Wall clock time and date at job start Tue Mar 31 2020 12:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 C 1.50692 * 109.47345 * 119.99887 * 2 1 3 5 5 O 1.21284 * 120.00110 * 0.02562 * 4 2 1 6 6 N 1.34778 * 120.00276 * 179.97438 * 4 2 1 7 7 C 1.46504 * 119.99893 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46962 * 180.02562 * 7 6 4 9 9 H 1.09008 * 109.47126 * 294.99848 * 8 7 6 10 10 C 1.52998 * 109.47398 * 175.00284 * 8 7 6 11 11 N 1.46902 * 109.47176 * 55.00031 * 8 7 6 12 12 C 1.46905 * 110.99757 * 205.00151 * 11 8 7 13 13 C 1.50701 * 109.46928 * 180.02562 * 12 11 8 14 14 C 1.38295 * 119.93297 * 89.99748 * 13 12 11 15 15 C 1.38099 * 120.06865 * 180.25412 * 14 13 12 16 16 C 1.38882 * 119.93206 * 359.47410 * 15 14 13 17 17 O 1.35746 * 120.07145 * 180.25590 * 16 15 14 18 18 C 1.34834 * 117.00340 * 174.73672 * 17 16 15 19 19 H 1.08003 * 119.99155 * 5.05417 * 18 17 16 20 20 C 1.38652 * 120.00189 * 185.05311 * 18 17 16 21 21 N 1.31551 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47080 * 90.00176 * 22 20 18 24 24 H 1.48495 * 109.47054 * 209.99795 * 22 20 18 25 25 H 1.48500 * 109.47285 * 330.00378 * 22 20 18 26 26 C 1.38876 * 119.85943 * 0.52538 * 16 15 14 27 27 C 1.38100 * 119.93177 * 359.72571 * 26 16 15 28 28 H 1.09000 * 109.47057 * 300.00316 * 1 2 3 29 29 H 1.09008 * 109.47120 * 59.99276 * 1 2 3 30 30 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47235 * 240.00444 * 2 1 3 32 32 H 1.08996 * 109.47318 * 60.00684 * 3 2 1 33 33 H 1.09010 * 109.46697 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47233 * 299.99795 * 3 2 1 35 35 H 0.96995 * 119.99786 * 0.02562 * 6 4 2 36 36 H 1.08994 * 109.47284 * 60.00178 * 7 6 4 37 37 H 1.09004 * 109.47387 * 300.00182 * 7 6 4 38 38 H 1.09002 * 109.47625 * 179.97438 * 10 8 7 39 39 H 1.09008 * 109.46625 * 299.99870 * 10 8 7 40 40 H 1.08999 * 109.47231 * 59.99149 * 10 8 7 41 41 H 1.00895 * 111.00197 * 328.95097 * 11 8 7 42 42 H 1.08996 * 109.47200 * 60.00403 * 12 11 8 43 43 H 1.09003 * 109.46980 * 299.99557 * 12 11 8 44 44 H 1.08000 * 119.96836 * 359.97438 * 14 13 12 45 45 H 1.08002 * 120.03655 * 179.72759 * 15 14 13 46 46 H 0.97006 * 120.00187 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.03796 * 179.70626 * 26 16 15 48 48 H 1.07997 * 119.96864 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 1.2442 -1.1717 2.0286 6 7 3.3574 -0.8339 1.4434 7 6 3.8457 -1.5250 2.6394 8 6 5.3757 -1.5249 2.6394 9 1 5.7391 -2.1140 1.7973 10 6 5.8857 -2.1351 3.9465 11 7 5.8653 -0.1451 2.5193 12 6 7.2127 -0.1136 1.9348 13 6 7.6806 1.3149 1.8281 14 6 8.3724 1.8945 2.8760 15 6 8.7980 3.2050 2.7833 16 6 8.5402 3.9376 1.6319 17 8 8.9618 5.2243 1.5357 18 6 8.7755 5.8427 0.3521 19 1 8.2366 5.3429 -0.4393 20 6 9.2757 7.1201 0.1509 21 7 9.9325 7.7286 1.1147 22 14 9.0182 7.9765 -1.4891 23 1 7.7498 8.7479 -1.4510 24 1 10.1516 8.9002 -1.7486 25 1 8.9483 6.9623 -2.5716 26 6 7.8453 3.3527 0.5813 27 6 7.4178 2.0434 0.6822 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.9877 -0.4653 0.8049 36 1 3.4821 -2.5525 2.6391 37 1 3.4827 -1.0114 3.5296 38 1 6.9758 -2.1355 3.9464 39 1 5.5223 -1.5460 4.7886 40 1 5.5224 -3.1589 4.0356 41 1 5.2250 0.4203 1.9824 42 1 7.1888 -0.5636 0.9423 43 1 7.8980 -0.6735 2.5713 44 1 8.5761 1.3232 3.7695 45 1 9.3343 3.6586 3.6037 46 1 10.2822 8.6225 0.9741 47 1 7.6391 3.9211 -0.3135 48 1 6.8770 1.5880 -0.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001398881536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:34 Heat of formation + Delta-G solvation = -75.970042 kcal Electronic energy + Delta-G solvation = -26460.920367 eV Core-core repulsion = 22707.968949 eV Total energy + Delta-G solvation = -3752.951418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07325 -40.74305 -38.97959 -37.85994 -35.48492 -35.04973 -34.25702 -32.62248 -31.73375 -29.93719 -28.16310 -27.55141 -27.35642 -25.35487 -23.91549 -23.57677 -21.97012 -21.63346 -20.83306 -19.82128 -18.86205 -18.28929 -17.28393 -17.05540 -16.54809 -16.39690 -16.19527 -16.12381 -15.62436 -15.46322 -15.20327 -15.01381 -14.78838 -14.38539 -14.14491 -13.87211 -13.74213 -13.65773 -13.41068 -13.31788 -13.19035 -13.00366 -12.95727 -12.81954 -12.69292 -12.32769 -12.30240 -12.12563 -12.07806 -12.00024 -11.91635 -11.74579 -11.14162 -10.80323 -10.77991 -10.15890 -9.73896 -9.35028 -8.87667 -8.45647 -6.13793 0.64548 0.71043 1.36029 1.45337 1.53630 1.60209 2.16305 2.18869 2.79937 3.11117 3.41255 3.56287 3.67480 3.74945 3.98204 4.03341 4.04956 4.09175 4.20699 4.27310 4.39296 4.46009 4.51396 4.64497 4.65480 4.74490 4.75701 4.82448 4.84800 4.87848 4.92992 4.99875 5.06768 5.08462 5.13865 5.17730 5.27232 5.31014 5.34539 5.36760 5.48145 5.61483 5.74765 5.84230 6.05030 6.10532 6.28776 6.43521 6.45134 6.99317 7.19191 7.81589 8.77911 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.002816 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.028350 B = 9939.704224 C =11898.698337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.585 6.585 6 N -0.722 5.722 7 C 0.120 3.880 8 C 0.081 3.919 9 H 0.066 0.934 10 C -0.138 4.138 11 N -0.691 5.691 12 C 0.122 3.878 13 C -0.158 4.158 14 C -0.048 4.048 15 C -0.210 4.210 16 C 0.113 3.887 17 O -0.236 6.236 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.250 1.250 26 C -0.242 4.242 27 C -0.060 4.060 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.340 0.660 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.141 0.859 45 H 0.106 0.894 46 H 0.272 0.728 47 H 0.119 0.881 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -20.385 -4.670 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.300 3.700 5 O -0.465 6.465 6 N -0.375 5.375 7 C -0.004 4.004 8 C -0.029 4.029 9 H 0.084 0.916 10 C -0.196 4.196 11 N -0.325 5.325 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.067 4.067 15 C -0.229 4.229 16 C 0.063 3.937 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.222 4.222 21 N -0.562 5.562 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.174 1.174 26 C -0.261 4.261 27 C -0.078 4.078 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.160 0.840 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.158 0.842 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.137 0.863 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.610 -20.380 -3.242 24.184 hybrid contribution 0.278 1.000 -1.290 1.656 sum -12.332 -19.380 -4.532 23.414 Atomic orbital electron populations 1.21617 0.92852 1.02179 1.02379 1.21365 0.98141 0.97700 0.95901 1.21823 1.01864 0.93367 1.03237 1.21280 0.82013 0.78656 0.88001 1.90679 1.56427 1.50544 1.48820 1.46026 1.07168 1.58657 1.25694 1.21545 0.93673 0.97576 0.87654 1.21756 0.91798 0.89640 0.99660 0.91579 1.21737 1.01639 1.00296 0.95918 1.60545 1.03663 1.10765 1.57572 1.20699 0.90223 0.91229 0.98451 1.19631 1.04293 0.97379 0.94630 1.20837 0.95126 0.92185 0.98522 1.20463 1.08991 0.96073 0.97416 1.19966 0.93483 0.84847 0.95441 1.83946 1.73078 1.21157 1.36052 1.21835 1.37202 0.99449 0.90285 0.87894 1.26603 0.95407 0.96524 1.03663 1.70191 1.36393 1.14613 1.34985 0.84592 0.78471 0.78089 0.75103 1.18832 1.19831 1.17360 1.21236 1.06830 0.98020 1.00037 1.20981 0.97049 0.92001 0.97765 0.93731 0.89839 0.92926 0.85976 0.93466 0.91245 0.89703 0.75409 0.90700 0.92433 0.91814 0.92808 0.91000 0.83977 0.92863 0.89677 0.84158 0.87537 0.91921 0.86340 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.48 71.98 0.61 -1.39 16 2 C -0.11 -1.50 3.26 -11.54 -0.04 -1.54 16 3 C -0.15 -1.86 9.09 71.98 0.65 -1.20 16 4 C 0.51 10.14 7.15 87.65 0.63 10.76 16 5 O -0.58 -16.73 15.98 -3.04 -0.05 -16.78 16 6 N -0.72 -11.00 4.88 -463.06 -2.26 -13.26 16 7 C 0.12 1.93 5.31 86.38 0.46 2.39 16 8 C 0.08 1.10 2.81 44.91 0.13 1.23 16 9 H 0.07 0.73 7.80 -2.38 -0.02 0.71 16 10 C -0.14 -1.83 9.41 71.98 0.68 -1.16 16 11 N -0.69 -12.20 6.29 -495.56 -3.12 -15.31 16 12 C 0.12 2.26 5.61 85.56 0.48 2.74 16 13 C -0.16 -4.36 5.40 -19.83 -0.11 -4.47 16 14 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 15 C -0.21 -8.86 9.99 22.39 0.22 -8.64 16 16 C 0.11 5.51 6.65 22.58 0.15 5.66 16 17 O -0.24 -14.11 9.76 -22.74 -0.22 -14.33 16 18 C -0.41 -23.65 9.49 67.92 0.64 -23.00 16 19 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 21 N -0.92 -56.71 13.67 21.61 0.30 -56.41 16 22 Si 1.02 42.14 29.55 68.60 2.03 44.16 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 26 C -0.24 -9.90 9.17 22.39 0.21 -9.69 16 27 C -0.06 -1.79 9.69 22.25 0.22 -1.58 16 28 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.78 7.57 -2.38 -0.02 0.76 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.41 4.40 6.79 -92.71 -0.63 3.77 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 0.84 7.45 -2.39 -0.02 0.82 16 39 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.34 6.03 6.70 -89.70 -0.60 5.43 16 42 H 0.05 0.79 8.00 -2.39 -0.02 0.77 16 43 H 0.08 1.47 7.38 -2.39 -0.02 1.46 16 44 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 45 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 47 H 0.12 4.93 5.64 -2.91 -0.02 4.91 16 48 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -75.89 394.50 2.02 -73.88 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.27 Total: 30.21 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 5.61 Total: -32.16 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -5.08 Total: -84.98 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.27 Total: -31.11 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -75.89 2.02 -73.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001398881536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.095 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds