Wall clock time and date at job start Tue Mar 31 2020 12:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46820 * 2 1 4 4 C 1.46499 * 119.99980 * 269.99915 * 3 2 1 5 5 C 1.53005 * 109.47214 * 270.00136 * 4 3 2 6 6 C 1.53003 * 109.47005 * 59.99848 * 5 4 3 7 7 C 1.52993 * 109.47071 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.47069 * 300.00053 * 5 4 3 9 9 C 1.34779 * 120.00006 * 90.00021 * 3 2 1 10 10 O 1.21586 * 119.99865 * 179.97438 * 9 3 2 11 11 N 1.34775 * 120.00191 * 359.97438 * 9 3 2 12 12 C 1.40027 * 120.00337 * 175.43260 * 11 9 3 13 13 C 1.38908 * 119.99953 * 215.13791 * 12 11 9 14 14 C 1.38013 * 119.99658 * 180.02562 * 13 12 11 15 15 C 1.38898 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.35784 * 120.00157 * 179.97438 * 15 14 13 17 17 C 1.34814 * 116.99736 * 5.37329 * 16 15 14 18 18 H 1.08002 * 120.00052 * 354.96011 * 17 16 15 19 19 C 1.38627 * 119.99823 * 174.96222 * 17 16 15 20 20 N 1.31578 * 119.99767 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00288 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46942 * 89.99940 * 21 19 17 23 23 H 1.48497 * 109.47028 * 209.99791 * 21 19 17 24 24 H 1.48504 * 109.46728 * 330.00019 * 21 19 17 25 25 C 1.38903 * 120.00208 * 0.23425 * 15 14 13 26 26 C 1.38013 * 120.00171 * 359.48822 * 25 15 14 27 27 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47702 * 299.99716 * 1 2 3 29 29 H 1.09003 * 109.47472 * 60.00232 * 1 2 3 30 30 H 1.08996 * 109.47066 * 239.99893 * 2 1 3 31 31 H 1.09004 * 109.46785 * 120.00068 * 2 1 3 32 32 H 1.08999 * 109.47530 * 30.00033 * 4 3 2 33 33 H 1.08998 * 109.47361 * 150.00338 * 4 3 2 34 34 H 1.09003 * 109.46633 * 60.00199 * 6 5 4 35 35 H 1.09000 * 109.46759 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47095 * 300.00571 * 6 5 4 37 37 H 1.08998 * 109.47441 * 60.00239 * 7 5 4 38 38 H 1.09010 * 109.47179 * 179.97438 * 7 5 4 39 39 H 1.08999 * 109.47592 * 299.99847 * 7 5 4 40 40 H 1.09001 * 109.47120 * 60.00009 * 8 5 4 41 41 H 1.08998 * 109.47320 * 179.97438 * 8 5 4 42 42 H 1.08999 * 109.47569 * 299.99916 * 8 5 4 43 43 H 0.97008 * 119.99651 * 355.43108 * 11 9 3 44 44 H 1.07998 * 120.00463 * 359.97438 * 13 12 11 45 45 H 1.08000 * 119.99704 * 180.02562 * 14 13 12 46 46 H 0.96999 * 119.99814 * 180.02562 * 20 19 17 47 47 H 1.08002 * 120.00145 * 179.72580 * 25 15 14 48 48 H 1.07998 * 120.00140 * 180.23105 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8314 -1.7104 6 6 3.9419 0.3306 -1.8933 7 6 3.9626 2.5532 -3.0351 8 6 4.6630 2.3706 -0.6441 9 6 2.2429 2.0166 1.1672 10 8 2.6485 3.1628 1.1672 11 7 2.0178 1.3814 2.3344 12 6 2.3410 2.0061 3.5452 13 6 2.8152 1.2519 4.6110 14 6 3.1333 1.8676 5.8045 15 6 2.9788 3.2413 5.9401 16 8 3.2912 3.8470 7.1145 17 6 3.8501 3.0777 8.0702 18 1 3.9554 2.0142 7.9143 19 6 4.2895 3.6517 9.2531 20 7 4.8344 2.9008 10.1860 21 14 4.1080 5.4913 9.5225 22 1 2.7979 5.7707 10.1636 23 1 5.2026 5.9730 10.4028 24 1 4.1790 6.1923 8.2153 25 6 2.4995 3.9948 4.8761 26 6 2.1868 3.3800 3.6807 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0954 3.1410 -1.1384 34 1 3.2610 -0.0535 -2.6530 35 1 4.9712 0.1594 -2.2084 36 1 3.7601 -0.1833 -0.9493 37 1 3.7957 3.6224 -2.9043 38 1 4.9922 2.3823 -3.3495 39 1 3.2818 2.1695 -3.7950 40 1 4.4814 1.8568 0.2998 41 1 5.6925 2.1990 -0.9586 42 1 4.4961 3.4398 -0.5137 43 1 1.6318 0.4914 2.3357 44 1 2.9342 0.1837 4.5060 45 1 3.5024 1.2813 6.6330 46 1 5.1415 3.3024 11.0138 47 1 2.3752 5.0623 4.9831 48 1 1.8177 3.9663 2.8523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343646475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:43 Heat of formation + Delta-G solvation = -45.837766 kcal Electronic energy + Delta-G solvation = -27509.574596 eV Core-core repulsion = 23757.929812 eV Total energy + Delta-G solvation = -3751.644784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92915 -40.73938 -39.07005 -37.80186 -36.37322 -35.06965 -34.29614 -31.89467 -31.42224 -29.83509 -28.18154 -28.16317 -27.49100 -26.63848 -24.31872 -23.90348 -22.85484 -21.15296 -20.04009 -19.66980 -19.20267 -18.97554 -18.06525 -17.01449 -16.61323 -16.48986 -15.88445 -15.67864 -15.55533 -15.38691 -15.13305 -14.93416 -14.82644 -14.45815 -14.30331 -14.15777 -14.00213 -13.90103 -13.39393 -13.28917 -13.11218 -13.05724 -12.79660 -12.71828 -12.51260 -12.45628 -12.33351 -12.13583 -11.99694 -11.89510 -11.60021 -11.53973 -11.41987 -11.17160 -10.92040 -10.58585 -9.85364 -9.60789 -8.60770 -8.48322 -6.19072 0.50176 0.56168 1.32246 1.35896 1.52667 1.61825 2.14236 2.29502 2.78671 2.90747 3.05049 3.19634 3.87024 3.88081 3.98342 4.03192 4.08973 4.13427 4.34500 4.41565 4.48471 4.54758 4.56310 4.62722 4.73635 4.76678 4.79587 4.87025 4.93654 4.94742 4.96739 5.07729 5.08495 5.10537 5.16879 5.21226 5.33986 5.37173 5.38410 5.44629 5.50242 5.52660 5.58615 5.68130 5.78603 5.91684 5.98722 6.23729 6.86587 6.93691 7.57312 7.61939 8.63126 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002692 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.173863 B =10398.022047 C =10827.604054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 N -0.614 5.614 4 C 0.142 3.858 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.135 4.135 8 C -0.125 4.125 9 C 0.698 3.302 10 O -0.608 6.608 11 N -0.669 5.669 12 C 0.094 3.906 13 C -0.088 4.088 14 C -0.212 4.212 15 C 0.112 3.888 16 O -0.246 6.246 17 C -0.396 4.396 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.176 4.176 26 C -0.075 4.075 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.416 0.584 44 H 0.151 0.849 45 H 0.121 0.879 46 H 0.284 0.716 47 H 0.125 0.875 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -8.868 -28.453 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.350 5.350 4 C 0.019 3.981 5 C -0.084 4.084 6 C -0.195 4.195 7 C -0.193 4.193 8 C -0.182 4.182 9 C 0.401 3.599 10 O -0.488 6.488 11 N -0.319 5.319 12 C -0.001 4.001 13 C -0.109 4.109 14 C -0.231 4.231 15 C 0.063 3.937 16 O -0.153 6.153 17 C -0.473 4.473 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.191 1.191 25 C -0.196 4.196 26 C -0.095 4.095 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.255 0.745 44 H 0.168 0.832 45 H 0.139 0.861 46 H 0.094 0.906 47 H 0.143 0.857 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.532 -7.874 -28.259 30.287 hybrid contribution 0.184 0.226 0.984 1.027 sum -7.348 -7.648 -27.275 29.264 Atomic orbital electron populations 1.22222 0.95012 1.03461 1.02135 1.21949 0.95018 0.81111 1.04857 1.47166 1.68935 1.15109 1.03784 1.21514 0.95755 0.97349 0.83446 1.20973 0.94893 0.97052 0.95503 1.21938 1.02053 0.93627 1.01903 1.21771 1.02313 0.99781 0.95423 1.21736 0.98568 1.00055 0.97891 1.16047 0.78392 0.84423 0.81073 1.90902 1.53471 1.18130 1.86286 1.42370 1.66262 1.20960 1.02324 1.17191 1.04819 0.91945 0.86144 1.20755 0.98221 1.00513 0.91389 1.21110 1.08359 0.94042 0.99631 1.19564 0.95753 0.92376 0.86050 1.83531 1.72308 1.38683 1.20828 1.20737 1.38744 0.92656 0.95142 0.89628 1.25217 0.95093 1.04317 0.94104 1.69730 1.40746 1.38062 1.07854 0.85272 0.78650 0.78516 0.78649 1.18978 1.19286 1.19074 1.20316 1.07602 0.99962 0.91686 1.20906 0.98757 0.94163 0.95680 0.89373 0.93899 0.91941 0.87221 0.90252 0.87588 0.92054 0.90521 0.92938 0.92756 0.93358 0.92310 0.90598 0.95162 0.93352 0.94454 0.74471 0.83177 0.86079 0.90633 0.85686 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 71.98 0.74 -0.69 16 2 C 0.09 0.89 4.76 86.38 0.41 1.30 16 3 N -0.61 -10.63 2.00 -839.84 -1.68 -12.30 16 4 C 0.14 2.22 4.60 86.38 0.40 2.62 16 5 C -0.08 -1.27 0.84 -52.18 -0.04 -1.31 16 6 C -0.14 -1.56 7.23 71.98 0.52 -1.04 16 7 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 8 C -0.12 -2.93 7.14 71.98 0.51 -2.41 16 9 C 0.70 18.41 6.53 179.05 1.17 19.58 16 10 O -0.61 -21.14 11.54 -3.99 -0.05 -21.18 16 11 N -0.67 -16.71 5.18 -317.05 -1.64 -18.35 16 12 C 0.09 3.12 6.30 38.15 0.24 3.36 16 13 C -0.09 -3.03 9.96 22.38 0.22 -2.81 16 14 C -0.21 -9.26 9.16 22.37 0.20 -9.06 16 15 C 0.11 5.42 6.65 22.59 0.15 5.57 16 16 O -0.25 -13.69 8.58 -22.95 -0.20 -13.89 16 17 C -0.40 -23.55 9.94 67.91 0.68 -22.87 16 18 H 0.09 5.23 5.43 -2.91 -0.02 5.22 16 19 C 0.01 0.64 5.49 84.82 0.47 1.11 16 20 N -0.92 -55.47 13.96 21.61 0.30 -55.17 16 21 Si 0.97 46.47 28.62 68.60 1.96 48.43 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 C -0.18 -7.51 9.98 22.38 0.22 -7.29 16 26 C -0.07 -2.83 8.69 22.38 0.19 -2.64 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.62 6.05 -2.39 -0.01 0.60 16 31 H 0.08 0.69 6.44 -2.38 -0.02 0.68 16 32 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 33 H 0.06 1.29 7.42 -2.39 -0.02 1.27 16 34 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.67 5.99 -2.39 -0.01 0.65 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.03 0.84 6.15 -2.39 -0.01 0.82 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 1.04 7.73 -2.39 -0.02 1.02 16 43 H 0.42 7.36 6.62 -92.70 -0.61 6.75 16 44 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.12 5.66 5.63 -2.91 -0.02 5.65 16 46 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 48 H 0.14 5.13 6.22 -2.91 -0.02 5.11 16 Total: -1.00 -72.81 376.57 5.74 -67.07 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.35 Total: 23.02 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 6.69 Total: -17.62 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.02 Total: -85.82 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.24 Total: -35.07 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.96 Total: 48.43 kcal Total: -72.81 5.74 -67.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343646475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.230 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds