Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 H 1.08998 * 109.47248 * 180.32368 * 7 6 5 9 9 C 1.52997 * 109.47464 * 300.32624 * 7 6 5 10 10 C 1.53004 * 109.47165 * 60.32604 * 7 6 5 11 11 C 1.50694 * 109.47132 * 174.99796 * 10 7 6 12 12 O 1.21278 * 120.00181 * 0.02562 * 11 10 7 13 13 N 1.34779 * 119.99862 * 180.02562 * 11 10 7 14 14 C 1.46502 * 120.00193 * 359.97438 * 13 11 10 15 15 C 1.46500 * 120.00119 * 180.02562 * 13 11 10 16 16 C 1.52999 * 109.47195 * 89.99498 * 15 13 11 17 17 N 1.46506 * 109.46922 * 180.02562 * 16 15 13 18 18 C 1.36936 * 119.99987 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99919 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00277 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47091 * 60.00318 * 22 20 18 24 24 H 1.48498 * 109.47504 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47414 * 300.00591 * 22 20 18 26 26 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 27 27 C 1.38146 * 120.05909 * 359.67357 * 26 6 5 28 28 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 29 29 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 31 31 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 33 33 H 1.08999 * 109.47351 * 300.00005 * 9 7 6 34 34 H 1.09009 * 109.47314 * 60.00045 * 9 7 6 35 35 H 1.09000 * 109.47122 * 179.97438 * 9 7 6 36 36 H 1.08996 * 109.46942 * 295.00098 * 10 7 6 37 37 H 1.09005 * 109.46989 * 55.00064 * 10 7 6 38 38 H 1.08997 * 109.47338 * 90.00170 * 14 13 11 39 39 H 1.08995 * 109.47307 * 210.00738 * 14 13 11 40 40 H 1.09008 * 109.46664 * 330.00391 * 14 13 11 41 41 H 1.08997 * 109.46992 * 209.99767 * 15 13 11 42 42 H 1.09003 * 109.46975 * 329.99428 * 15 13 11 43 43 H 1.08995 * 109.47130 * 299.99547 * 16 15 13 44 44 H 1.08994 * 109.47116 * 60.00310 * 16 15 13 45 45 H 0.97006 * 120.00093 * 359.97438 * 17 16 15 46 46 H 0.97002 * 120.00504 * 179.97438 * 21 20 18 47 47 H 1.08006 * 119.97147 * 179.69567 * 26 6 5 48 48 H 1.07993 * 120.03340 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 1 3.2356 5.8087 -0.0013 9 6 4.8612 5.1453 1.2468 10 6 4.8596 5.1453 -1.2516 11 6 5.4467 6.5318 -1.3155 12 8 5.1921 7.3387 -0.4467 13 7 6.2547 6.8750 -2.3382 14 6 6.5627 5.9000 -3.3874 15 6 6.8259 8.2226 -2.4000 16 6 8.1694 8.2412 -1.6682 17 7 8.7403 9.5890 -1.7295 18 6 9.9480 9.8486 -1.1386 19 1 10.4798 9.0596 -0.6276 20 6 10.4891 11.1255 -1.1971 21 7 9.8412 12.0869 -1.8202 22 14 12.1369 11.4795 -0.3916 23 1 13.1816 10.6188 -1.0025 24 1 12.4905 12.9074 -0.5944 25 1 12.0485 11.1937 1.0629 26 6 1.9212 3.6047 -0.0004 27 6 1.2916 2.3751 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0209 0.3797 -0.0005 32 1 5.1346 2.5748 0.0090 33 1 4.2391 5.0549 2.1372 34 1 5.6120 4.3550 1.2463 35 1 5.3565 6.1163 1.2462 36 1 5.6644 4.4116 -1.2085 37 1 4.2522 4.9668 -2.1390 38 1 5.8236 5.9784 -4.1846 39 1 7.5550 6.1017 -3.7908 40 1 6.5388 4.8944 -2.9673 41 1 6.9756 8.5063 -3.4417 42 1 6.1440 8.9284 -1.9256 43 1 8.0197 7.9575 -0.6265 44 1 8.8513 7.5355 -2.1425 45 1 8.2628 10.2976 -2.1888 46 1 10.2192 12.9794 -1.8609 47 1 1.3343 4.5114 -0.0003 48 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753272580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -62.121515 kcal Electronic energy + Delta-G solvation = -26218.415635 eV Core-core repulsion = 22466.064734 eV Total energy + Delta-G solvation = -3752.350901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36857 -40.82053 -38.88743 -37.42354 -36.05712 -35.43638 -33.41245 -32.05038 -30.73363 -29.82582 -28.56390 -28.06225 -27.31867 -25.57576 -24.09708 -23.61406 -23.09618 -21.20248 -19.96856 -19.19533 -19.08109 -18.15789 -17.40874 -16.99815 -16.62763 -16.56652 -16.45853 -16.23599 -15.56779 -15.38821 -15.16309 -15.04347 -14.76187 -14.48931 -14.30104 -14.14942 -14.11331 -13.80892 -13.35739 -13.27189 -13.06883 -13.01846 -12.85312 -12.83116 -12.62893 -12.36041 -12.24476 -12.17026 -12.03300 -11.89913 -11.85235 -11.69548 -11.49529 -10.97753 -10.67455 -9.91209 -9.63638 -9.07225 -9.01623 -7.98214 -5.29155 0.42847 0.46771 1.45486 1.49779 1.55846 1.69038 2.03532 2.42278 2.55654 2.81751 3.34678 3.52840 3.77274 3.95313 4.01433 4.04634 4.08135 4.14119 4.25775 4.26614 4.33294 4.37860 4.40549 4.48238 4.51146 4.57265 4.58915 4.70036 4.71948 4.76489 4.80080 4.87713 4.97122 5.02864 5.04907 5.11526 5.12557 5.25151 5.32120 5.40996 5.42634 5.50011 5.58356 5.76709 5.85485 6.22950 6.47950 6.48424 7.25739 7.29103 8.01162 8.26491 9.24816 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.031501 B = 0.001956 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.650839 B =14309.440485 C =14481.534764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.025 4.025 8 H 0.070 0.930 9 C -0.147 4.147 10 C -0.119 4.119 11 C 0.502 3.498 12 O -0.580 6.580 13 N -0.614 5.614 14 C 0.070 3.930 15 C 0.122 3.878 16 C 0.150 3.850 17 N -0.743 5.743 18 C -0.253 4.253 19 H 0.073 0.927 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.979 3.021 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.083 4.083 27 C -0.209 4.209 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.058 0.942 43 H -0.001 1.001 44 H 0.029 0.971 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.133 0.867 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.777 -27.674 -1.227 34.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.063 3.937 4 C -0.178 4.178 5 C -0.092 4.092 6 C -0.115 4.115 7 C -0.044 4.044 8 H 0.088 0.912 9 C -0.204 4.204 10 C -0.159 4.159 11 C 0.292 3.708 12 O -0.459 6.459 13 N -0.347 5.347 14 C -0.072 4.072 15 C -0.002 4.002 16 C 0.022 3.978 17 N -0.387 5.387 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.807 3.193 23 H -0.199 1.199 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.101 4.101 27 C -0.227 4.227 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.017 0.983 44 H 0.047 0.953 45 H 0.207 0.793 46 H 0.062 0.938 47 H 0.151 0.849 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.688 -27.514 -0.708 33.840 hybrid contribution 0.492 1.168 0.360 1.317 sum -19.196 -26.347 -0.349 32.600 Atomic orbital electron populations 1.23306 0.76693 1.05422 1.02115 1.86038 1.23268 1.27059 1.88802 1.19269 0.92836 0.84540 0.97051 1.20634 0.91587 0.99159 1.06458 1.20990 1.00704 0.90469 0.97012 1.19722 0.93632 0.94428 1.03676 1.19694 0.96812 0.93737 0.94144 0.91203 1.21916 0.99575 1.01956 0.96981 1.21808 1.01087 0.92186 1.00776 1.21465 0.78037 0.91079 0.80247 1.90688 1.61731 1.54186 1.39345 1.47963 1.47612 1.13447 1.25647 1.22131 1.02483 0.92355 0.90193 1.21297 0.93514 0.84304 1.01133 1.20944 0.93370 0.86927 0.96519 1.42398 1.22307 1.07399 1.66559 1.19565 0.96615 0.94987 1.27327 0.90907 1.25633 1.02912 0.95763 1.02242 1.69811 1.40897 1.01889 1.49131 0.85147 0.79369 0.76631 0.78201 1.19894 1.21715 1.20678 1.21070 0.94050 0.97678 0.97317 1.21405 1.00926 0.91881 1.08525 0.91797 0.86492 0.91990 0.84384 0.83842 0.92824 0.91746 0.93395 0.86462 0.86509 0.90469 0.90708 0.88368 0.89013 0.92368 0.98257 0.95303 0.79295 0.93788 0.84943 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.40 10.50 -92.33 -0.97 -6.37 16 3 C 0.11 1.82 6.69 22.51 0.15 1.97 16 4 C -0.16 -2.57 9.99 22.37 0.22 -2.34 16 5 C -0.07 -1.13 8.75 22.26 0.19 -0.93 16 6 C -0.11 -1.94 4.78 -19.85 -0.09 -2.04 16 7 C -0.02 -0.50 2.21 -11.54 -0.03 -0.52 16 8 H 0.07 1.61 7.69 -2.39 -0.02 1.59 16 9 C -0.15 -3.41 8.74 71.98 0.63 -2.78 16 10 C -0.12 -2.13 3.47 29.85 0.10 -2.03 16 11 C 0.50 14.17 7.39 87.65 0.65 14.82 16 12 O -0.58 -22.18 13.54 -3.02 -0.04 -22.22 16 13 N -0.61 -16.44 2.87 -846.76 -2.43 -18.87 16 14 C 0.07 1.13 10.24 127.77 1.31 2.44 16 15 C 0.12 4.26 5.52 86.38 0.48 4.73 16 16 C 0.15 6.51 6.58 86.38 0.57 7.08 16 17 N -0.74 -40.13 5.60 -343.45 -1.92 -42.05 16 18 C -0.25 -14.85 9.99 84.03 0.84 -14.01 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 21 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 22 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 C -0.08 -1.35 9.66 22.25 0.22 -1.13 16 27 C -0.21 -3.15 9.04 22.37 0.20 -2.94 16 28 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 29 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 31 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.14 1.69 7.15 -2.91 -0.02 1.67 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.26 7.37 -2.38 -0.02 1.24 16 35 H 0.05 1.46 5.95 -2.39 -0.01 1.45 16 36 H 0.12 1.56 6.84 -2.39 -0.02 1.55 16 37 H 0.12 1.56 8.11 -2.38 -0.02 1.54 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 40 H 0.10 1.04 6.44 -2.38 -0.02 1.03 16 41 H 0.09 2.90 8.07 -2.39 -0.02 2.88 16 42 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.38 21.20 7.67 -92.70 -0.71 20.49 16 46 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.13 1.86 7.94 -2.91 -0.02 1.84 16 48 H 0.14 1.53 6.30 -2.91 -0.02 1.51 16 Total: -1.00 -77.30 390.08 4.20 -73.10 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.24 Total: 27.73 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 7.02 Total: -0.28 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.07 Total: -121.18 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.01 Total: -28.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.30 4.20 -73.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753272580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.974 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds