Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.00102 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46680 * 34.99949 * 12 11 9 14 14 C 1.52995 * 109.46662 * 274.99892 * 12 11 9 15 15 C 1.52998 * 109.46792 * 154.99920 * 12 11 9 16 16 H 1.08996 * 109.47088 * 60.00169 * 15 12 11 17 17 C 1.52991 * 109.47609 * 299.99820 * 15 12 11 18 18 N 1.46500 * 109.46935 * 179.97438 * 15 12 11 19 19 C 1.36933 * 120.00568 * 204.99939 * 18 15 12 20 20 H 1.08006 * 119.99519 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00649 * 180.02562 * 19 18 15 22 22 N 1.31622 * 120.00387 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99633 * 359.97438 * 21 19 18 24 24 H 1.48510 * 109.46741 * 90.00323 * 23 21 19 25 25 H 1.48500 * 109.47143 * 209.99899 * 23 21 19 26 26 H 1.48495 * 109.47307 * 330.00408 * 23 21 19 27 27 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 28 28 C 1.38144 * 120.05633 * 359.45047 * 27 6 5 29 29 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 31 31 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 32 32 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 35 35 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 36 36 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 37 37 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 38 38 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47402 * 60.00125 * 14 12 11 40 40 H 1.09004 * 109.46813 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47619 * 299.99482 * 14 12 11 42 42 H 1.09000 * 109.47312 * 59.99780 * 17 15 12 43 43 H 1.08998 * 109.47517 * 180.02562 * 17 15 12 44 44 H 1.09007 * 109.47264 * 300.00730 * 17 15 12 45 45 H 0.97003 * 119.99983 * 25.00288 * 18 15 12 46 46 H 0.97001 * 119.99517 * 179.97438 * 22 21 19 47 47 H 1.07999 * 119.97190 * 179.70663 * 27 6 5 48 48 H 1.08001 * 120.03140 * 180.25189 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2171 5.4745 -1.4393 9 6 4.9007 6.8175 -1.4382 10 8 5.1766 7.3566 -0.3874 11 7 5.2056 7.4195 -2.6049 12 6 5.8707 8.7248 -2.6037 13 1 6.5616 8.7797 -1.7625 14 6 4.8219 9.8313 -2.4756 15 6 6.6442 8.9041 -3.9116 16 1 5.9533 8.8491 -4.7527 17 6 7.6929 7.7976 -4.0398 18 7 7.3088 10.2097 -3.9107 19 6 7.6185 10.8212 -5.0961 20 1 7.3723 10.3412 -6.0318 21 6 8.2487 12.0580 -5.0953 22 7 8.5458 12.6460 -6.2348 23 14 8.6738 12.8886 -3.4770 24 1 10.0340 12.4730 -3.0497 25 1 8.6391 14.3627 -3.6530 26 1 7.6864 12.4902 -2.4418 27 6 1.9212 3.6047 0.0080 28 6 1.2916 2.3751 0.0012 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.0208 0.3799 -0.0014 33 1 5.1346 2.5749 -0.0008 34 1 3.3584 5.7457 0.5177 35 1 4.9444 4.9376 0.5160 36 1 4.8448 4.7472 -1.9542 37 1 3.2590 5.5554 -1.9527 38 1 4.9846 6.9884 -3.4453 39 1 4.2709 9.7036 -1.5439 40 1 5.3168 10.8026 -2.4752 41 1 4.1311 9.7764 -3.3168 42 1 7.1981 6.8264 -4.0405 43 1 8.2442 7.9256 -4.9713 44 1 8.3839 7.8525 -3.1984 45 1 7.5296 10.6410 -3.0704 46 1 8.9859 13.5105 -6.2341 47 1 1.3343 4.5114 0.0140 48 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755266914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -50.340758 kcal Electronic energy + Delta-G solvation = -25969.557712 eV Core-core repulsion = 22217.717664 eV Total energy + Delta-G solvation = -3751.840049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53723 -39.79501 -38.10717 -36.91745 -34.03301 -33.73549 -31.83314 -31.42924 -30.22242 -29.12146 -28.90047 -27.64909 -24.72629 -23.87853 -22.99605 -22.44865 -21.16760 -20.29808 -19.91078 -18.52929 -17.89576 -17.08324 -16.68772 -16.13823 -15.82366 -15.54240 -15.39888 -14.63467 -14.53521 -14.31174 -14.01345 -13.88156 -13.71925 -13.58652 -13.15226 -12.96268 -12.92335 -12.53026 -12.42232 -12.32716 -12.11626 -11.84873 -11.64226 -11.38931 -11.35070 -11.26775 -11.09784 -11.00904 -10.92059 -10.77780 -10.30706 -9.95168 -9.75094 -9.59563 -9.34068 -9.06209 -8.81664 -8.41370 -7.31611 -5.79679 -3.15978 1.00287 1.06693 2.73905 2.87970 3.22945 3.37427 3.41224 3.45094 3.47183 4.40538 4.49705 4.53931 4.57478 4.65859 4.70095 4.82716 4.88915 4.99591 5.02274 5.08405 5.13780 5.20365 5.31583 5.38110 5.41958 5.45114 5.58467 5.64215 5.71973 5.76195 5.90659 5.98019 6.00241 6.01983 6.10629 6.25625 6.28940 6.36254 6.38573 6.42718 6.53046 6.67670 6.82271 6.92721 7.01023 7.64344 7.94683 8.34378 8.38920 9.16436 9.89087 10.08099 11.38301 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.001894 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.349600 B =14777.907985 C =14940.746721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.116 4.116 7 C -0.060 4.060 8 C -0.135 4.135 9 C 0.510 3.490 10 O -0.545 6.545 11 N -0.718 5.718 12 C 0.132 3.868 13 H 0.083 0.917 14 C -0.154 4.154 15 C 0.173 3.827 16 H 0.059 0.941 17 C -0.164 4.164 18 N -0.742 5.742 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.076 4.076 28 C -0.206 4.206 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.125 0.875 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.583 -24.796 12.466 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.027 3.973 13 H 0.101 0.899 14 C -0.212 4.212 15 C 0.063 3.937 16 H 0.077 0.923 17 C -0.224 4.224 18 N -0.386 5.386 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.094 4.094 28 C -0.225 4.225 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.143 0.857 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.273 -24.506 12.963 32.147 hybrid contribution -0.008 0.612 0.560 0.830 sum -16.281 -23.894 13.523 31.920 Atomic orbital electron populations 1.23050 0.78387 1.03934 1.01394 1.86064 1.21397 1.27073 1.88815 1.19058 0.92429 0.84120 0.96949 1.20438 0.91346 0.98722 1.06303 1.20925 1.00024 0.90926 0.97502 1.19859 0.93535 0.95292 1.02977 1.20262 1.01473 0.92636 0.95444 1.21670 1.02003 0.94729 0.99120 1.20639 0.78855 0.86976 0.83868 1.90702 1.53836 1.66445 1.31261 1.46081 1.60952 1.21491 1.08392 1.21329 0.94318 0.81477 1.00159 0.89903 1.22061 0.98940 0.99355 1.00859 1.20361 0.92741 0.86712 0.93870 0.92327 1.22408 1.00234 0.97593 1.02186 1.42651 1.71757 1.18632 1.05553 1.19016 1.32165 1.00522 0.85566 0.89154 1.24647 1.00737 0.97305 0.96235 1.69698 1.46995 1.17396 1.23926 0.86592 0.78549 0.79164 0.84470 1.21063 1.21725 1.20193 1.20881 0.94040 0.97068 0.97400 1.21227 0.99985 0.92364 1.08911 0.88260 0.92666 0.92601 0.85234 0.85156 0.90270 0.90152 0.88823 0.88953 0.76716 0.93270 0.90796 0.92667 0.94217 0.92172 0.93544 0.80477 0.93030 0.85668 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.72 10.50 -19.43 -0.20 -2.92 16 3 C 0.12 1.06 6.69 -39.21 -0.26 0.80 16 4 C -0.15 -1.28 9.99 -39.43 -0.39 -1.68 16 5 C -0.08 -0.62 9.69 -39.61 -0.38 -1.01 16 6 C -0.12 -0.99 5.13 -104.60 -0.54 -1.53 16 7 C -0.06 -0.55 4.63 -27.88 -0.13 -0.68 16 8 C -0.14 -1.17 5.68 -27.89 -0.16 -1.33 16 9 C 0.51 6.48 7.79 -10.99 -0.09 6.39 16 10 O -0.54 -9.11 15.65 5.55 0.09 -9.02 16 11 N -0.72 -8.91 4.38 -53.81 -0.24 -9.15 16 12 C 0.13 2.10 2.21 -67.93 -0.15 1.95 16 13 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -2.50 9.33 37.15 0.35 -2.15 16 15 C 0.17 3.12 2.52 -67.94 -0.17 2.95 16 16 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 17 C -0.16 -2.74 9.33 37.15 0.35 -2.39 16 18 N -0.74 -16.88 4.23 -53.43 -0.23 -17.10 16 19 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 20 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 23 Si 0.88 21.96 27.73 -169.99 -4.71 17.25 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 27 C -0.08 -0.61 9.69 -39.61 -0.38 -0.99 16 28 C -0.21 -1.63 9.04 -39.43 -0.36 -1.98 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.21 7.66 -51.93 -0.40 -0.18 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.91 8.39 -40.82 -0.34 3.57 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 45 H 0.36 8.28 5.44 -40.82 -0.22 8.06 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -33.56 394.27 -8.09 -41.65 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.93 Total: 8.63 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.58 Total: -7.20 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.31 Total: -54.33 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.12 Total: -11.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.56 -8.09 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.689 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds