 Si 0.668 3.332 9 H -0.198 1.198 10 H -0.225 1.225 11 H -0.175 1.175 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.217 4.217 15 C -0.024 4.024 16 N -0.354 5.354 17 C 0.339 3.661 18 O -0.434 6.434 19 C -0.105 4.105 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.096 4.096 23 C -0.163 4.163 24 C 0.065 3.935 25 O -0.228 6.228 26 C -0.070 4.070 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.247 0.753 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.075 0.925 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.666 -2.866 -9.419 15.265 hybrid contribution 0.278 -0.840 0.310 0.937 sum 11.943 -3.706 -9.109 15.471 Atomic orbital electron populations 1.22431 0.99306 0.99478 1.01674 1.21202 0.91949 0.86653 0.98772 1.44159 1.75226 1.11382 1.01342 1.18723 1.34226 0.99369 0.88304 0.90790 1.25624 0.97284 0.97428 0.95207 1.69890 1.42821 1.42088 0.98421 0.87740 0.82453 0.84088 0.78933 1.19832 1.22459 1.17480 1.20829 0.91827 0.96007 0.86603 0.90355 1.22259 0.98936 1.01496 0.99010 1.22062 0.83465 1.01591 0.95239 1.45934 1.09009 1.59543 1.20943 1.18226 0.83704 0.78189 0.85938 1.90697 1.85558 1.48627 1.18484 1.19791 0.93868 1.02125 0.94753 1.21588 0.98940 0.99170 0.93300 1.20859 0.91208 0.98628 1.00147 1.19438 0.97075 1.01063 0.92016 1.20651 0.93751 1.02709 0.99157 1.18630 0.85711 0.96624 0.92537 1.86037 1.31895 1.75819 1.29073 1.23072 1.03596 0.99232 0.81084 1.21252 0.91301 1.02986 1.01091 0.92153 0.93445 0.94695 0.94510 0.93264 0.92652 0.92089 0.93550 0.92752 0.92061 0.91798 0.75295 0.84548 0.84629 0.91130 0.91412 0.91089 0.92491 0.88275 0.92527 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.90 37.16 0.37 -2.77 16 2 C 0.14 2.88 3.97 -4.04 -0.02 2.86 16 3 N -0.60 -12.73 1.68 -165.67 -0.28 -13.01 16 4 C -0.28 -7.01 9.76 -15.05 -0.15 -7.16 16 5 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 6 C 0.05 1.23 5.27 -17.43 -0.09 1.13 16 7 N -0.89 -25.48 13.97 55.49 0.78 -24.71 16 8 Si 0.84 19.63 24.26 -169.99 -4.12 15.50 16 9 H -0.27 -5.89 4.75 56.52 0.27 -5.62 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 11 H -0.25 -5.74 5.22 56.52 0.30 -5.45 16 12 C 0.15 2.79 2.77 -67.94 -0.19 2.60 16 13 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 14 C -0.16 -2.43 8.39 37.16 0.31 -2.12 16 15 C 0.10 1.80 5.04 -4.04 -0.02 1.78 16 16 N -0.70 -13.14 5.26 -61.25 -0.32 -13.46 16 17 C 0.55 10.51 7.77 -12.32 -0.10 10.41 16 18 O -0.55 -11.50 16.32 5.32 0.09 -11.41 16 19 C -0.10 -1.77 5.87 -104.99 -0.62 -2.39 16 20 C -0.11 -1.86 8.58 -39.17 -0.34 -2.20 16 21 C -0.09 -1.32 9.67 -39.67 -0.38 -1.70 16 22 C -0.09 -1.29 5.90 -104.39 -0.62 -1.91 16 23 C -0.11 -1.12 9.78 36.01 0.35 -0.77 16 24 C 0.11 1.56 6.65 -39.28 -0.26 1.30 16 25 O -0.31 -3.90 9.52 -19.48 -0.19 -4.08 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 C -0.15 -2.27 8.58 -39.02 -0.33 -2.61 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.79 5.70 -51.93 -0.30 0.50 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.72 6.25 -51.93 -0.32 0.40 16 32 H 0.05 1.12 4.13 -51.93 -0.21 0.91 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.05 0.82 6.10 -51.93 -0.32 0.51 16 37 H 0.06 1.14 6.42 -51.93 -0.33 0.80 16 38 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.41 7.88 5.01 -40.82 -0.20 7.67 16 40 H 0.14 2.42 4.63 -52.49 -0.24 2.18 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 44 H 0.07 0.73 7.52 -51.93 -0.39 0.34 16 45 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 46 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 47 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 48 H 0.14 2.05 5.88 -52.48 -0.31 1.75 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -29.91 370.14 -6.99 -36.90 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.43 Total: 11.00 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.08 Total: -2.31 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.17 Total: -51.18 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.10 Total: -15.49 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.12 Total: 15.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.91 -6.99 -36.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154237793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.009 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds