Wall clock time and date at job start Tue Mar 31 2020 12:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46498 * 109.47425 * 2 1 4 4 C 1.46507 * 119.99877 * 269.99862 * 3 2 1 5 5 C 1.52998 * 109.47401 * 270.00076 * 4 3 2 6 6 C 1.39672 * 120.00144 * 89.99878 * 3 2 1 7 7 C 1.38917 * 120.07239 * 179.97438 * 6 3 2 8 8 C 1.38102 * 119.92010 * 180.02562 * 7 6 3 9 9 C 1.38291 * 120.07930 * 0.02562 * 8 7 6 10 10 C 1.50691 * 119.92500 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47459 * 83.37492 * 10 9 8 12 12 C 1.36940 * 119.99674 * 267.17447 * 11 10 9 13 13 H 1.08003 * 120.00050 * 140.05473 * 12 11 10 14 14 C 1.38805 * 119.99966 * 320.04779 * 12 11 10 15 15 N 1.31625 * 120.00389 * 340.12275 * 14 12 11 16 16 Si 1.86809 * 120.00154 * 160.11971 * 14 12 11 17 17 H 1.48498 * 109.46684 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47101 * 120.00001 * 16 14 12 19 19 H 1.48496 * 109.47104 * 240.00398 * 16 14 12 20 20 C 1.46500 * 120.00560 * 87.44455 * 11 10 9 21 21 C 1.53000 * 109.47167 * 269.72946 * 20 11 10 22 22 C 1.50703 * 109.47159 * 179.97438 * 21 20 11 23 23 O 1.20829 * 119.99626 * 359.97438 * 22 21 20 24 24 O 1.34227 * 119.99947 * 180.02562 * 22 21 20 25 25 C 1.38289 * 120.14549 * 0.27262 * 9 8 7 26 26 C 1.38100 * 120.07558 * 359.45103 * 25 9 8 27 27 H 1.09004 * 109.47319 * 300.00041 * 1 2 3 28 28 H 1.09007 * 109.47554 * 60.00032 * 1 2 3 29 29 H 1.08996 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47319 * 239.99959 * 2 1 3 31 31 H 1.09003 * 109.47310 * 120.00384 * 2 1 3 32 32 H 1.09000 * 109.47107 * 30.00021 * 4 3 2 33 33 H 1.09002 * 109.46703 * 149.99702 * 4 3 2 34 34 H 1.08996 * 109.47169 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46945 * 300.00044 * 5 4 3 36 36 H 1.09001 * 109.47044 * 59.99840 * 5 4 3 37 37 H 1.07995 * 120.03937 * 0.04865 * 7 6 3 38 38 H 1.08001 * 119.96283 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.47506 * 323.37085 * 10 9 8 40 40 H 1.09005 * 109.47041 * 203.37364 * 10 9 8 41 41 H 0.96999 * 119.99975 * 179.97438 * 15 14 12 42 42 H 1.09007 * 109.46802 * 29.72511 * 20 11 10 43 43 H 1.08994 * 109.47208 * 149.72277 * 20 11 10 44 44 H 1.08997 * 109.47007 * 299.99636 * 21 20 11 45 45 H 1.09002 * 109.46802 * 59.99543 * 21 20 11 46 46 H 0.96703 * 116.99371 * 180.02562 * 24 22 21 47 47 H 1.08000 * 119.95551 * 179.70873 * 25 9 8 48 48 H 1.07995 * 120.04083 * 180.27745 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8313 -1.7105 6 6 2.2511 2.0396 1.2096 7 6 2.7147 3.3491 1.2113 8 6 2.9444 3.9970 2.4091 9 6 2.7138 3.3435 3.6059 10 6 2.9650 4.0540 4.9108 11 7 1.7987 4.8712 5.2544 12 6 1.7486 6.1862 4.8754 13 1 0.8216 6.6104 4.5188 14 6 2.8891 6.9739 4.9497 15 7 3.8904 6.6109 5.7231 16 14 3.0029 8.5492 3.9521 17 1 1.7537 8.7310 3.1700 18 1 3.1851 9.7033 4.8686 19 1 4.1601 8.4655 3.0252 20 6 0.6887 4.2834 6.0085 21 6 -0.3360 3.6982 5.0347 22 6 -1.4775 3.0930 5.8105 23 8 -1.4717 3.1260 7.0183 24 8 -2.5001 2.5164 5.1597 25 6 2.2582 2.0379 3.6077 26 6 2.0210 1.3860 2.4135 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.8893 2.3455 -2.6542 35 1 4.3883 2.2154 -0.9509 36 1 3.8744 0.7620 -1.8408 37 1 2.8950 3.8600 0.2771 38 1 3.3052 5.0149 2.4112 39 1 3.8415 4.6946 4.8130 40 1 3.1380 3.3191 5.6971 41 1 4.6875 7.1612 5.7747 42 1 1.0678 3.4925 6.6558 43 1 0.2140 5.0538 6.6160 44 1 -0.7151 4.4890 4.3875 45 1 0.1389 2.9277 4.4272 46 1 -3.2094 2.1423 5.7002 47 1 2.0836 1.5289 4.5441 48 1 1.6609 0.3678 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596290051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:54 Heat of formation + Delta-G solvation = -61.939053 kcal Electronic energy + Delta-G solvation = -27879.429094 eV Core-core repulsion = 24127.086105 eV Total energy + Delta-G solvation = -3752.342988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18681 -40.57014 -38.40197 -37.17344 -36.74827 -33.94183 -33.31603 -32.60214 -31.34266 -31.03659 -29.18784 -26.92501 -26.12666 -24.85238 -23.70704 -22.73733 -22.54860 -21.53932 -20.73335 -19.08373 -18.68423 -18.17392 -17.48151 -17.02443 -16.89092 -16.56173 -15.94633 -15.62053 -15.49108 -15.28335 -15.00320 -14.75516 -14.46579 -14.28562 -14.12007 -14.02866 -13.78726 -13.46214 -13.26733 -13.15767 -13.05792 -12.81814 -12.75029 -12.62960 -12.49551 -12.43712 -12.21765 -12.04190 -11.87075 -11.84789 -11.77655 -11.64206 -11.55168 -11.30344 -10.54063 -10.36727 -9.60991 -8.54618 -7.94164 -7.82451 -5.46256 0.72817 0.90384 1.26914 1.45089 1.49033 1.58297 2.20585 2.33466 2.54289 3.12243 3.29664 3.94031 4.01456 4.03666 4.16618 4.23502 4.26388 4.30855 4.33990 4.48372 4.57342 4.58366 4.63281 4.64912 4.68933 4.78562 4.81789 4.86431 4.89394 5.03207 5.03893 5.05050 5.09729 5.16117 5.31328 5.35184 5.38742 5.43991 5.55701 5.65000 5.65898 5.73048 5.81531 6.15827 6.19300 6.52206 6.58459 6.77278 7.07168 7.19443 7.83562 8.40213 9.15640 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.005120 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.696001 B = 5467.321310 C = 7773.227214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.632 5.632 4 C 0.117 3.883 5 C -0.165 4.165 6 C 0.206 3.794 7 C -0.202 4.202 8 C -0.068 4.068 9 C -0.143 4.143 10 C 0.192 3.808 11 N -0.584 5.584 12 C -0.263 4.263 13 H 0.053 0.947 14 C -0.024 4.024 15 N -0.915 5.915 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.166 3.834 21 C -0.123 4.123 22 C 0.493 3.507 23 O -0.552 6.552 24 O -0.512 6.512 25 C -0.079 4.079 26 C -0.196 4.196 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.424 0.576 47 H 0.118 0.882 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -14.847 -14.431 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.344 5.344 4 C -0.006 4.006 5 C -0.224 4.224 6 C 0.105 3.895 7 C -0.224 4.224 8 C -0.087 4.087 9 C -0.147 4.147 10 C 0.067 3.933 11 N -0.304 5.304 12 C -0.393 4.393 13 H 0.071 0.929 14 C -0.222 4.222 15 N -0.558 5.558 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.219 1.219 19 H -0.213 1.213 20 C 0.039 3.961 21 C -0.163 4.163 22 C 0.337 3.663 23 O -0.443 6.443 24 O -0.325 6.325 25 C -0.098 4.098 26 C -0.218 4.218 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.285 0.715 47 H 0.136 0.864 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.886 -14.671 -14.451 21.418 hybrid contribution -0.096 1.079 0.338 1.135 sum -5.982 -13.593 -14.113 20.487 Atomic orbital electron populations 1.22177 0.96232 1.02485 1.01600 1.21469 0.94059 0.81720 1.03180 1.46697 1.71816 1.13660 1.02259 1.21438 0.96764 0.97450 0.84928 1.22163 0.96736 1.02184 1.01279 1.17740 0.94068 0.91108 0.86613 1.20685 1.09217 0.94791 0.97720 1.20692 0.97595 0.98069 0.92356 1.20571 1.02910 0.94842 0.96383 1.19657 0.91600 0.91867 0.90175 1.43861 1.17607 1.07018 1.61922 1.19141 0.96423 0.86766 1.36959 0.92934 1.25811 0.98187 0.99898 0.98350 1.70143 1.07720 1.40202 1.37752 0.85518 0.77890 0.80185 0.78739 1.19201 1.21896 1.21271 1.20541 0.88438 0.95897 0.91200 1.22057 0.92275 1.01700 1.00282 1.23695 0.82581 0.73647 0.86400 1.90680 1.79157 1.57062 1.17360 1.84548 1.32956 1.69379 1.45641 1.20818 0.97665 0.93636 0.97700 1.20719 1.09494 1.00936 0.90628 0.94021 0.92742 0.90295 0.89360 0.90850 0.89243 0.91699 0.90569 0.94295 0.92181 0.85895 0.89066 0.91925 0.95332 0.93854 0.94086 0.94588 0.88662 0.87386 0.71482 0.86376 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 71.98 0.74 -1.81 16 2 C 0.12 1.91 5.88 86.38 0.51 2.42 16 3 N -0.63 -13.66 2.61 -697.29 -1.82 -15.47 16 4 C 0.12 2.10 5.88 86.38 0.51 2.61 16 5 C -0.17 -2.74 10.24 71.98 0.74 -2.00 16 6 C 0.21 5.91 6.55 38.22 0.25 6.16 16 7 C -0.20 -6.64 9.21 22.40 0.21 -6.43 16 8 C -0.07 -2.69 9.72 22.25 0.22 -2.47 16 9 C -0.14 -5.72 5.14 -19.84 -0.10 -5.83 16 10 C 0.19 9.06 5.43 85.63 0.46 9.52 16 11 N -0.58 -28.76 2.39 -706.35 -1.69 -30.45 16 12 C -0.26 -14.12 9.44 84.03 0.79 -13.33 16 13 H 0.05 2.84 7.91 -2.91 -0.02 2.82 16 14 C -0.02 -1.33 4.94 84.86 0.42 -0.92 16 15 N -0.92 -53.00 11.59 21.65 0.25 -52.75 16 16 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 C 0.17 7.25 5.00 86.38 0.43 7.68 16 21 C -0.12 -4.40 6.09 29.85 0.18 -4.22 16 22 C 0.49 15.87 8.33 71.24 0.59 16.46 16 23 O -0.55 -20.95 16.74 21.95 0.37 -20.58 16 24 O -0.51 -12.29 13.42 -51.39 -0.69 -12.98 16 25 C -0.08 -2.64 7.83 22.25 0.17 -2.46 16 26 C -0.20 -5.62 9.21 22.40 0.21 -5.41 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.07 8.07 -2.39 -0.02 1.05 16 31 H 0.07 1.20 6.20 -2.39 -0.01 1.18 16 32 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.06 1.30 6.20 -2.39 -0.01 1.29 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 3.63 6.14 -2.91 -0.02 3.62 16 38 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.06 3.40 5.66 -2.38 -0.01 3.39 16 40 H 0.03 1.30 7.82 -2.38 -0.02 1.29 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.04 1.77 7.87 -2.38 -0.02 1.76 16 43 H 0.04 1.69 8.00 -2.39 -0.02 1.67 16 44 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.11 3.74 5.84 -2.39 -0.01 3.73 16 46 H 0.42 5.92 9.10 -74.06 -0.67 5.24 16 47 H 0.12 3.67 8.05 -2.91 -0.02 3.65 16 48 H 0.14 3.17 6.14 -2.91 -0.02 3.16 16 Total: -1.00 -66.85 391.21 5.06 -61.79 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.28 Total: 24.39 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.32 Total: -0.04 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.26 Total: -98.67 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.32 Total: -33.57 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.85 5.06 -61.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596290051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.148 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds