Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46715 * 2 1 4 4 N 1.46498 * 109.47053 * 120.00027 * 2 1 3 5 5 C 1.36938 * 119.99901 * 274.99892 * 4 2 1 6 6 H 1.08001 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99831 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47177 * 59.99711 * 9 7 5 11 11 H 1.48498 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46680 * 299.99646 * 9 7 5 13 13 C 1.53001 * 109.46965 * 240.00268 * 2 1 3 14 14 H 1.09006 * 109.51967 * 300.07523 * 13 2 1 15 15 C 1.53031 * 109.50021 * 60.16189 * 13 2 1 16 16 C 1.53039 * 109.54092 * 181.31943 * 15 13 2 17 17 C 1.53634 * 109.23967 * 298.51125 * 16 15 13 18 18 N 1.46918 * 108.54144 * 54.85235 * 17 16 15 19 19 C 1.34780 * 120.63380 * 126.37242 * 18 17 16 20 20 O 1.21273 * 120.00836 * 179.72049 * 19 18 17 21 21 C 1.50710 * 119.99368 * 359.71887 * 19 18 17 22 22 C 1.52998 * 109.47060 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47064 * 179.97438 * 22 21 19 24 24 C 1.41385 * 126.57985 * 90.00242 * 23 22 21 25 25 C 1.34507 * 106.84104 * 179.73601 * 24 23 22 26 26 O 1.34300 * 108.42410 * 359.97438 * 25 24 23 27 27 C 1.34307 * 109.47608 * 359.97438 * 26 25 24 28 28 C 1.46928 * 118.74127 * 306.09454 * 18 17 16 29 29 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47018 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47138 * 60.00076 * 1 2 3 32 32 H 0.97001 * 120.00433 * 94.99874 * 4 2 1 33 33 H 0.97000 * 120.00082 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46108 * 301.33777 * 15 13 2 35 35 H 1.08998 * 109.46392 * 61.29441 * 15 13 2 36 36 H 1.08999 * 109.49892 * 58.57858 * 16 15 13 37 37 H 1.08995 * 109.50149 * 178.68504 * 16 15 13 38 38 H 1.09002 * 109.73425 * 295.11967 * 17 16 15 39 39 H 1.08992 * 109.66549 * 174.55012 * 17 16 15 40 40 H 1.08998 * 109.47150 * 59.99692 * 21 19 18 41 41 H 1.09000 * 109.46941 * 300.00185 * 21 19 18 42 42 H 1.09002 * 109.46661 * 59.99971 * 22 21 19 43 43 H 1.09003 * 109.47111 * 300.00622 * 22 21 19 44 44 H 1.08003 * 126.57418 * 359.76478 * 24 23 22 45 45 H 1.08001 * 125.78820 * 179.97438 * 25 24 23 46 46 H 1.07996 * 125.79095 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.58731 * 173.64591 * 28 18 17 48 48 H 1.08993 * 109.59006 * 294.07560 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6124 -0.6617 3.5090 8 7 2.9254 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8057 5.5288 11 1 3.2992 -0.6484 6.1684 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7212 -1.2493 14 1 1.6760 -1.7487 -1.2508 15 6 1.5336 0.0021 -2.4992 16 6 2.0158 -0.7374 -3.7492 17 6 3.5519 -0.7344 -3.7783 18 7 4.0442 -1.3005 -2.5151 19 6 4.9168 -2.3276 -2.5167 20 8 5.3197 -2.7829 -1.4673 21 6 5.3918 -2.9106 -3.8228 22 6 6.3689 -4.0547 -3.5452 23 6 6.8435 -4.6380 -4.8512 24 6 7.9738 -4.2288 -5.5955 25 6 8.0297 -5.0169 -6.6840 26 8 6.9994 -5.8772 -6.6386 27 6 6.2771 -5.6526 -5.5288 28 6 3.5719 -0.7216 -1.2499 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1527 33 1 3.2487 -2.3960 4.2419 34 1 0.4438 0.0253 -2.4888 35 1 1.9182 1.0219 -2.5095 36 1 1.6521 -1.7647 -3.7273 37 1 1.6354 -0.2351 -4.6386 38 1 3.9159 0.2873 -3.8873 39 1 3.9042 -1.3409 -4.6125 40 1 5.8939 -2.1375 -4.4045 41 1 4.5375 -3.2898 -4.3835 42 1 5.8671 -4.8279 -2.9634 43 1 7.2232 -3.6750 -2.9846 44 1 8.6608 -3.4360 -5.3388 45 1 8.7765 -4.9665 -7.4626 46 1 5.3910 -6.1938 -5.2317 47 1 3.9375 -1.3199 -0.4153 48 1 3.9376 0.3010 -1.1569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753791391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = -45.172966 kcal Electronic energy + Delta-G solvation = -27123.473456 eV Core-core repulsion = 23371.857499 eV Total energy + Delta-G solvation = -3751.615956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41281 -41.27608 -39.16081 -36.93458 -35.82490 -34.63574 -33.10010 -32.49558 -31.36396 -30.26064 -29.58955 -26.77327 -26.19181 -25.00506 -23.98958 -22.43431 -22.25813 -21.15131 -20.94911 -19.77961 -19.15104 -18.55071 -17.72614 -16.99521 -16.77525 -16.74469 -16.60854 -15.80243 -15.58681 -15.43645 -15.29389 -14.93693 -14.81703 -14.30941 -14.13625 -13.99386 -13.78864 -13.63658 -13.47446 -13.26347 -13.12576 -13.06655 -12.88869 -12.75258 -12.52326 -12.35249 -12.17949 -11.98753 -11.90041 -11.80295 -11.66253 -11.36493 -11.18338 -10.95139 -10.77214 -10.51006 -9.57736 -9.40465 -8.98620 -7.91648 -5.20182 0.90887 1.43889 1.47766 1.53684 1.65375 1.67221 2.09241 2.35915 2.56271 3.41380 3.52668 3.75179 3.87288 3.91628 3.97340 4.00551 4.13930 4.16871 4.20312 4.29002 4.35558 4.40280 4.45931 4.59833 4.61606 4.70632 4.79997 4.82258 4.87773 4.87965 4.95240 4.97890 5.04852 5.07958 5.12061 5.19873 5.24427 5.29428 5.36675 5.39939 5.50060 5.56543 5.58037 5.62162 5.66170 6.24968 6.29287 6.50392 7.24374 7.34318 8.12901 8.34429 9.31789 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002774 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.133804 B =10091.320751 C =11402.779068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.046 0.954 4 N -0.737 5.737 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.278 1.278 13 C -0.088 4.088 14 H 0.049 0.951 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.099 3.901 18 N -0.611 5.611 19 C 0.497 3.503 20 O -0.596 6.596 21 C -0.114 4.114 22 C -0.032 4.032 23 C -0.192 4.192 24 C -0.228 4.228 25 C -0.038 4.038 26 O -0.189 6.189 27 C -0.043 4.043 28 C 0.129 3.871 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.367 0.633 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.155 0.845 45 H 0.235 0.765 46 H 0.221 0.779 47 H 0.047 0.953 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -0.212 -28.487 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 H 0.064 0.936 4 N -0.377 5.377 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.204 1.204 13 C -0.108 4.108 14 H 0.068 0.932 15 C -0.148 4.148 16 C -0.165 4.165 17 C -0.023 4.023 18 N -0.343 5.343 19 C 0.287 3.713 20 O -0.476 6.476 21 C -0.153 4.153 22 C -0.070 4.070 23 C -0.193 4.193 24 C -0.247 4.247 25 C -0.105 4.105 26 O -0.085 6.085 27 C -0.110 4.110 28 C 0.006 3.994 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.173 0.827 45 H 0.251 0.749 46 H 0.238 0.762 47 H 0.065 0.935 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.788 -0.498 -28.050 28.309 hybrid contribution 0.379 -0.015 2.091 2.126 sum 4.167 -0.514 -25.958 26.296 Atomic orbital electron populations 1.22319 0.97407 1.00551 1.00998 1.20491 0.93013 0.94950 0.85257 0.93628 1.42680 1.78395 1.10120 1.06501 1.19579 1.34522 0.94111 0.88310 0.90498 1.25580 1.03304 0.96838 1.01618 1.69850 1.52816 1.10428 1.29268 0.85243 0.78006 0.77242 0.79498 1.20154 1.22600 1.20449 1.21583 0.93691 0.99491 0.96067 0.93242 1.21621 1.01679 0.99244 0.92207 1.21995 0.94441 1.01370 0.98737 1.22232 0.95132 1.00427 0.84463 1.48348 1.44201 1.33572 1.08169 1.21605 0.78189 0.79233 0.92279 1.90750 1.58642 1.61968 1.36287 1.21634 1.01195 0.99262 0.93227 1.19558 0.98295 0.96688 0.92439 1.20476 0.99028 1.00622 0.99172 1.22014 1.00885 1.04788 0.97022 1.24673 0.92447 0.91597 1.01770 1.84086 1.34178 1.50503 1.39710 1.24310 0.99550 1.00621 0.86524 1.21290 0.94685 0.97527 0.85895 0.94531 0.94791 0.90023 0.80155 0.94361 0.90039 0.90795 0.92071 0.87224 0.89817 0.86944 0.86570 0.86380 0.91887 0.92219 0.82698 0.74859 0.76226 0.93450 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.15 71.98 0.66 -4.64 16 2 C 0.17 6.72 2.47 44.99 0.11 6.83 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.74 -38.70 4.52 -322.94 -1.46 -40.16 16 5 C -0.23 -13.40 9.93 84.03 0.83 -12.56 16 6 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 8 N -0.97 -63.56 13.06 21.65 0.28 -63.28 16 9 Si 0.97 48.36 29.55 68.60 2.03 50.38 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C -0.09 -2.86 1.97 -10.72 -0.02 -2.88 16 14 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 15 C -0.11 -2.31 4.85 30.62 0.15 -2.16 16 16 C -0.13 -1.93 6.10 30.82 0.19 -1.74 16 17 C 0.10 1.59 6.37 86.51 0.55 2.14 16 18 N -0.61 -17.08 2.97 -818.06 -2.43 -19.51 16 19 C 0.50 15.52 7.70 87.66 0.67 16.19 16 20 O -0.60 -26.23 15.39 -3.01 -0.05 -26.28 16 21 C -0.11 -2.24 4.03 29.85 0.12 -2.12 16 22 C -0.03 -0.72 5.02 29.85 0.15 -0.57 16 23 C -0.19 -3.62 5.42 -19.94 -0.11 -3.73 16 24 C -0.23 -3.72 10.87 22.19 0.24 -3.48 16 25 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 26 O -0.19 -3.15 10.65 -2.50 -0.03 -3.17 16 27 C -0.04 -0.70 12.01 66.97 0.80 0.10 16 28 C 0.13 4.69 5.47 86.36 0.47 5.17 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.12 6.41 -2.39 -0.02 2.10 16 32 H 0.37 21.54 7.61 -92.71 -0.71 20.83 16 33 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.08 1.55 6.37 -2.38 -0.02 1.54 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.14 5.93 -2.39 -0.01 1.13 16 40 H 0.12 1.73 7.93 -2.39 -0.02 1.71 16 41 H 0.12 1.70 7.70 -2.39 -0.02 1.69 16 42 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 43 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 44 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 45 H 0.24 1.11 8.06 -2.91 -0.02 1.08 16 46 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.05 2.30 6.51 -2.38 -0.02 2.28 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -81.74 384.59 4.69 -77.04 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.24 Total: 32.56 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.10 Total: -7.59 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -3.60 Total: -122.95 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.07 Total: -29.45 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -81.74 4.69 -77.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753791391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.872 kcal (2) G-P(sol) polarization free energy of solvation -81.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds