Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.47073 * 2 1 4 4 C 1.46496 * 119.99970 * 269.99892 * 3 2 1 5 5 C 1.53000 * 109.47355 * 276.94495 * 4 3 2 6 6 C 1.34771 * 119.99923 * 90.00246 * 3 2 1 7 7 O 1.21285 * 119.99794 * 4.70775 * 6 3 2 8 8 C 1.50699 * 120.00220 * 184.71138 * 6 3 2 9 9 H 1.09005 * 109.46542 * 305.86736 * 8 6 3 10 10 C 1.52997 * 109.47000 * 65.86216 * 8 6 3 11 11 N 1.46492 * 109.47485 * 185.86695 * 8 6 3 12 12 C 1.39937 * 120.00450 * 154.99507 * 11 8 6 13 13 C 1.38863 * 120.02465 * 179.97438 * 12 11 8 14 14 C 1.38104 * 119.98257 * 179.97438 * 13 12 11 15 15 C 1.38700 * 120.01833 * 0.03246 * 14 13 12 16 16 O 1.36001 * 119.97828 * 179.97438 * 15 14 13 17 17 C 1.42903 * 117.00221 * 179.97438 * 16 15 14 18 18 C 1.50690 * 109.47643 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00481 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99361 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00147 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47530 * 90.00061 * 22 20 18 24 24 H 1.48504 * 109.47070 * 210.00129 * 22 20 18 25 25 H 1.48506 * 109.47424 * 329.99940 * 22 20 18 26 26 C 1.38700 * 120.04249 * 0.22396 * 15 14 13 27 27 C 1.38111 * 120.01277 * 359.49249 * 26 15 14 28 28 H 1.09003 * 109.46880 * 59.99731 * 1 2 3 29 29 H 1.08995 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46915 * 300.00094 * 1 2 3 31 31 H 1.08998 * 109.47056 * 240.00574 * 2 1 3 32 32 H 1.08994 * 109.47476 * 120.00172 * 2 1 3 33 33 H 1.09004 * 109.47130 * 36.94778 * 4 3 2 34 34 H 1.09001 * 109.47292 * 156.94342 * 4 3 2 35 35 H 1.09001 * 109.46571 * 60.00520 * 5 4 3 36 36 H 1.09000 * 109.46897 * 179.97438 * 5 4 3 37 37 H 1.08987 * 109.47074 * 299.99975 * 5 4 3 38 38 H 1.09004 * 109.46968 * 68.73273 * 10 8 6 39 39 H 1.09007 * 109.47244 * 188.72962 * 10 8 6 40 40 H 1.08990 * 109.47608 * 308.73005 * 10 8 6 41 41 H 0.97000 * 119.99842 * 334.99905 * 11 8 6 42 42 H 1.08005 * 120.00434 * 0.02562 * 13 12 11 43 43 H 1.07999 * 119.98899 * 180.02562 * 14 13 12 44 44 H 1.09002 * 109.47195 * 300.00010 * 17 16 15 45 45 H 1.09004 * 109.47203 * 59.99301 * 17 16 15 46 46 H 0.97003 * 119.99812 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99183 * 179.72904 * 26 15 14 48 48 H 1.08006 * 120.00931 * 180.25641 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6472 1.6926 -1.7976 6 6 2.2430 2.0166 1.1672 7 8 2.1232 1.4189 2.2157 8 6 2.6430 3.4695 1.1695 9 1 3.5181 3.6064 0.5341 10 6 1.4871 4.3175 0.6350 11 7 2.9625 3.8860 2.5371 12 6 3.8284 4.9632 2.7563 13 6 4.1312 5.3586 4.0526 14 6 4.9863 6.4215 4.2680 15 6 5.5421 7.0943 3.1900 16 8 6.3837 8.1412 3.4030 17 6 6.9202 8.7880 2.2471 18 6 7.8232 9.9156 2.6761 19 1 7.9729 10.1179 3.7264 20 6 8.4593 10.6884 1.7277 21 7 8.2782 10.4411 0.4489 22 14 9.5792 12.0856 2.2595 23 1 10.9657 11.5770 2.4150 24 1 9.5572 13.1565 1.2309 25 1 9.1050 12.6343 3.5554 26 6 5.2362 6.7035 1.8948 27 6 4.3858 5.6371 1.6777 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5036 1.7785 -1.9940 34 1 2.2166 3.1494 -1.1106 35 1 3.6930 0.6151 -1.9558 36 1 3.8286 2.2061 -2.7418 37 1 4.4060 1.9861 -1.0724 38 1 0.6651 4.3037 1.3507 39 1 1.8257 5.3435 0.4903 40 1 1.1469 3.9096 -0.3168 41 1 2.5739 3.4150 3.2908 42 1 3.6987 4.8345 4.8921 43 1 5.2222 6.7289 5.2761 44 1 7.4908 8.0684 1.6600 45 1 6.1053 9.1856 1.6421 46 1 8.7253 10.9850 -0.2184 47 1 5.6660 7.2308 1.0560 48 1 4.1509 5.3302 0.6692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164642098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = -64.613887 kcal Electronic energy + Delta-G solvation = -26689.137127 eV Core-core repulsion = 22936.678149 eV Total energy + Delta-G solvation = -3752.458978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56345 -40.73178 -38.80944 -37.36633 -36.29813 -34.97716 -33.28249 -32.09072 -31.77773 -30.37858 -29.82683 -28.24922 -25.75883 -25.33996 -24.58602 -23.83883 -22.87755 -22.01546 -20.10062 -19.28640 -18.62183 -18.43529 -17.81101 -17.19920 -16.73454 -16.63473 -16.34690 -16.26321 -15.85986 -15.34374 -15.00080 -14.84133 -14.74147 -14.46411 -14.26566 -14.09216 -13.91304 -13.79569 -13.52998 -13.42630 -13.32765 -13.17488 -12.96014 -12.88655 -12.77149 -12.71634 -12.52658 -12.24964 -12.09505 -11.93619 -11.81199 -11.71047 -11.25198 -10.87410 -10.75163 -10.33561 -9.89547 -9.78085 -8.36828 -7.99988 -6.50295 0.44223 0.75165 1.40187 1.43077 1.44613 1.55099 1.78638 2.30793 2.51639 2.91951 2.94901 2.98310 3.31944 3.84905 3.97867 4.02805 4.05808 4.09596 4.14550 4.20472 4.42114 4.42673 4.46007 4.51173 4.52404 4.58580 4.71203 4.74330 4.79039 4.80508 4.89262 4.97795 5.02199 5.03998 5.07622 5.21511 5.25120 5.27233 5.34211 5.36172 5.49233 5.55106 5.63601 5.76854 5.90586 6.20090 6.39917 6.56583 6.79702 6.94190 7.02007 7.22526 8.75542 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.002292 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.487764 B =12210.992985 C =13070.683826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.082 3.918 5 C -0.172 4.172 6 C 0.512 3.488 7 O -0.574 6.574 8 C 0.134 3.866 9 H 0.108 0.892 10 C -0.168 4.168 11 N -0.733 5.733 12 C 0.178 3.822 13 C -0.148 4.148 14 C -0.119 4.119 15 C 0.052 3.948 16 O -0.344 6.344 17 C 0.215 3.785 18 C -0.557 4.557 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.987 3.013 23 H -0.267 1.267 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.174 4.174 27 C -0.154 4.154 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.406 0.594 42 H 0.150 0.850 43 H 0.134 0.866 44 H -0.002 1.002 45 H -0.001 1.001 46 H 0.273 0.727 47 H 0.112 0.888 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 -20.754 -7.096 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.336 5.336 4 C -0.039 4.039 5 C -0.231 4.231 6 C 0.300 3.700 7 O -0.454 6.454 8 C 0.024 3.976 9 H 0.125 0.875 10 C -0.226 4.226 11 N -0.367 5.367 12 C 0.076 3.924 13 C -0.170 4.170 14 C -0.138 4.138 15 C 0.006 3.994 16 O -0.259 6.259 17 C 0.141 3.859 18 C -0.594 4.594 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.809 3.191 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.194 4.194 27 C -0.176 4.176 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.243 0.757 42 H 0.167 0.833 43 H 0.152 0.848 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.082 0.918 47 H 0.130 0.870 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.927 -20.976 -6.768 27.791 hybrid contribution 0.633 0.528 0.164 0.840 sum -16.295 -20.448 -6.603 26.967 Atomic orbital electron populations 1.22068 0.94904 1.03051 1.01819 1.21547 0.95022 0.81630 1.03451 1.48070 1.64754 1.14712 1.06033 1.22217 0.98494 0.98859 0.84371 1.22202 0.96265 1.02645 1.01955 1.20896 0.76187 0.89173 0.83764 1.90661 1.53545 1.68427 1.32759 1.20769 1.00308 0.90422 0.86069 0.87468 1.22437 0.97113 1.00709 1.02368 1.44236 1.51720 1.34235 1.06508 1.17608 0.92110 0.89366 0.93267 1.20546 1.01727 0.98880 0.95880 1.20354 0.99162 0.96756 0.97559 1.19461 0.94494 0.90779 0.94715 1.86021 1.59225 1.43555 1.37115 1.20076 0.92070 0.90970 0.82777 1.21341 1.28527 1.15153 0.94399 0.91763 1.25957 0.97988 1.00459 0.94488 1.70052 1.43944 1.41239 1.01103 0.85125 0.78259 0.77270 0.78413 1.19209 1.19623 1.18896 1.21159 1.02263 1.00256 0.95685 1.20524 1.01003 0.97370 0.98731 0.91067 0.90240 0.94586 0.87929 0.92016 0.87530 0.88072 0.92008 0.89559 0.93988 0.92154 0.90832 0.88270 0.75722 0.83266 0.84785 0.98435 0.98293 0.91759 0.87011 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.24 71.98 0.74 -0.90 16 2 C 0.11 1.27 6.18 86.38 0.53 1.81 16 3 N -0.60 -8.32 2.48 -821.81 -2.03 -10.36 16 4 C 0.08 0.64 5.43 86.38 0.47 1.11 16 5 C -0.17 -1.50 10.22 71.98 0.74 -0.77 16 6 C 0.51 10.47 7.05 87.66 0.62 11.09 16 7 O -0.57 -16.10 15.37 -3.05 -0.05 -16.14 16 8 C 0.13 2.53 1.84 44.25 0.08 2.61 16 9 H 0.11 1.90 6.05 -2.38 -0.01 1.89 16 10 C -0.17 -2.49 8.92 71.98 0.64 -1.84 16 11 N -0.73 -17.44 5.16 -322.38 -1.66 -19.10 16 12 C 0.18 5.10 6.64 38.15 0.25 5.35 16 13 C -0.15 -4.40 9.89 22.39 0.22 -4.18 16 14 C -0.12 -4.30 9.98 22.35 0.22 -4.08 16 15 C 0.05 2.29 6.69 22.49 0.15 2.44 16 16 O -0.34 -18.21 10.12 -93.57 -0.95 -19.16 16 17 C 0.21 12.35 4.49 71.23 0.32 12.67 16 18 C -0.56 -33.50 9.43 25.60 0.24 -33.26 16 19 H 0.06 3.82 7.81 -2.91 -0.02 3.80 16 20 C 0.01 0.60 5.46 84.66 0.46 1.06 16 21 N -0.92 -54.88 13.29 21.45 0.28 -54.59 16 22 Si 0.99 44.14 29.54 68.60 2.03 46.17 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.17 -6.97 9.03 22.35 0.20 -6.77 16 27 C -0.15 -4.79 8.93 22.39 0.20 -4.59 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.10 0.72 7.98 -2.39 -0.02 0.70 16 32 H 0.06 1.05 7.36 -2.39 -0.02 1.03 16 33 H 0.11 0.34 8.12 -2.38 -0.02 0.32 16 34 H 0.10 0.70 4.11 -2.39 -0.01 0.69 16 35 H 0.06 0.51 8.05 -2.39 -0.02 0.49 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 40 H 0.10 0.92 5.43 -2.39 -0.01 0.90 16 41 H 0.41 9.80 7.75 -92.71 -0.72 9.08 16 42 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 44 H 0.00 -0.13 7.67 -2.39 -0.02 -0.14 16 45 H 0.00 -0.04 7.65 -2.39 -0.02 -0.06 16 46 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.11 4.85 6.29 -2.91 -0.02 4.83 16 48 H 0.14 3.52 5.99 -2.91 -0.02 3.51 16 Total: -1.00 -73.80 388.90 3.95 -69.85 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.24 Total: 21.60 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.09 Total: -18.26 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -3.41 Total: -84.05 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.99 Total: -35.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.80 3.95 -69.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164642098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.240 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds