Wall clock time and date at job start Tue Mar 31 2020 12:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47273 * 2 1 4 4 C 1.53000 * 109.47019 * 240.00259 * 2 1 3 5 5 N 1.46496 * 109.47471 * 64.99816 * 4 2 1 6 6 C 1.36931 * 120.00225 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00230 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00016 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99767 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47353 * 59.99900 * 10 8 6 12 12 H 1.48496 * 109.46853 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47248 * 299.99737 * 10 8 6 14 14 C 1.52998 * 109.47092 * 120.00326 * 2 1 3 15 15 N 1.46504 * 109.47360 * 294.99688 * 14 2 1 16 16 C 1.34770 * 120.00306 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99967 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.47152 * 55.00195 * 18 16 15 20 20 C 1.53002 * 109.46966 * 295.00335 * 18 16 15 21 21 O 1.42898 * 109.47171 * 175.00411 * 18 16 15 22 22 C 1.42899 * 114.00025 * 210.00101 * 21 18 16 23 23 C 1.50698 * 109.47148 * 179.97438 * 22 21 18 24 24 C 1.38234 * 120.00281 * 269.72694 * 23 22 21 25 25 C 1.38234 * 120.00364 * 179.76376 * 24 23 22 26 26 C 1.38236 * 119.99750 * 0.51361 * 25 24 23 27 27 C 1.38238 * 119.99744 * 359.73862 * 26 25 24 28 28 C 1.38227 * 120.00475 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47245 * 59.99786 * 1 2 3 30 30 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46772 * 299.99524 * 1 2 3 32 32 H 1.09004 * 109.46940 * 185.00387 * 4 2 1 33 33 H 1.09001 * 109.46900 * 304.99969 * 4 2 1 34 34 H 0.97005 * 119.99858 * 0.02562 * 5 4 2 35 35 H 0.96997 * 120.00284 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47396 * 174.99966 * 14 2 1 37 37 H 1.08998 * 109.47230 * 54.99715 * 14 2 1 38 38 H 0.97005 * 119.99180 * 359.97438 * 15 14 2 39 39 H 1.08996 * 109.47407 * 60.00310 * 20 18 16 40 40 H 1.09000 * 109.46986 * 180.02562 * 20 18 16 41 41 H 1.09002 * 109.47075 * 299.99352 * 20 18 16 42 42 H 1.09000 * 109.47064 * 299.99806 * 22 21 18 43 43 H 1.09007 * 109.47276 * 60.00167 * 22 21 18 44 44 H 1.08005 * 119.99877 * 359.97438 * 24 23 22 45 45 H 1.08001 * 120.00240 * 180.22403 * 25 24 23 46 46 H 1.08004 * 120.00172 * 179.72190 * 26 25 24 47 47 H 1.08004 * 119.99567 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.00743 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0019 -0.4202 -3.6855 7 1 2.5630 -1.3375 -3.7865 8 6 1.6351 0.2970 -4.8160 9 7 0.9518 1.4152 -4.6930 10 14 2.1113 -0.3249 -6.5119 11 1 1.5178 -1.6683 -6.7311 12 1 1.6048 0.6150 -7.5439 13 1 3.5903 -0.4153 -6.6087 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0352 2.4424 16 6 1.9956 -0.4137 3.6659 17 8 2.6256 -1.4439 3.7792 18 6 1.5965 0.3643 4.8934 19 1 0.5175 0.5190 4.8905 20 6 2.3061 1.7198 4.8910 21 8 1.9698 -0.3668 6.0630 22 6 1.1186 -0.1381 7.1878 23 6 1.6022 -0.9551 8.3581 24 6 1.1200 -2.2358 8.5533 25 6 1.5672 -2.9871 9.6240 26 6 2.4887 -2.4537 10.5057 27 6 2.9669 -1.1710 10.3134 28 6 2.5234 -0.4216 9.2400 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7197 -1.2952 34 1 1.1488 0.8595 -2.3517 35 1 0.6958 1.9166 -5.4829 36 1 3.1263 -0.7996 1.2056 37 1 1.6054 -1.7198 1.2951 38 1 1.1490 0.8594 2.3517 39 1 2.0213 2.2775 3.9989 40 1 2.0178 2.2823 5.7790 41 1 3.3851 1.5651 4.8940 42 1 1.1390 0.9198 7.4496 43 1 0.0989 -0.4309 6.9373 44 1 0.3964 -2.6508 7.8672 45 1 1.1932 -3.9891 9.7744 46 1 2.8348 -3.0390 11.3448 47 1 3.6866 -0.7541 11.0025 48 1 2.8967 0.5807 9.0900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753624285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:41 Heat of formation + Delta-G solvation = -78.260811 kcal Electronic energy + Delta-G solvation = -25658.139449 eV Core-core repulsion = 21905.088696 eV Total energy + Delta-G solvation = -3753.050753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12183 -40.19624 -38.73649 -37.99753 -35.97218 -34.31132 -33.37878 -32.14244 -31.79996 -31.34486 -27.83099 -27.25740 -27.04294 -25.10884 -23.92691 -23.48625 -22.26970 -21.64768 -21.11591 -19.25841 -18.41317 -18.13997 -17.54354 -16.99087 -16.83217 -16.45967 -16.39802 -16.10665 -15.68702 -15.46280 -15.35078 -15.06384 -14.72869 -14.30097 -14.27354 -14.16890 -13.83181 -13.66167 -13.57326 -13.40375 -13.28724 -12.99647 -12.95368 -12.77198 -12.42103 -12.21468 -12.17737 -11.99225 -11.92815 -11.83805 -11.69853 -11.64937 -11.03582 -10.93182 -10.51149 -10.12877 -9.83121 -9.76977 -8.98900 -7.95083 -5.23157 0.31395 0.49169 1.48087 1.50632 1.56421 1.56770 1.86491 2.56470 2.71153 3.18550 3.38440 3.64281 3.72824 3.86313 3.88539 3.96209 3.99285 4.07231 4.11312 4.14858 4.27992 4.35132 4.35464 4.39302 4.54959 4.63130 4.69679 4.72460 4.74937 4.76461 4.83426 4.94497 5.05373 5.06948 5.13192 5.14329 5.21743 5.32250 5.40082 5.48966 5.50448 5.53674 5.60100 5.65226 6.04773 6.10457 6.27503 6.55343 7.21844 7.34620 8.09642 8.34534 9.27948 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.001690 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.256570 B =16563.109904 C =16831.782648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.250 4.250 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.139 3.861 15 N -0.708 5.708 16 C 0.507 3.493 17 O -0.577 6.577 18 C 0.073 3.927 19 H 0.120 0.880 20 C -0.166 4.166 21 O -0.383 6.383 22 C 0.097 3.903 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.135 4.135 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.110 4.110 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 0.313 32.880 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.382 4.382 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.616 5.616 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.014 3.986 15 N -0.362 5.362 16 C 0.294 3.706 17 O -0.455 6.455 18 C 0.013 3.987 19 H 0.138 0.862 20 C -0.224 4.224 21 O -0.302 6.302 22 C 0.022 3.978 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.153 4.153 26 C -0.140 4.140 27 C -0.150 4.150 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.143 0.857 45 H 0.156 0.844 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.417 -0.666 32.850 32.887 hybrid contribution -0.231 0.286 -1.384 1.432 sum -1.648 -0.380 31.466 31.511 Atomic orbital electron populations 1.21735 0.93718 1.01925 1.01938 1.21323 0.97268 1.00119 0.92459 0.89990 1.20728 0.96473 0.94157 0.85797 1.42469 1.66816 1.27804 1.01236 1.19597 1.28087 1.05389 0.85159 0.90989 1.25518 1.01617 0.97861 1.01415 1.69785 1.44943 1.17723 1.29194 0.85233 0.77853 0.77175 0.79615 1.20543 1.21928 1.20573 1.21124 0.99439 0.95041 0.82972 1.45804 1.57588 1.28199 1.04605 1.21077 0.78939 0.85200 0.85405 1.90711 1.41153 1.26497 1.87177 1.22027 1.01850 0.91428 0.83444 0.86202 1.22247 1.01020 0.93908 1.05203 1.88110 1.54035 1.68484 1.19552 1.21603 0.93303 0.99291 0.83613 1.19813 0.99231 0.95610 0.96284 1.21315 1.00299 0.93842 0.97987 1.21454 0.98116 1.00671 0.95035 1.21552 0.96760 0.95955 0.99749 1.21489 1.00430 0.94894 0.98230 1.21337 0.95937 1.00971 0.94604 0.93790 0.93122 0.90232 0.96411 0.96228 0.79000 0.93941 0.92406 0.92006 0.74572 0.88931 0.88972 0.92984 0.89847 0.91107 0.85729 0.84366 0.83892 0.83865 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.94 71.98 0.64 -3.05 16 2 C -0.09 -2.70 2.46 -10.79 -0.03 -2.73 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.14 5.65 86.38 0.49 6.63 16 5 N -0.74 -37.08 5.33 -343.45 -1.83 -38.91 16 6 C -0.25 -14.06 9.99 84.04 0.84 -13.22 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -4.10 5.50 84.87 0.47 -3.63 16 9 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 10 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.14 3.70 5.06 86.38 0.44 4.13 16 15 N -0.71 -14.85 5.24 -463.06 -2.43 -17.28 16 16 C 0.51 12.76 7.18 87.66 0.63 13.39 16 17 O -0.58 -20.97 16.51 15.95 0.26 -20.71 16 18 C 0.07 1.24 3.13 29.85 0.09 1.34 16 19 H 0.12 1.20 7.79 -2.39 -0.02 1.18 16 20 C -0.17 -2.03 9.48 71.98 0.68 -1.34 16 21 O -0.38 -8.52 9.51 -129.99 -1.24 -9.76 16 22 C 0.10 1.47 5.87 71.24 0.42 1.89 16 23 C -0.11 -1.94 5.51 -19.87 -0.11 -2.05 16 24 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 27 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 28 C -0.11 -1.74 9.70 22.27 0.22 -1.52 16 29 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.55 7.18 -2.39 -0.02 1.54 16 32 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.38 19.67 6.85 -92.70 -0.64 19.04 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.42 5.93 7.44 -92.70 -0.69 5.24 16 39 H 0.09 0.79 7.92 -2.39 -0.02 0.77 16 40 H 0.09 0.72 7.87 -2.39 -0.02 0.71 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.82 7.81 -2.39 -0.02 0.80 16 43 H 0.07 0.86 8.03 -2.38 -0.02 0.84 16 44 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 47 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -76.78 400.34 2.37 -74.42 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.38 Total: 29.06 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.67 Total: -6.97 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.98 Total: -114.19 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.97 Total: -30.47 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.78 2.37 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.844 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds