Wall clock time and date at job start Tue Mar 31 2020 13:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46865 * 2 1 4 4 C 1.46494 * 120.00149 * 275.94134 * 3 2 1 5 5 C 1.53007 * 109.47145 * 270.00372 * 4 3 2 6 6 N 1.46494 * 109.47145 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99972 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99939 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99521 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99994 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46852 * 90.00122 * 11 9 7 13 13 H 1.48504 * 109.47176 * 209.99730 * 11 9 7 14 14 H 1.48497 * 109.47379 * 329.99858 * 11 9 7 15 15 C 1.34779 * 119.99591 * 95.94118 * 3 2 1 16 16 O 1.21286 * 119.99603 * 183.99855 * 15 3 2 17 17 C 1.50700 * 120.00197 * 4.00126 * 15 3 2 18 18 H 1.09001 * 109.47096 * 312.98173 * 17 15 3 19 19 C 1.52994 * 109.46963 * 72.98581 * 17 15 3 20 20 C 1.50704 * 109.47039 * 192.98656 * 17 15 3 21 21 C 1.38288 * 119.97086 * 299.72819 * 20 17 15 22 22 C 1.38246 * 120.11025 * 179.72498 * 21 20 17 23 23 C 1.38164 * 120.05447 * 0.54559 * 22 21 20 24 24 C 1.38718 * 119.94614 * 359.72683 * 23 22 21 25 25 O 1.35896 * 120.05816 * 179.97438 * 24 23 22 26 26 C 1.42895 * 116.99908 * 0.02562 * 25 24 23 27 27 C 1.38124 * 119.97091 * 119.99652 * 20 17 15 28 28 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47049 * 299.99815 * 1 2 3 30 30 H 1.09001 * 109.47520 * 59.99836 * 1 2 3 31 31 H 1.08997 * 109.46720 * 240.00538 * 2 1 3 32 32 H 1.08995 * 109.47230 * 119.99880 * 2 1 3 33 33 H 1.08999 * 109.47341 * 29.99870 * 4 3 2 34 34 H 1.09000 * 109.47533 * 150.00368 * 4 3 2 35 35 H 1.08999 * 109.46591 * 299.99957 * 5 4 3 36 36 H 1.09000 * 109.46908 * 59.99613 * 5 4 3 37 37 H 0.97007 * 120.00497 * 359.97438 * 6 5 4 38 38 H 0.97005 * 119.99447 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.47595 * 306.15643 * 19 17 15 40 40 H 1.09005 * 109.47405 * 66.16112 * 19 17 15 41 41 H 1.09005 * 109.47063 * 186.15379 * 19 17 15 42 42 H 1.07999 * 119.94367 * 359.97438 * 21 20 17 43 43 H 1.07992 * 119.97167 * 180.24824 * 22 21 20 44 44 H 1.07995 * 120.03322 * 179.70524 * 23 22 21 45 45 H 1.09004 * 109.47634 * 299.99674 * 26 25 24 46 46 H 1.09000 * 109.47478 * 59.99864 * 26 25 24 47 47 H 1.09001 * 109.47380 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.02821 * 0.02942 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1386 2.1156 -1.2618 5 6 3.5333 1.8930 -1.8505 6 7 3.6538 2.6279 -3.1121 7 6 4.8224 2.5785 -3.8243 8 1 5.6550 1.9974 -3.4562 9 6 4.9364 3.2744 -5.0200 10 7 6.0594 3.2264 -5.7047 11 14 3.4961 4.2789 -5.6570 12 1 3.5869 5.6641 -5.1295 13 1 3.5330 4.3111 -7.1412 14 1 2.2234 3.6602 -5.2069 15 6 2.3568 1.9763 1.1610 16 8 2.6917 3.1419 1.1699 17 6 2.3192 1.1933 2.4480 18 1 1.3809 0.6420 2.5107 19 6 3.4914 0.2106 2.4816 20 6 2.4241 2.1404 3.6155 21 6 3.5389 2.9471 3.7527 22 6 3.6355 3.8211 4.8195 23 6 2.6231 3.8825 5.7576 24 6 1.5063 3.0704 5.6253 25 8 0.5093 3.1286 6.5470 26 6 0.6769 4.0496 7.6266 27 6 1.4091 2.1981 4.5506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3864 1.7568 -1.9643 34 1 1.9870 3.1795 -1.0791 35 1 4.2856 2.2519 -1.1481 36 1 3.6849 0.8292 -2.0333 37 1 2.9059 3.1496 -3.4430 38 1 6.1389 3.7125 -6.5405 39 1 3.4774 -0.4026 1.5806 40 1 4.4288 0.7648 2.5294 41 1 3.4031 -0.4304 3.3588 42 1 4.3335 2.8970 3.0230 43 1 4.5053 4.4529 4.9222 44 1 2.7011 4.5620 6.5933 45 1 1.5776 3.7948 8.1852 46 1 0.7690 5.0609 7.2305 47 1 -0.1882 3.9961 8.2875 48 1 0.5409 1.5645 4.4456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754085064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:36 Heat of formation + Delta-G solvation = -30.583776 kcal Electronic energy + Delta-G solvation = -27101.450499 eV Core-core repulsion = 23350.467177 eV Total energy + Delta-G solvation = -3750.983322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73690 -39.85323 -37.75480 -36.20437 -34.92945 -33.92270 -31.75201 -30.92218 -30.52497 -29.40274 -27.92811 -27.56394 -24.97829 -23.76476 -23.15668 -22.71020 -21.67208 -20.95818 -19.11746 -17.78781 -17.58138 -17.23658 -16.33907 -16.14893 -16.00849 -15.92620 -15.24829 -14.78786 -14.35562 -14.06968 -13.91227 -13.85700 -13.71210 -13.64137 -13.45038 -13.09313 -12.77156 -12.69183 -12.57146 -12.37505 -12.23574 -11.94310 -11.69442 -11.55401 -11.43466 -11.22686 -11.15989 -11.10753 -11.01501 -10.90053 -10.71014 -10.15382 -9.63068 -9.57322 -8.96633 -8.87632 -8.56183 -8.28937 -7.22462 -5.74762 -3.10720 1.14556 1.37554 2.70055 2.92960 3.09184 3.39512 3.43453 3.47602 3.66370 4.36455 4.47076 4.61479 4.62458 4.75349 4.79431 4.83465 4.88513 4.90609 4.99572 5.05915 5.13941 5.21878 5.27061 5.34198 5.39849 5.45590 5.47969 5.53593 5.59146 5.61933 5.63426 5.70392 5.77999 5.86633 5.93815 5.99487 6.04359 6.13475 6.36432 6.47632 6.52853 6.60307 6.66477 6.83378 7.20104 7.47217 8.00426 8.27327 8.43683 9.22277 9.94604 10.13944 11.43578 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.002728 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.390481 B =10262.858509 C =10866.646184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 N -0.606 5.606 4 C 0.104 3.896 5 C 0.148 3.852 6 N -0.754 5.754 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.518 3.482 16 O -0.523 6.523 17 C -0.071 4.071 18 H 0.101 0.899 19 C -0.145 4.145 20 C -0.031 4.031 21 C -0.112 4.112 22 C -0.083 4.083 23 C -0.207 4.207 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.029 3.971 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.098 0.902 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 -6.371 26.414 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.029 4.029 3 N -0.339 5.339 4 C -0.019 4.019 5 C 0.020 3.980 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.305 3.695 16 O -0.398 6.398 17 C -0.092 4.092 18 H 0.119 0.881 19 C -0.202 4.202 20 C -0.032 4.032 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.226 4.226 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.163 4.163 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.450 -5.905 26.354 29.739 hybrid contribution -0.863 0.970 -0.534 1.404 sum -13.313 -4.935 25.820 29.466 Atomic orbital electron populations 1.22210 0.95919 1.02237 1.02628 1.21783 0.94460 0.82744 1.03921 1.47848 1.65234 1.14254 1.06609 1.21695 0.98672 0.97813 0.83670 1.20877 0.93673 0.95441 0.88045 1.42566 1.15109 1.59281 1.23016 1.19026 0.91062 1.25694 1.01413 0.89257 1.24675 0.96866 1.00273 0.97398 1.69707 1.25018 1.46776 1.16725 0.86520 0.82852 0.80859 0.78135 1.20988 1.21706 1.20350 1.20373 0.77023 0.87424 0.84685 1.90745 1.46431 1.16368 1.86241 1.20289 1.02079 0.95965 0.90872 0.88061 1.21893 0.97022 0.98265 1.03021 1.19100 0.93826 0.96430 0.93846 1.20941 0.98410 0.96128 0.97587 1.20931 0.98047 0.97611 0.93555 1.21208 0.95619 1.03202 1.02574 1.18875 0.87858 0.95843 0.90075 1.86042 1.42155 1.60090 1.35127 1.23023 1.03024 0.92449 0.88169 1.20189 1.00274 1.01476 0.94340 0.91417 0.92566 0.92067 0.89856 0.89602 0.90668 0.89785 0.95210 0.95626 0.80674 0.93055 0.91014 0.91299 0.91104 0.85535 0.85725 0.85742 0.92735 0.92700 0.88388 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.23 37.16 0.38 -1.02 16 2 C 0.09 0.89 5.53 -4.04 -0.02 0.86 16 3 N -0.61 -8.09 2.47 -173.69 -0.43 -8.52 16 4 C 0.10 1.70 5.57 -4.04 -0.02 1.68 16 5 C 0.15 3.00 6.58 -4.04 -0.03 2.97 16 6 N -0.75 -18.63 5.41 -59.91 -0.32 -18.95 16 7 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 11 Si 0.89 22.59 27.74 -169.99 -4.71 17.88 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 15 C 0.52 7.47 6.85 -10.98 -0.08 7.39 16 16 O -0.52 -9.73 14.29 5.55 0.08 -9.66 16 17 C -0.07 -0.75 2.04 -92.92 -0.19 -0.94 16 18 H 0.10 0.85 7.02 -51.93 -0.36 0.49 16 19 C -0.14 -1.29 8.66 37.15 0.32 -0.97 16 20 C -0.03 -0.38 4.52 -104.64 -0.47 -0.85 16 21 C -0.11 -1.43 7.77 -39.56 -0.31 -1.74 16 22 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 23 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 24 C 0.12 1.35 6.69 -39.21 -0.26 1.08 16 25 O -0.32 -3.33 10.50 -19.41 -0.20 -3.54 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 C -0.14 -1.65 9.61 -39.43 -0.38 -2.03 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.09 0.63 4.46 -51.93 -0.23 0.40 16 33 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.08 1.53 7.37 -51.93 -0.38 1.14 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.36 8.63 5.53 -40.82 -0.23 8.41 16 38 H 0.26 7.87 8.31 -40.82 -0.34 7.54 16 39 H 0.07 0.59 6.12 -51.93 -0.32 0.27 16 40 H 0.07 0.69 7.17 -51.93 -0.37 0.32 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.13 1.70 7.16 -52.49 -0.38 1.32 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.01 6.30 -52.49 -0.33 0.68 16 45 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 46 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.13 1.24 7.94 -52.49 -0.42 0.83 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -36.00 385.97 -7.70 -43.70 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.62 Total: 5.87 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.07 Total: -3.49 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.02 Total: -56.59 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.12 Total: -13.19 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.00 -7.70 -43.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754085064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.116 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds