Wall clock time and date at job start Tue Mar 31 2020 12:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00269 * 2 1 4 4 C 1.50708 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00002 * 270.02423 * 4 3 2 6 6 C 1.38210 * 119.99762 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.00202 * 0.09093 * 6 5 4 8 8 C 1.38207 * 119.99764 * 359.85905 * 7 6 5 9 9 C 1.50699 * 120.00008 * 180.36995 * 8 7 6 10 10 C 1.50696 * 109.47206 * 269.72590 * 9 8 7 11 11 O 1.21280 * 119.99885 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00123 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47130 * 34.99675 * 13 12 10 15 15 C 1.52997 * 109.46974 * 274.99772 * 13 12 10 16 16 C 1.53000 * 109.47168 * 154.99761 * 13 12 10 17 17 N 1.46505 * 109.47286 * 304.99920 * 16 13 12 18 18 C 1.46496 * 119.99915 * 270.00237 * 17 16 13 19 19 C 1.36934 * 120.00060 * 89.99743 * 17 16 13 20 20 H 1.08000 * 119.99824 * 22.03044 * 19 17 16 21 21 C 1.38809 * 120.00378 * 202.03037 * 19 17 16 22 22 N 1.31624 * 119.99747 * 11.44177 * 21 19 17 23 23 Si 1.86801 * 120.00199 * 191.44384 * 21 19 17 24 24 H 1.48492 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46892 * 120.00159 * 23 21 19 26 26 H 1.48498 * 109.46932 * 239.99481 * 23 21 19 27 27 C 1.38215 * 119.99364 * 90.00200 * 4 3 2 28 28 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46799 * 300.00441 * 1 2 3 30 30 H 1.08998 * 109.46957 * 59.99303 * 1 2 3 31 31 H 1.08999 * 109.47345 * 60.00135 * 3 2 1 32 32 H 1.09003 * 109.47413 * 299.99980 * 3 2 1 33 33 H 1.07998 * 120.00555 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.00169 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.00208 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47372 * 29.72779 * 9 8 7 37 37 H 1.09001 * 109.47036 * 149.72781 * 9 8 7 38 38 H 0.97004 * 119.99914 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47113 * 299.99913 * 15 13 12 40 40 H 1.08998 * 109.47012 * 60.00285 * 15 13 12 41 41 H 1.09004 * 109.47119 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.47227 * 64.99867 * 16 13 12 43 43 H 1.09004 * 109.47407 * 185.00004 * 16 13 12 44 44 H 1.08999 * 109.47601 * 94.03769 * 18 17 16 45 45 H 1.08997 * 109.47069 * 214.04082 * 18 17 16 46 46 H 1.09004 * 109.47224 * 334.04197 * 18 17 16 47 47 H 0.97001 * 119.99907 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.00734 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5127 1.1863 0.0006 5 6 4.2012 1.1314 1.1982 6 6 5.5790 1.0217 1.1987 7 6 6.2687 0.9687 0.0017 8 6 5.5803 1.0225 -1.1955 9 6 6.3313 0.9564 -2.5003 10 6 6.6936 2.3507 -2.9427 11 8 6.3737 3.3042 -2.2648 12 7 7.3730 2.5381 -4.0915 13 6 7.7256 3.8935 -4.5213 14 1 7.9490 4.5052 -3.6472 15 6 6.5517 4.5074 -5.2868 16 6 8.9541 3.8366 -5.4315 17 7 10.0425 3.1414 -4.7398 18 6 10.9902 3.8986 -3.9185 19 6 10.1740 1.7838 -4.8611 20 1 9.7367 1.2722 -5.7058 21 6 10.8692 1.0650 -3.8984 22 7 11.2066 1.6403 -2.7636 23 14 11.3261 -0.7187 -4.2132 24 1 10.8347 -1.1263 -5.5539 25 1 12.8027 -0.8682 -4.1602 26 1 10.7039 -1.5796 -3.1755 27 6 4.2019 1.1315 -1.1961 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.6626 1.1743 2.1333 34 1 6.1170 0.9792 2.1342 35 1 7.3453 0.8834 0.0021 36 1 7.2404 0.3699 -2.3670 37 1 5.7036 0.4866 -3.2575 38 1 7.6291 1.7754 -4.6335 39 1 6.3283 3.8957 -6.1608 40 1 5.6765 4.5480 -4.6383 41 1 6.8142 5.5157 -5.6069 42 1 8.7037 3.2999 -6.3466 43 1 9.2699 4.8500 -5.6794 44 1 10.6566 3.8937 -2.8808 45 1 11.9765 3.4395 -3.9852 46 1 11.0426 4.9262 -4.2783 47 1 11.6921 1.1380 -2.0907 48 1 3.6640 1.1736 -2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:43 Heat of formation + Delta-G solvation = -40.363716 kcal Electronic energy + Delta-G solvation = -27342.005528 eV Core-core repulsion = 23590.598116 eV Total energy + Delta-G solvation = -3751.407412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.75168 -38.76161 -37.61500 -36.24906 -33.94039 -32.87042 -31.62735 -31.25355 -30.05650 -27.59570 -27.04195 -26.15862 -25.60993 -25.38048 -22.35838 -21.79589 -21.06136 -19.94742 -19.49455 -16.91359 -16.63947 -16.45107 -16.21710 -16.13024 -15.60415 -15.28637 -15.08212 -14.83390 -14.23360 -13.96638 -13.72318 -13.35377 -13.14754 -12.97814 -12.74784 -12.59280 -12.46384 -12.30825 -12.14914 -11.96027 -11.60627 -11.48855 -11.36836 -11.25799 -10.89915 -10.87536 -10.76595 -10.70270 -10.39112 -10.23415 -10.03779 -9.88809 -9.84595 -9.20078 -8.65908 -8.59805 -8.44031 -8.19424 -6.79746 -5.75888 -3.21980 1.44910 1.58344 3.31395 3.38709 3.39986 3.41619 3.55946 3.95375 4.26930 4.43991 4.78316 4.81060 5.02713 5.09623 5.10932 5.21297 5.25974 5.31373 5.33573 5.41539 5.47122 5.51563 5.60074 5.68422 5.71648 5.80089 5.90295 5.93256 6.01202 6.17749 6.19573 6.25960 6.27508 6.46845 6.54736 6.63856 6.67421 6.75352 6.84035 6.91493 6.94269 7.17900 7.35778 7.38619 7.68977 7.78754 8.33847 8.38274 9.03658 9.18520 9.82637 10.32848 11.28121 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.003372 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.238052 B = 8301.005225 C = 9231.120974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.098 4.098 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.054 4.054 9 C -0.106 4.106 10 C 0.520 3.480 11 O -0.556 6.556 12 N -0.689 5.689 13 C 0.120 3.880 14 H 0.075 0.925 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.599 5.599 18 C 0.164 3.836 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.896 3.104 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.290 1.290 27 C -0.085 4.085 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.045 0.955 46 H -0.005 1.005 47 H 0.251 0.749 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.359 -0.781 2.517 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.098 4.098 5 C -0.123 4.123 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.054 4.054 9 C -0.146 4.146 10 C 0.306 3.694 11 O -0.435 6.435 12 N -0.339 5.339 13 C 0.011 3.989 14 H 0.093 0.907 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.321 5.321 18 C 0.020 3.980 19 C -0.384 4.384 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.103 4.103 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.239 0.761 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.013 0.987 47 H 0.062 0.938 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.327 -0.322 3.114 16.624 hybrid contribution 0.319 -1.129 -0.203 1.191 sum -16.008 -1.451 2.912 16.335 Atomic orbital electron populations 1.22744 0.81301 1.02693 0.99904 1.87988 1.19332 1.27757 1.95380 1.21329 0.90206 0.84772 1.00706 1.19397 0.93461 1.03353 0.93628 1.20912 0.94328 1.00029 0.97036 1.21055 0.94074 1.00899 0.97988 1.21147 1.00219 0.97827 0.91913 1.19325 0.93160 0.98807 0.94157 1.20694 1.01929 0.96630 0.95374 1.20185 0.77984 0.90341 0.80888 1.90638 1.55382 1.43086 1.54362 1.45709 1.55266 1.09546 1.23361 1.21768 0.94865 0.83432 0.98789 0.90709 1.22153 0.99256 1.00306 1.00083 1.21186 0.87218 0.96335 0.93910 1.43900 1.27455 1.04166 1.56580 1.20789 0.93500 0.89679 0.94049 1.19119 1.32695 0.82757 1.03849 0.91541 1.24997 1.01641 0.97536 0.95155 1.70095 1.42691 1.35623 1.05961 0.86325 0.78270 0.85287 0.77509 1.20329 1.21686 1.21689 1.20792 0.93516 0.98754 0.97237 0.89664 0.94165 0.94088 0.92595 0.92503 0.86447 0.86032 0.85722 0.87545 0.88677 0.76136 0.93089 0.93033 0.92409 0.93391 0.93100 0.95454 0.93651 0.98652 0.93830 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.66 10.69 -35.23 -0.38 -5.04 16 3 C 0.11 1.21 6.06 36.01 0.22 1.43 16 4 C -0.10 -1.38 5.51 -104.62 -0.58 -1.95 16 5 C -0.10 -1.42 9.70 -39.59 -0.38 -1.81 16 6 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 7 C -0.09 -1.52 9.70 -39.58 -0.38 -1.91 16 8 C -0.05 -0.89 4.37 -104.62 -0.46 -1.35 16 9 C -0.11 -1.73 5.83 -29.04 -0.17 -1.90 16 10 C 0.52 10.17 7.79 -10.98 -0.09 10.08 16 11 O -0.56 -12.61 15.70 5.56 0.09 -12.52 16 12 N -0.69 -13.04 4.49 -53.81 -0.24 -13.28 16 13 C 0.12 2.23 2.88 -67.93 -0.20 2.03 16 14 H 0.07 1.64 7.58 -51.93 -0.39 1.24 16 15 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 16 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 17 N -0.60 -14.10 2.82 -181.12 -0.51 -14.61 16 18 C 0.16 4.00 9.01 59.84 0.54 4.54 16 19 C -0.25 -6.34 8.02 -15.06 -0.12 -6.46 16 20 H 0.07 1.60 7.84 -52.49 -0.41 1.19 16 21 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 22 N -0.90 -25.00 10.57 55.49 0.59 -24.42 16 23 Si 0.90 20.56 29.57 -169.99 -5.03 15.53 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 C -0.08 -1.28 9.36 -39.58 -0.37 -1.65 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.11 1.78 8.08 -51.93 -0.42 1.36 16 37 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 38 H 0.40 7.42 7.40 -40.82 -0.30 7.11 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 43 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 44 H 0.03 0.73 7.44 -51.93 -0.39 0.35 16 45 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 46 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -31.46 397.30 -8.66 -40.12 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.14 Total: 7.27 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.03 Total: 0.95 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.17 Total: -52.30 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.29 Total: -17.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.46 -8.66 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.239 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds