Wall clock time and date at job start Tue Mar 31 2020 12:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 2 7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4 8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5 9 9 C 1.38011 * 120.21248 * 0.54935 * 8 7 6 10 10 C 1.39569 * 119.96027 * 359.72806 * 9 8 7 11 11 C 1.47857 * 120.11314 * 180.02562 * 10 9 8 12 12 O 1.21555 * 119.99905 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00336 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00285 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.46962 * 34.99739 * 14 13 11 16 16 C 1.52997 * 109.47230 * 275.00007 * 14 13 11 17 17 C 1.52999 * 109.47199 * 154.99716 * 14 13 11 18 18 N 1.46497 * 109.47288 * 304.99938 * 17 14 13 19 19 C 1.36939 * 120.00023 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99870 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00039 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99798 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47067 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47340 * 119.99711 * 23 21 19 26 26 H 1.48498 * 109.47272 * 239.99997 * 23 21 19 27 27 C 1.38445 * 119.98665 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 29 29 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 30 30 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 32 32 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 33 33 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 34 34 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 36 36 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 37 37 H 1.07988 * 119.88252 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.89531 * 180.25450 * 8 7 6 39 39 H 1.07993 * 120.01945 * 179.74272 * 9 8 7 40 40 H 0.97009 * 120.00317 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.47065 * 59.99546 * 16 14 13 42 42 H 1.08998 * 109.47335 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.46929 * 299.99685 * 16 14 13 44 44 H 1.08995 * 109.47055 * 65.00435 * 17 14 13 45 45 H 1.09005 * 109.47390 * 185.00134 * 17 14 13 46 46 H 0.97004 * 120.00284 * 0.02562 * 18 17 14 47 47 H 0.97006 * 119.99548 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.10375 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0805 -1.4432 2.2331 7 6 3.3282 -1.9369 3.2907 8 6 3.9492 -2.5729 4.3494 9 6 5.3222 -2.7114 4.3676 10 6 6.0871 -2.2133 3.3118 11 6 7.5582 -2.3604 3.3276 12 8 8.2223 -1.9262 2.4067 13 7 8.1629 -2.9758 4.3629 14 6 9.6205 -3.1220 4.3783 15 1 10.0784 -2.2458 3.9191 16 6 10.0158 -4.3743 3.5933 17 6 10.1049 -3.2521 5.8237 18 7 9.6242 -2.1096 6.6046 19 6 9.9348 -2.0099 7.9345 20 1 10.5346 -2.7733 8.4077 21 6 9.4789 -0.9275 8.6745 22 7 8.7485 0.0031 8.0978 23 14 9.9033 -0.7911 10.4885 24 1 10.7309 -1.9562 10.8922 25 1 10.6641 0.4618 10.7261 26 1 8.6529 -0.7704 11.2893 27 6 5.4585 -1.5762 2.2415 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.7515 -0.1582 2.1370 36 1 1.6053 -1.7197 1.2953 37 1 2.2539 -1.8272 3.2842 38 1 3.3584 -2.9585 5.1672 39 1 5.8044 -3.2052 5.1982 40 1 7.6330 -3.3220 5.0981 41 1 9.6707 -4.2816 2.5635 42 1 11.1003 -4.4828 3.6043 43 1 9.5580 -5.2504 4.0524 44 1 9.7180 -4.1754 6.2548 45 1 11.1946 -3.2716 5.8415 46 1 9.0852 -1.4240 6.1797 47 1 8.4296 0.7593 8.6150 48 1 6.0451 -1.1888 1.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754251884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:57 Heat of formation + Delta-G solvation = -74.148042 kcal Electronic energy + Delta-G solvation = -26445.056944 eV Core-core repulsion = 22692.184534 eV Total energy + Delta-G solvation = -3752.872410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55691 -40.63510 -38.54518 -37.64257 -36.15753 -35.48756 -33.29523 -32.30291 -31.66880 -30.52517 -28.06704 -27.58196 -27.42681 -25.23545 -24.37730 -23.45322 -22.28990 -21.50202 -20.99947 -19.75717 -19.08205 -17.77527 -17.45882 -17.22504 -16.94821 -16.63286 -16.55015 -16.02370 -15.44755 -15.42900 -15.21331 -15.12556 -14.87038 -14.71786 -14.14637 -13.94685 -13.69856 -13.66197 -13.58715 -13.29438 -13.07919 -13.01853 -12.83420 -12.81445 -12.63185 -12.30771 -12.17758 -12.09710 -12.03435 -11.89738 -11.70114 -11.59882 -11.52593 -11.09544 -10.94452 -10.24154 -9.97131 -9.29049 -9.01281 -7.93438 -5.23670 -0.23763 0.36908 1.48559 1.49794 1.59577 1.80049 1.95361 2.35148 2.56716 2.81567 3.40703 3.59196 3.72913 3.80973 3.84583 3.89819 4.02117 4.04554 4.10699 4.16270 4.25623 4.29619 4.44443 4.48024 4.51499 4.55819 4.67118 4.78612 4.79043 4.85267 4.87666 4.93467 4.97565 5.01242 5.09751 5.17290 5.20611 5.26623 5.29959 5.34282 5.37379 5.39124 5.50899 5.53723 5.63979 6.26702 6.39392 6.51351 7.15621 7.33876 8.07045 8.30852 9.29693 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.002656 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.624579 B =10538.791095 C =11741.221932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.149 4.149 4 C 0.053 3.947 5 O -0.328 6.328 6 C 0.117 3.883 7 C -0.177 4.177 8 C -0.080 4.080 9 C -0.123 4.123 10 C -0.108 4.108 11 C 0.554 3.446 12 O -0.581 6.581 13 N -0.697 5.697 14 C 0.138 3.862 15 H 0.059 0.941 16 C -0.146 4.146 17 C 0.145 3.855 18 N -0.745 5.745 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.264 1.264 25 H -0.299 1.299 26 H -0.292 1.292 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.410 0.590 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 -7.092 -13.682 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.021 4.021 5 O -0.242 6.242 6 C 0.071 3.929 7 C -0.195 4.195 8 C -0.098 4.098 9 C -0.142 4.142 10 C -0.111 4.111 11 C 0.343 3.657 12 O -0.463 6.463 13 N -0.348 5.348 14 C 0.033 3.967 15 H 0.078 0.922 16 C -0.205 4.205 17 C 0.019 3.981 18 N -0.388 5.388 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.188 1.188 25 H -0.226 1.226 26 H -0.219 1.219 27 C -0.137 4.137 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.247 0.753 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.205 0.795 47 H 0.058 0.942 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.471 -6.797 -14.327 23.595 hybrid contribution 0.087 0.704 1.169 1.367 sum -17.385 -6.093 -13.158 22.638 Atomic orbital electron populations 1.21759 0.91916 1.02984 1.03169 1.21158 0.97168 0.96278 0.96651 1.21839 1.00711 0.95682 1.02438 1.23245 0.76917 1.01666 1.00301 1.86068 1.23595 1.73372 1.41162 1.18818 0.91342 0.94230 0.88466 1.21757 1.01680 1.01878 0.94218 1.21284 0.93658 0.96530 0.98313 1.21472 0.95118 1.00322 0.97279 1.19645 0.92031 1.02552 0.96879 1.18554 0.88078 0.77087 0.82003 1.90705 1.67005 1.50865 1.37736 1.45861 1.08258 1.58127 1.22583 1.21186 0.79658 0.99453 0.96420 0.92248 1.22007 1.02910 0.96210 0.99324 1.21148 0.97510 0.90865 0.88598 1.42573 1.63255 1.25467 1.07516 1.19683 1.25830 1.05121 0.86752 0.90094 1.25580 1.01310 0.97398 1.02479 1.69854 1.42026 1.13274 1.36761 0.85066 0.77073 0.77326 0.80213 1.18803 1.22638 1.21949 1.20378 0.92503 1.01587 0.99280 0.91761 0.91041 0.91437 0.90606 0.91413 0.92368 0.93962 0.90991 0.90251 0.81963 0.81715 0.84335 0.75300 0.93127 0.89830 0.90607 0.93778 0.94109 0.79498 0.94162 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.19 71.98 0.66 -0.51 16 2 C -0.09 -1.24 3.16 -10.79 -0.03 -1.28 16 3 C -0.15 -2.26 9.09 71.98 0.65 -1.60 16 4 C 0.05 0.81 4.12 71.98 0.30 1.11 16 5 O -0.33 -7.84 9.67 -92.57 -0.89 -8.74 16 6 C 0.12 3.04 6.68 22.47 0.15 3.19 16 7 C -0.18 -3.58 9.03 22.42 0.20 -3.38 16 8 C -0.08 -1.66 10.03 22.22 0.22 -1.44 16 9 C -0.12 -3.24 9.54 22.54 0.21 -3.03 16 10 C -0.11 -3.50 5.87 -20.10 -0.12 -3.62 16 11 C 0.55 20.76 7.74 86.79 0.67 21.43 16 12 O -0.58 -25.54 16.01 -3.89 -0.06 -25.60 16 13 N -0.70 -23.86 4.47 -445.40 -1.99 -25.85 16 14 C 0.14 4.76 2.73 44.99 0.12 4.88 16 15 H 0.06 2.41 7.58 -2.38 -0.02 2.39 16 16 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 17 C 0.15 5.53 5.82 86.38 0.50 6.04 16 18 N -0.74 -37.07 5.43 -343.45 -1.87 -38.93 16 19 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 23 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C -0.12 -3.75 9.53 22.63 0.22 -3.54 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.04 0.82 7.82 -2.39 -0.02 0.81 16 35 H 0.07 0.97 7.65 -2.39 -0.02 0.96 16 36 H 0.08 0.93 7.67 -2.39 -0.02 0.91 16 37 H 0.16 2.13 6.28 -2.92 -0.02 2.12 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.14 3.35 6.40 -2.91 -0.02 3.33 16 40 H 0.41 12.86 6.63 -92.70 -0.61 12.24 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.37 20.41 7.33 -92.71 -0.68 19.73 16 47 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 48 H 0.12 4.23 7.65 -2.91 -0.02 4.21 16 Total: -1.00 -72.35 395.78 2.91 -69.43 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.34 Total: 42.22 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.75 Total: -1.11 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -3.57 Total: -123.82 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.96 Total: -34.34 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.35 2.91 -69.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754251884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.714 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds