Wall clock time and date at job start Tue Mar 31 2020 12:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46782 * 2 1 4 4 C 1.52998 * 109.46948 * 240.00343 * 2 1 3 5 5 C 1.50701 * 109.47198 * 64.99843 * 4 2 1 6 6 O 1.21276 * 120.00302 * 0.02562 * 5 4 2 7 7 N 1.34785 * 119.99739 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99581 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46949 * 179.97438 * 8 7 5 10 10 H 1.09000 * 110.01438 * 305.06372 * 9 8 7 11 11 C 1.53877 * 110.02788 * 66.45116 * 9 8 7 12 12 C 1.54269 * 106.59818 * 119.28927 * 11 9 8 13 13 C 1.54890 * 104.19724 * 23.60519 * 12 11 9 14 14 H 1.08994 * 110.75460 * 80.55568 * 13 12 11 15 15 N 1.46499 * 110.75800 * 203.74944 * 13 12 11 16 16 C 1.36938 * 119.99515 * 273.54794 * 15 13 12 17 17 H 1.07995 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99631 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99594 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00218 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47005 * 90.00291 * 20 18 16 22 22 H 1.48493 * 109.46795 * 210.00459 * 20 18 16 23 23 H 1.48504 * 109.46831 * 330.00222 * 20 18 16 24 24 C 1.54264 * 110.03355 * 183.61829 * 9 8 7 25 25 C 1.50696 * 109.47152 * 119.99993 * 2 1 3 26 26 C 1.34512 * 125.79090 * 240.02282 * 25 2 1 27 27 C 1.41379 * 106.84332 * 180.02562 * 26 25 2 28 28 C 1.34512 * 106.84086 * 0.02562 * 27 26 25 29 29 O 1.34301 * 125.79037 * 60.02877 * 25 2 1 30 30 H 1.09003 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47240 * 299.99987 * 1 2 3 32 32 H 1.09001 * 109.47144 * 60.00229 * 1 2 3 33 33 H 1.09001 * 109.46936 * 184.99519 * 4 2 1 34 34 H 1.08997 * 109.47236 * 304.99726 * 4 2 1 35 35 H 0.96998 * 119.99930 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.46817 * 299.99352 * 8 7 5 37 37 H 1.08997 * 109.47375 * 59.99572 * 8 7 5 38 38 H 1.09011 * 110.03193 * 238.56784 * 11 9 8 39 39 H 1.09001 * 110.03441 * 359.95146 * 11 9 8 40 40 H 1.08995 * 110.48808 * 142.28548 * 12 11 9 41 41 H 1.09007 * 110.48392 * 264.92768 * 12 11 9 42 42 H 0.97000 * 120.00081 * 93.54284 * 15 13 12 43 43 H 0.96995 * 119.99554 * 179.97438 * 19 18 16 44 44 H 1.09005 * 110.48420 * 335.78006 * 24 9 8 45 45 H 1.08990 * 110.48906 * 98.42744 * 24 9 8 46 46 H 1.08007 * 126.58064 * 359.97438 * 26 25 2 47 47 H 1.07997 * 126.58312 * 179.97438 * 27 26 25 48 48 H 1.07998 * 125.79383 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0117 1.0875 -2.3633 7 7 1.9844 -0.3918 -3.7003 8 6 1.5973 0.3651 -4.8933 9 6 2.1071 -0.3562 -6.1426 10 1 3.1822 -0.5194 -6.0665 11 6 1.3800 -1.7022 -6.3077 12 6 0.6420 -1.6413 -7.6610 13 6 1.4267 -0.5822 -8.4743 14 1 2.3270 -1.0173 -8.9080 15 7 0.5807 0.0029 -9.5175 16 6 0.4805 -0.6068 -10.7396 17 1 1.0254 -1.5186 -10.9345 18 6 -0.3207 -0.0522 -11.7283 19 7 -0.4166 -0.6380 -12.9031 20 14 -1.2627 1.5253 -11.3914 21 1 -0.4234 2.6923 -11.7645 22 1 -2.5118 1.5369 -12.1944 23 1 -1.6016 1.6007 -9.9476 24 6 1.7856 0.4757 -7.4013 25 6 2.0324 -0.7104 1.2304 26 6 2.8086 -0.1718 2.1879 27 6 3.0386 -1.1850 3.1468 28 6 2.3896 -2.2823 2.7177 29 8 1.7811 -1.9886 1.5570 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2952 35 1 2.4883 -1.2157 -3.7909 36 1 0.5110 0.4441 -4.9368 37 1 2.0325 1.3634 -4.8474 38 1 2.1023 -2.5186 -6.3127 39 1 0.6645 -1.8419 -5.4973 40 1 0.6793 -2.6098 -8.1598 41 1 -0.3911 -1.3242 -7.5183 42 1 0.0915 0.8220 -9.3426 43 1 -0.9767 -0.2507 -13.5938 44 1 0.9372 1.1347 -7.2166 45 1 2.6573 1.0522 -7.7106 46 1 3.1848 0.8402 2.2180 47 1 3.6237 -1.0954 4.0501 48 1 2.3620 -3.2372 3.2213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691263651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:21 Heat of formation + Delta-G solvation = -52.465998 kcal Electronic energy + Delta-G solvation = -26096.274941 eV Core-core repulsion = 22344.342735 eV Total energy + Delta-G solvation = -3751.932206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.48037 -40.95943 -39.53221 -36.64015 -35.93978 -34.95984 -33.81166 -33.02790 -30.81229 -29.73831 -29.19785 -28.43078 -25.66527 -24.54680 -23.77733 -22.64954 -21.79649 -21.22839 -20.78483 -20.45579 -19.54571 -18.42541 -17.77767 -17.20856 -16.94840 -16.80699 -16.63305 -16.30340 -15.91969 -15.47548 -15.24999 -14.85064 -14.46342 -14.41731 -14.15615 -14.06715 -13.96627 -13.69942 -13.52769 -13.44510 -13.17675 -13.09951 -12.70202 -12.46273 -12.32960 -12.25414 -12.10484 -11.97049 -11.94434 -11.83978 -11.67799 -11.52043 -11.25317 -10.93954 -10.81798 -10.76584 -10.01760 -9.35342 -9.27548 -8.02363 -5.34679 0.83655 1.37505 1.40056 1.47319 1.67665 1.73573 2.08909 2.29255 2.48127 3.28421 3.52282 3.64596 3.69160 3.72751 3.79680 4.00044 4.11867 4.15843 4.17896 4.32893 4.38844 4.44095 4.48595 4.61696 4.64879 4.66013 4.70758 4.75139 4.79453 4.88429 4.94092 4.96767 5.06082 5.06547 5.13132 5.15290 5.20676 5.21478 5.33315 5.40989 5.50512 5.56626 5.58589 5.63999 5.78839 6.23109 6.25724 6.60745 7.08967 7.30646 7.87318 8.04777 9.19271 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.033423 B = 0.001886 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.537395 B =14846.250337 C =15158.810500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.011 3.989 3 H 0.102 0.898 4 C -0.130 4.130 5 C 0.512 3.488 6 O -0.578 6.578 7 N -0.716 5.716 8 C 0.133 3.867 9 C -0.085 4.085 10 H 0.102 0.898 11 C -0.108 4.108 12 C -0.141 4.141 13 C 0.166 3.834 14 H 0.053 0.947 15 N -0.751 5.751 16 C -0.228 4.228 17 H 0.057 0.943 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.118 4.118 25 C -0.016 4.016 26 C -0.223 4.223 27 C -0.228 4.228 28 C -0.045 4.045 29 O -0.187 6.187 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.154 0.846 47 H 0.164 0.836 48 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -2.397 35.197 36.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 H 0.120 0.880 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.458 6.458 7 N -0.368 5.368 8 C 0.009 3.991 9 C -0.104 4.104 10 H 0.121 0.879 11 C -0.146 4.146 12 C -0.181 4.181 13 C 0.058 3.942 14 H 0.071 0.929 15 N -0.393 5.393 16 C -0.359 4.359 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.179 1.179 24 C -0.157 4.157 25 C -0.066 4.066 26 C -0.242 4.242 27 C -0.247 4.247 28 C -0.112 4.112 29 O -0.084 6.084 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.197 0.803 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.172 0.828 47 H 0.182 0.818 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.972 -2.013 34.921 36.111 hybrid contribution -0.581 0.565 -0.524 0.965 sum 8.391 -1.448 34.396 35.435 Atomic orbital electron populations 1.21915 0.93813 1.02179 1.02804 1.19423 0.96508 0.97872 0.86965 0.88002 1.21738 1.04593 1.00457 0.90127 1.20963 0.78443 0.85252 0.85398 1.90684 1.41524 1.26436 1.87167 1.45943 1.57530 1.28233 1.05114 1.21332 0.99296 0.95067 0.83400 1.21830 1.01506 0.94802 0.92249 0.87949 1.22142 0.99316 0.97088 0.96064 1.22893 0.99306 0.99359 0.96572 1.21460 0.92250 0.93163 0.87347 0.92930 1.42785 1.55874 1.29094 1.11550 1.19057 1.21918 1.05606 0.89286 0.92494 1.25493 1.01956 1.02608 0.95686 1.69884 1.45153 1.43060 1.05440 0.85424 0.78028 0.80178 0.78231 1.20368 1.22435 1.17941 1.22519 1.01682 0.97494 0.93984 1.22456 1.01952 0.82874 0.99334 1.21918 1.04038 1.02035 0.96189 1.22150 1.06110 0.93493 1.02940 1.24755 0.98011 1.02134 0.86270 1.83999 1.59881 1.28138 1.36338 0.92413 0.92476 0.91410 0.86418 0.86937 0.74690 0.92997 0.91908 0.89917 0.91160 0.93740 0.93591 0.80278 0.93449 0.91864 0.90506 0.82791 0.81809 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.92 71.98 0.64 -1.98 16 2 C 0.01 0.17 2.44 -11.54 -0.03 0.14 16 3 H 0.10 1.66 7.91 -2.39 -0.02 1.64 16 4 C -0.13 -1.58 5.16 29.85 0.15 -1.43 16 5 C 0.51 9.26 7.55 87.66 0.66 9.92 16 6 O -0.58 -15.27 13.97 -3.02 -0.04 -15.32 16 7 N -0.72 -10.72 5.29 -463.05 -2.45 -13.17 16 8 C 0.13 2.59 4.70 86.38 0.41 2.99 16 9 C -0.08 -1.63 2.98 -10.07 -0.03 -1.66 16 10 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 11 C -0.11 -2.26 6.13 31.32 0.19 -2.07 16 12 C -0.14 -4.52 6.51 31.67 0.21 -4.31 16 13 C 0.17 5.96 3.54 46.29 0.16 6.12 16 14 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 15 N -0.75 -34.82 5.06 -316.84 -1.60 -36.43 16 16 C -0.23 -13.00 10.46 84.03 0.88 -12.12 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 20 Si 0.95 46.16 27.74 68.60 1.90 48.06 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 24 C -0.12 -3.15 5.97 31.67 0.19 -2.96 16 25 C -0.02 -0.25 5.83 24.83 0.14 -0.11 16 26 C -0.22 -3.27 10.78 22.19 0.24 -3.03 16 27 C -0.23 -2.77 10.91 22.19 0.24 -2.53 16 28 C -0.04 -0.49 12.09 66.97 0.81 0.31 16 29 O -0.19 -2.91 10.65 -2.47 -0.03 -2.94 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.46 5.95 -2.39 -0.01 1.45 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.42 3.75 8.31 -92.71 -0.77 2.98 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.07 1.37 7.58 -2.39 -0.02 1.35 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.36 16.35 5.58 -92.71 -0.52 15.83 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.06 1.76 7.73 -2.38 -0.02 1.75 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 47 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 48 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -75.50 388.15 3.03 -72.47 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.39 Total: 26.83 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 5.34 Total: -16.18 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.75 Total: -112.93 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.07 Total: -18.25 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -75.50 3.03 -72.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691263651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.006 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds