Wall clock time and date at job start Tue Mar 31 2020 13:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46865 * 2 1 4 4 C 1.46494 * 120.00149 * 275.94134 * 3 2 1 5 5 C 1.53007 * 109.47145 * 270.00372 * 4 3 2 6 6 N 1.46494 * 109.47145 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99972 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99939 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99521 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99994 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46852 * 90.00122 * 11 9 7 13 13 H 1.48504 * 109.47176 * 209.99730 * 11 9 7 14 14 H 1.48497 * 109.47379 * 329.99858 * 11 9 7 15 15 C 1.34779 * 119.99591 * 95.94118 * 3 2 1 16 16 O 1.21286 * 119.99603 * 183.99855 * 15 3 2 17 17 C 1.50700 * 120.00197 * 4.00126 * 15 3 2 18 18 H 1.09001 * 109.47096 * 312.98173 * 17 15 3 19 19 C 1.52994 * 109.46963 * 72.98581 * 17 15 3 20 20 C 1.50704 * 109.47039 * 192.98656 * 17 15 3 21 21 C 1.38288 * 119.97086 * 299.72819 * 20 17 15 22 22 C 1.38246 * 120.11025 * 179.72498 * 21 20 17 23 23 C 1.38164 * 120.05447 * 0.54559 * 22 21 20 24 24 C 1.38718 * 119.94614 * 359.72683 * 23 22 21 25 25 O 1.35896 * 120.05816 * 179.97438 * 24 23 22 26 26 C 1.42895 * 116.99908 * 0.02562 * 25 24 23 27 27 C 1.38124 * 119.97091 * 119.99652 * 20 17 15 28 28 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47049 * 299.99815 * 1 2 3 30 30 H 1.09001 * 109.47520 * 59.99836 * 1 2 3 31 31 H 1.08997 * 109.46720 * 240.00538 * 2 1 3 32 32 H 1.08995 * 109.47230 * 119.99880 * 2 1 3 33 33 H 1.08999 * 109.47341 * 29.99870 * 4 3 2 34 34 H 1.09000 * 109.47533 * 150.00368 * 4 3 2 35 35 H 1.08999 * 109.46591 * 299.99957 * 5 4 3 36 36 H 1.09000 * 109.46908 * 59.99613 * 5 4 3 37 37 H 0.97007 * 120.00497 * 359.97438 * 6 5 4 38 38 H 0.97005 * 119.99447 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.47595 * 306.15643 * 19 17 15 40 40 H 1.09005 * 109.47405 * 66.16112 * 19 17 15 41 41 H 1.09005 * 109.47063 * 186.15379 * 19 17 15 42 42 H 1.07999 * 119.94367 * 359.97438 * 21 20 17 43 43 H 1.07992 * 119.97167 * 180.24824 * 22 21 20 44 44 H 1.07995 * 120.03322 * 179.70524 * 23 22 21 45 45 H 1.09004 * 109.47634 * 299.99674 * 26 25 24 46 46 H 1.09000 * 109.47478 * 59.99864 * 26 25 24 47 47 H 1.09001 * 109.47380 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.02821 * 0.02942 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1386 2.1156 -1.2618 5 6 3.5333 1.8930 -1.8505 6 7 3.6538 2.6279 -3.1121 7 6 4.8224 2.5785 -3.8243 8 1 5.6550 1.9974 -3.4562 9 6 4.9364 3.2744 -5.0200 10 7 6.0594 3.2264 -5.7047 11 14 3.4961 4.2789 -5.6570 12 1 3.5869 5.6641 -5.1295 13 1 3.5330 4.3111 -7.1412 14 1 2.2234 3.6602 -5.2069 15 6 2.3568 1.9763 1.1610 16 8 2.6917 3.1419 1.1699 17 6 2.3192 1.1933 2.4480 18 1 1.3809 0.6420 2.5107 19 6 3.4914 0.2106 2.4816 20 6 2.4241 2.1404 3.6155 21 6 3.5389 2.9471 3.7527 22 6 3.6355 3.8211 4.8195 23 6 2.6231 3.8825 5.7576 24 6 1.5063 3.0704 5.6253 25 8 0.5093 3.1286 6.5470 26 6 0.6769 4.0496 7.6266 27 6 1.4091 2.1981 4.5506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3864 1.7568 -1.9643 34 1 1.9870 3.1795 -1.0791 35 1 4.2856 2.2519 -1.1481 36 1 3.6849 0.8292 -2.0333 37 1 2.9059 3.1496 -3.4430 38 1 6.1389 3.7125 -6.5405 39 1 3.4774 -0.4026 1.5806 40 1 4.4288 0.7648 2.5294 41 1 3.4031 -0.4304 3.3588 42 1 4.3335 2.8970 3.0230 43 1 4.5053 4.4529 4.9222 44 1 2.7011 4.5620 6.5933 45 1 1.5776 3.7948 8.1852 46 1 0.7690 5.0609 7.2305 47 1 -0.1882 3.9961 8.2875 48 1 0.5409 1.5645 4.4456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754085064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:35 Heat of formation + Delta-G solvation = -54.015502 kcal Electronic energy + Delta-G solvation = -27102.466575 eV Core-core repulsion = 23350.467177 eV Total energy + Delta-G solvation = -3751.999398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69057 -40.74800 -38.60983 -37.50701 -36.54095 -34.97352 -33.67783 -31.80082 -31.65187 -30.32594 -29.33737 -28.14731 -26.12128 -25.17637 -24.05862 -23.56548 -23.37041 -22.02596 -20.27803 -19.52256 -18.60496 -18.26858 -17.29743 -17.12659 -16.91491 -16.63330 -16.45251 -16.32485 -15.68226 -15.45830 -15.31312 -14.93422 -14.74203 -14.71387 -14.52179 -14.29022 -13.92956 -13.56708 -13.47548 -13.30487 -13.15193 -13.02908 -12.96721 -12.86560 -12.58835 -12.44257 -12.33645 -12.25966 -12.10606 -11.91669 -11.85112 -11.83523 -11.67623 -11.03560 -10.72654 -9.82462 -9.71758 -9.38098 -9.12743 -8.06755 -5.42295 0.29724 0.50389 1.35581 1.40840 1.47279 1.60157 1.93290 2.37166 2.45656 2.79241 3.24270 3.46880 3.61139 3.73956 3.86327 4.04039 4.08761 4.11349 4.14221 4.16662 4.21901 4.34104 4.39056 4.39743 4.43672 4.52070 4.55680 4.56696 4.67523 4.74073 4.79101 4.89202 4.90726 4.95000 5.04692 5.06141 5.08213 5.24477 5.30582 5.40155 5.49330 5.54193 5.65587 5.70227 5.77641 6.16203 6.41458 6.45939 7.01538 7.17597 7.75456 7.96200 9.14498 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.002728 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.390481 B =10262.858509 C =10866.646184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 N -0.603 5.603 4 C 0.118 3.882 5 C 0.152 3.848 6 N -0.755 5.755 7 C -0.240 4.240 8 H 0.053 0.947 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.958 3.042 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.511 3.489 16 O -0.574 6.574 17 C -0.061 4.061 18 H 0.132 0.868 19 C -0.142 4.142 20 C -0.041 4.041 21 C -0.135 4.135 22 C -0.093 4.093 23 C -0.209 4.209 24 C 0.111 3.889 25 O -0.333 6.333 26 C 0.018 3.982 27 C -0.153 4.153 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.003 0.997 36 H 0.035 0.965 37 H 0.368 0.632 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.148 0.852 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.120 0.880 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 -7.342 27.989 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.336 5.336 4 C -0.006 4.006 5 C 0.024 3.976 6 N -0.402 5.402 7 C -0.370 4.370 8 H 0.072 0.928 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.170 1.170 15 C 0.300 3.700 16 O -0.452 6.452 17 C -0.082 4.082 18 H 0.150 0.850 19 C -0.199 4.199 20 C -0.041 4.041 21 C -0.154 4.154 22 C -0.111 4.111 23 C -0.227 4.227 24 C 0.066 3.934 25 O -0.247 6.247 26 C -0.076 4.076 27 C -0.171 4.171 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.022 0.978 36 H 0.053 0.947 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.166 0.834 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.138 0.862 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.514 -6.931 27.976 32.732 hybrid contribution 0.150 1.241 -0.903 1.542 sum -15.364 -5.690 27.073 31.645 Atomic orbital electron populations 1.22179 0.94469 1.03721 1.02136 1.22122 0.95611 0.80383 1.05359 1.47953 1.64769 1.15637 1.05196 1.21356 0.96405 0.97428 0.85431 1.20942 0.95727 0.95022 0.85872 1.42531 1.13826 1.59847 1.23971 1.18978 0.91663 1.24668 1.01740 0.92849 1.25565 1.00132 1.01976 0.97779 1.69890 1.27663 1.48258 1.17358 0.85364 0.80182 0.78800 0.77189 1.20849 1.21627 1.17020 1.21124 0.75752 0.87107 0.85986 1.90721 1.48631 1.18806 1.87091 1.20326 1.04169 0.95614 0.88096 0.85004 1.21915 0.95403 0.97966 1.04663 1.19243 0.93713 0.96687 0.94464 1.20957 0.98737 0.97640 0.98023 1.21153 0.98951 0.97565 0.93458 1.21456 0.95024 1.03328 1.02911 1.19078 0.88230 0.95753 0.90361 1.86027 1.41911 1.61086 1.35727 1.23325 1.04746 0.92000 0.87508 1.20414 1.00528 1.01871 0.94289 0.88910 0.92422 0.93232 0.89585 0.87096 0.88348 0.91800 0.97842 0.94689 0.79912 0.93138 0.90049 0.93208 0.88602 0.87501 0.84493 0.83415 0.91595 0.92248 0.86194 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.23 71.98 0.74 -1.42 16 2 C 0.09 1.38 5.53 86.38 0.48 1.86 16 3 N -0.60 -15.37 2.47 -821.81 -2.03 -17.40 16 4 C 0.12 3.75 5.57 86.38 0.48 4.23 16 5 C 0.15 6.20 6.58 86.38 0.57 6.76 16 6 N -0.76 -37.28 5.41 -343.45 -1.86 -39.14 16 7 C -0.24 -14.32 10.47 84.03 0.88 -13.44 16 8 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 9 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 10 N -0.98 -64.36 13.97 21.65 0.30 -64.06 16 11 Si 0.96 46.52 27.74 68.60 1.90 48.42 16 12 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 15 C 0.51 14.57 6.85 87.66 0.60 15.17 16 16 O -0.57 -22.10 14.29 -3.05 -0.04 -22.15 16 17 C -0.06 -1.21 2.04 -12.29 -0.03 -1.24 16 18 H 0.13 1.78 7.02 -2.39 -0.02 1.76 16 19 C -0.14 -2.32 8.66 71.98 0.62 -1.70 16 20 C -0.04 -0.95 4.52 -19.88 -0.09 -1.04 16 21 C -0.14 -3.55 7.77 22.28 0.17 -3.38 16 22 C -0.09 -2.12 10.04 22.25 0.22 -1.90 16 23 C -0.21 -4.19 9.04 22.37 0.20 -3.99 16 24 C 0.11 2.37 6.69 22.51 0.15 2.52 16 25 O -0.33 -6.30 10.50 -92.38 -0.97 -7.27 16 26 C 0.02 0.19 9.81 113.37 1.11 1.31 16 27 C -0.15 -3.27 9.61 22.37 0.21 -3.06 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 32 H 0.11 1.22 4.46 -2.39 -0.01 1.21 16 33 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 34 H 0.06 2.32 7.37 -2.39 -0.02 2.31 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.37 17.06 5.53 -92.70 -0.51 16.54 16 38 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 39 H 0.08 1.15 6.12 -2.39 -0.01 1.14 16 40 H 0.05 1.01 7.17 -2.38 -0.02 0.99 16 41 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.11 3.14 7.16 -2.91 -0.02 3.12 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 45 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 46 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 47 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.14 2.47 7.94 -2.91 -0.02 2.45 16 Total: -1.00 -81.19 385.97 4.48 -76.71 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.38 Total: 27.52 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.80 Total: -2.64 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -3.59 Total: -120.59 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.01 Total: -29.42 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -81.19 4.48 -76.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754085064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.698 kcal (2) G-P(sol) polarization free energy of solvation -81.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds