Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 C 1.50703 * 119.94552 * 179.70844 * 7 6 5 9 9 C 1.53002 * 109.46527 * 269.97627 * 8 7 6 10 10 C 1.50703 * 109.46907 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00049 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46873 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47215 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47236 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99675 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00193 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99624 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00276 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47037 * 59.99737 * 21 19 17 23 23 H 1.48492 * 109.47414 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47058 * 300.00267 * 21 19 17 25 25 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 26 26 C 1.38145 * 120.05942 * 0.02720 * 25 7 6 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 34 34 H 1.08992 * 109.47037 * 29.97091 * 8 7 6 35 35 H 1.08998 * 109.46989 * 149.98043 * 8 7 6 36 36 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 37 37 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 38 38 H 0.97002 * 119.99865 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47322 * 299.99416 * 13 12 10 40 40 H 1.08997 * 109.47403 * 60.00267 * 13 12 10 41 41 H 1.08997 * 109.47663 * 299.99867 * 14 13 12 42 42 H 1.09003 * 109.47214 * 60.00479 * 14 13 12 43 43 H 1.08997 * 109.46821 * 300.00535 * 15 14 13 44 44 H 1.08993 * 109.46928 * 59.99833 * 15 14 13 45 45 H 0.96998 * 120.00171 * 359.97438 * 16 15 14 46 46 H 0.96996 * 120.00188 * 180.02562 * 20 19 17 47 47 H 1.08009 * 119.97583 * 179.97438 * 25 7 6 48 48 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 6 9.5890 2.3509 1.4454 11 8 10.1905 2.4311 0.3953 12 7 10.2565 2.4400 2.6129 13 6 11.7089 2.6321 2.6134 14 6 12.2137 2.7006 4.0561 15 6 13.7306 2.9006 4.0568 16 7 14.2141 2.9655 5.4382 17 6 15.5486 3.1422 5.6888 18 1 16.2448 3.2333 4.8682 19 6 16.0066 3.2043 6.9977 20 7 15.1581 3.0938 7.9979 21 14 17.8272 3.4446 7.3398 22 1 18.2785 4.7263 6.7406 23 1 18.0552 3.4772 8.8068 24 1 18.5953 2.3220 6.7438 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0015 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 7.6180 2.9875 1.9584 37 1 7.8513 1.2229 1.9588 38 1 9.7753 2.3770 3.4528 39 1 12.1860 1.7971 2.1004 40 1 11.9526 3.5617 2.0991 41 1 11.7366 3.5358 4.5688 42 1 11.9700 1.7712 4.5709 43 1 14.2074 2.0651 3.5442 44 1 13.9748 3.8297 3.5419 45 1 13.5887 2.8841 6.1752 46 1 15.4781 3.1376 8.9125 47 1 5.6690 3.9828 0.0018 48 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161622685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = -63.298135 kcal Electronic energy + Delta-G solvation = -24616.872644 eV Core-core repulsion = 20864.470721 eV Total energy + Delta-G solvation = -3752.401923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59512 -39.75012 -38.19894 -36.07304 -34.34466 -33.94424 -32.23048 -31.91460 -31.27679 -29.89929 -28.85174 -25.68433 -24.60443 -24.09170 -22.58642 -22.30305 -21.24172 -21.12862 -20.10169 -18.68678 -17.36483 -16.85791 -16.56648 -16.51343 -15.96457 -15.84513 -15.47893 -14.98502 -14.67523 -14.58137 -14.02427 -13.91466 -13.85337 -13.66059 -13.28639 -13.22690 -13.04902 -12.97744 -12.83596 -12.33427 -12.17038 -12.02647 -11.69628 -11.59305 -11.39967 -11.10204 -11.03014 -10.95655 -10.90833 -10.79042 -10.61022 -10.12952 -9.87468 -9.68689 -9.36332 -9.04253 -8.87565 -8.42983 -6.93748 -5.77263 -3.06256 0.97947 1.04529 2.60845 2.75576 3.14001 3.42268 3.44758 3.48837 3.50129 4.33839 4.39424 4.44479 4.49668 4.55172 4.59282 4.71104 4.76106 4.82629 4.94418 4.96484 5.04708 5.13975 5.16806 5.25472 5.31189 5.32514 5.38366 5.50911 5.55018 5.57577 5.63223 5.72454 5.87057 5.94437 5.99406 6.00824 6.06694 6.19266 6.31984 6.32857 6.41338 6.47341 6.78809 6.83069 7.01821 7.47866 7.69623 8.19405 8.41703 9.52774 10.09869 10.44618 11.45675 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.032128 B = 0.001387 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.316587 B =20181.930147 C =20655.592860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.124 3.876 5 C -0.207 4.207 6 C -0.075 4.075 7 C -0.118 4.118 8 C -0.060 4.060 9 C -0.135 4.135 10 C 0.509 3.491 11 O -0.544 6.544 12 N -0.729 5.729 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.075 4.075 26 C -0.150 4.150 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.383 0.617 46 H 0.256 0.744 47 H 0.130 0.870 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.796 -5.934 -17.189 35.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.079 3.921 5 C -0.226 4.226 6 C -0.093 4.093 7 C -0.118 4.118 8 C -0.098 4.098 9 C -0.176 4.176 10 C 0.295 3.705 11 O -0.422 6.422 12 N -0.380 5.380 13 C -0.002 4.002 14 C -0.176 4.176 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.093 4.093 26 C -0.169 4.169 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.148 0.852 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.324 -5.716 -17.960 35.704 hybrid contribution 0.629 -0.219 1.035 1.231 sum -29.694 -5.935 -16.925 34.691 Atomic orbital electron populations 1.21781 0.92680 1.02933 1.03577 1.22785 0.95925 0.81951 1.01427 1.86067 1.19152 1.29336 1.88691 1.19011 0.82206 0.94225 0.96696 1.21232 0.94350 0.97993 1.08986 1.20881 0.94194 0.96913 0.97331 1.19833 0.95725 0.93040 1.03247 1.20260 0.89951 1.04292 0.95305 1.21678 0.92104 1.04488 0.99285 1.20695 0.89869 0.76200 0.83729 1.90708 1.70200 1.49951 1.31335 1.46129 1.09204 1.74099 1.08612 1.21354 0.78917 1.01984 0.97960 1.21946 0.98492 1.02615 0.94527 1.20523 0.89832 0.98051 0.88808 1.42327 1.06307 1.88184 1.00971 1.19210 0.84420 1.41797 0.91842 0.91143 1.24744 0.97842 1.02848 0.95522 1.69649 1.33164 1.57335 0.98202 0.86243 0.84924 0.78027 0.76857 1.21219 1.21654 1.21219 1.20916 0.91999 0.98914 0.97505 1.20437 0.95246 0.94808 1.06397 0.90317 0.91461 0.91501 0.92044 0.91991 0.85602 0.85665 0.90231 0.90146 0.88755 0.88832 0.76504 0.91422 0.91410 0.91308 0.91327 0.96073 0.96065 0.78309 0.93462 0.85188 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.28 37.16 0.38 -0.20 16 2 C 0.05 0.29 5.46 37.16 0.20 0.49 16 3 O -0.32 -2.68 10.14 -19.41 -0.20 -2.88 16 4 C 0.12 1.07 6.69 -39.21 -0.26 0.81 16 5 C -0.21 -1.59 9.04 -39.43 -0.36 -1.95 16 6 C -0.08 -0.58 9.69 -39.61 -0.38 -0.96 16 7 C -0.12 -0.95 5.13 -104.60 -0.54 -1.49 16 8 C -0.06 -0.51 4.63 -27.88 -0.13 -0.64 16 9 C -0.14 -1.09 5.68 -27.88 -0.16 -1.25 16 10 C 0.51 6.01 7.83 -10.98 -0.09 5.92 16 11 O -0.54 -8.61 15.98 5.56 0.09 -8.53 16 12 N -0.73 -8.15 5.56 -60.29 -0.33 -8.49 16 13 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 14 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16 15 C 0.16 3.13 6.26 -4.04 -0.03 3.10 16 16 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.08 -0.59 9.69 -39.61 -0.38 -0.97 16 26 C -0.15 -1.24 9.99 -39.43 -0.39 -1.64 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 31 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 32 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 35 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.46 8.47 -40.82 -0.35 3.12 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.38 10.17 7.67 -40.82 -0.31 9.85 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 48 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -34.33 401.92 -9.65 -43.99 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.09 Total: 5.95 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.55 Total: -6.89 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.05 Total: -55.18 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.11 Total: -11.41 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.33 -9.65 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161622685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.312 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds