Wall clock time and date at job start Tue Mar 31 2020 12:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.90101 * 2 1 4 4 N 1.40088 * 108.20760 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.03497 * 180.02562 * 4 3 2 6 6 C 1.34944 * 107.92196 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.12609 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74924 * 359.75810 * 6 4 3 9 9 C 1.50697 * 126.04207 * 180.27260 * 8 6 4 10 10 H 1.09003 * 109.47331 * 0.16428 * 9 8 6 11 11 C 1.52994 * 109.47162 * 240.16412 * 9 8 6 12 12 C 1.50702 * 109.47252 * 120.16128 * 9 8 6 13 13 O 1.21290 * 119.99715 * 7.93656 * 12 9 8 14 14 N 1.34769 * 120.00307 * 187.94147 * 12 9 8 15 15 C 1.46930 * 120.63108 * 185.22519 * 14 12 9 16 16 C 1.52761 * 109.00612 * 233.57697 * 15 14 12 17 17 C 1.53039 * 109.38600 * 305.58832 * 16 15 14 18 18 N 1.46502 * 109.45994 * 181.25698 * 17 16 15 19 19 C 1.36938 * 119.99819 * 84.93334 * 18 17 16 20 20 H 1.08006 * 119.99862 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00283 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00189 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99884 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47300 * 89.99636 * 23 21 19 25 25 H 1.48497 * 109.47295 * 210.00025 * 23 21 19 26 26 H 1.48500 * 109.46803 * 329.99817 * 23 21 19 27 27 C 1.53050 * 109.53760 * 61.24069 * 17 16 15 28 28 C 1.46926 * 120.63212 * 5.49711 * 14 12 9 29 29 H 1.09000 * 109.47137 * 90.02493 * 1 2 3 30 30 H 1.09000 * 109.47145 * 210.02705 * 1 2 3 31 31 H 1.09009 * 109.46947 * 330.02557 * 1 2 3 32 32 H 1.08994 * 109.47230 * 89.97805 * 7 6 4 33 33 H 1.09004 * 109.47255 * 209.98166 * 7 6 4 34 34 H 1.09005 * 109.46637 * 329.97846 * 7 6 4 35 35 H 1.09002 * 109.47192 * 174.48179 * 11 9 8 36 36 H 1.08998 * 109.46749 * 294.47411 * 11 9 8 37 37 H 1.08995 * 109.47275 * 54.47404 * 11 9 8 38 38 H 1.08993 * 109.58596 * 353.41179 * 15 14 12 39 39 H 1.09004 * 109.58501 * 113.84428 * 15 14 12 40 40 H 1.09001 * 109.56521 * 185.55062 * 16 15 14 41 41 H 1.08997 * 109.35939 * 65.49972 * 16 15 14 42 42 H 1.09001 * 109.45111 * 301.22736 * 17 16 15 43 43 H 0.96995 * 120.00417 * 264.93306 * 18 17 16 44 44 H 0.96999 * 119.99929 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.49536 * 178.68250 * 27 17 16 46 46 H 1.08995 * 109.49518 * 58.58414 * 27 17 16 47 47 H 1.08998 * 109.59134 * 246.16272 * 28 14 12 48 48 H 1.09000 * 109.58399 * 6.44381 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0015 7 6 4.8350 -1.5990 0.0030 8 6 2.3270 -1.1331 0.0070 9 6 1.8598 -2.5657 0.0156 10 1 2.7241 -3.2298 0.0199 11 6 1.0162 -2.8346 -1.2321 12 6 1.0284 -2.8156 1.2475 13 8 0.7137 -1.8895 1.9648 14 7 0.6347 -4.0679 1.5523 15 6 -0.2696 -4.3139 2.6839 16 6 0.3611 -5.3541 3.6078 17 6 0.7117 -6.6054 2.7994 18 7 1.2891 -7.6156 3.6896 19 6 0.4694 -8.4576 4.3926 20 1 -0.6028 -8.3773 4.2905 21 6 1.0165 -9.4152 5.2356 22 7 0.2287 -10.2248 5.9110 23 14 2.8710 -9.5546 5.4117 24 1 3.3307 -8.6769 6.5177 25 1 3.2352 -10.9624 5.7129 26 1 3.5214 -9.1355 4.1442 27 6 1.7261 -6.2446 1.7118 28 6 1.1064 -5.2139 0.7629 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5135 32 1 5.1289 -1.8111 1.0309 33 1 4.6078 -2.5336 -0.5101 34 1 5.6514 -1.0915 -0.5111 35 1 0.7602 -3.8932 -1.2765 36 1 0.1028 -2.2416 -1.1877 37 1 1.5845 -2.5606 -2.1209 38 1 -0.4271 -3.3862 3.2340 39 1 -1.2241 -4.6885 2.3141 40 1 -0.3435 -5.6164 4.3970 41 1 1.2674 -4.9416 4.0510 42 1 -0.1913 -7.0031 2.3362 43 1 2.2521 -7.6880 3.7810 44 1 0.6110 -10.8936 6.5003 45 1 1.9930 -7.1407 1.1515 46 1 2.6195 -5.8236 2.1729 47 1 0.2664 -5.6634 0.2333 48 1 1.8546 -4.8794 0.0443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997106921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:42 Heat of formation + Delta-G solvation = 44.217367 kcal Electronic energy + Delta-G solvation = -27991.402964 eV Core-core repulsion = 24275.956014 eV Total energy + Delta-G solvation = -3715.446950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68401 -40.02800 -37.50111 -34.77182 -34.40975 -33.47975 -32.02787 -31.07192 -30.34303 -29.62733 -28.13047 -26.97609 -25.45079 -24.10492 -22.93143 -22.20200 -20.71449 -20.26648 -19.57548 -18.73301 -17.77160 -17.26074 -16.84767 -15.75589 -15.46063 -15.10843 -14.83645 -14.39521 -14.10137 -13.99871 -13.83867 -13.68820 -13.50888 -13.23473 -13.16870 -12.99914 -12.65362 -12.59659 -12.51982 -12.41963 -12.17721 -12.03337 -11.75269 -11.68841 -11.54330 -11.03722 -11.00041 -10.87985 -10.51985 -10.46453 -10.29908 -9.96493 -9.61866 -9.51431 -9.31397 -8.94542 -8.52849 -8.46510 -7.30501 -5.79802 -3.15652 1.70200 2.54816 2.70586 2.74667 3.17765 3.34354 3.37698 3.43092 4.38373 4.48143 4.50120 4.56264 4.76014 4.82203 4.94209 4.99870 5.03934 5.11604 5.20099 5.29014 5.30332 5.35881 5.47929 5.51481 5.53328 5.55687 5.59217 5.63604 5.69100 5.81925 5.84005 5.88700 5.97503 5.98875 6.04714 6.13673 6.13781 6.25912 6.46729 6.52107 6.60746 6.85644 6.95636 7.14151 7.53654 7.60610 7.96094 8.30462 8.39278 9.17525 9.90182 10.09704 11.38511 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.002974 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.189219 B = 9413.264369 C = 9931.971781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.117 3.883 3 N -0.304 5.304 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.091 3.909 7 C -0.096 4.096 8 C -0.215 4.215 9 C -0.030 4.030 10 H 0.097 0.903 11 C -0.144 4.144 12 C 0.518 3.482 13 O -0.533 6.533 14 N -0.607 5.607 15 C 0.113 3.887 16 C -0.150 4.150 17 C 0.184 3.816 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.145 4.145 28 C 0.110 3.890 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.477 17.848 -17.952 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.127 5.127 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.037 4.037 7 C -0.154 4.154 8 C -0.227 4.227 9 C -0.052 4.052 10 H 0.115 0.885 11 C -0.202 4.202 12 C 0.306 3.694 13 O -0.410 6.410 14 N -0.341 5.341 15 C -0.010 4.010 16 C -0.191 4.191 17 C 0.074 3.926 18 N -0.391 5.391 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.184 4.184 28 C -0.014 4.014 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.193 0.807 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.116 19.457 -17.460 26.848 hybrid contribution 1.919 -0.850 0.428 2.142 sum 8.035 18.607 -17.032 26.474 Atomic orbital electron populations 1.20393 0.86917 1.04556 1.01915 1.22042 0.96851 0.89659 0.96401 1.77288 0.86294 1.22350 1.26776 1.46059 1.07401 1.04575 1.60712 0.72085 1.20798 0.96649 0.85177 1.01115 1.20504 0.92866 0.98370 1.03683 1.19085 0.91168 0.94683 1.17740 1.19508 0.98623 0.93130 0.93986 0.88512 1.21880 1.00173 1.02310 0.95836 1.20528 0.80199 0.82251 0.86470 1.90667 1.56572 1.42449 1.51290 1.48156 1.48120 1.05950 1.31834 1.21589 0.91866 1.00229 0.87276 1.22537 1.01316 0.96260 0.98983 1.20139 0.94934 0.88231 0.89253 1.42790 1.04780 1.38960 1.52526 1.19068 0.91500 1.08930 1.17842 0.89166 1.24675 0.97061 0.98197 0.99195 1.69697 1.33505 1.23024 1.31903 0.86552 0.87172 0.77050 0.77738 1.21162 1.21778 1.20364 1.22264 0.99630 0.98439 0.98023 1.21832 0.99231 0.86673 0.93638 0.91266 0.89037 0.91260 0.89963 0.89489 0.90992 0.91436 0.91717 0.91534 0.89594 0.91713 0.90318 0.92503 0.92531 0.80715 0.93047 0.90436 0.91938 0.91025 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 8.57 36.01 0.31 -0.60 16 2 C 0.12 1.52 6.52 -82.41 -0.54 0.99 16 3 N -0.30 -4.07 12.70 33.67 0.43 -3.64 16 4 N -0.48 -4.93 7.36 33.48 0.25 -4.68 16 5 H 0.44 3.00 8.96 -182.61 -1.64 1.37 16 6 C 0.09 0.91 7.21 -82.26 -0.59 0.31 16 7 C -0.10 -0.59 10.06 36.01 0.36 -0.23 16 8 C -0.22 -2.49 4.45 -105.05 -0.47 -2.96 16 9 C -0.03 -0.30 2.03 -92.93 -0.19 -0.49 16 10 H 0.10 0.80 5.68 -51.93 -0.29 0.51 16 11 C -0.14 -1.14 8.67 37.15 0.32 -0.82 16 12 C 0.52 6.78 6.27 -10.99 -0.07 6.71 16 13 O -0.53 -8.78 12.70 5.55 0.07 -8.71 16 14 N -0.61 -7.60 2.98 -173.03 -0.52 -8.12 16 15 C 0.11 1.59 6.41 -3.93 -0.03 1.57 16 16 C -0.15 -2.51 5.64 -26.83 -0.15 -2.67 16 17 C 0.18 3.23 2.73 -67.88 -0.19 3.05 16 18 N -0.75 -16.85 4.93 -53.38 -0.26 -17.11 16 19 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 20 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -28.90 13.97 55.49 0.78 -28.12 16 23 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 27 C -0.14 -1.94 5.55 -26.61 -0.15 -2.09 16 28 C 0.11 1.14 5.11 -3.71 -0.02 1.12 16 29 H 0.07 0.63 8.03 -51.93 -0.42 0.22 16 30 H 0.09 1.14 4.97 -51.93 -0.26 0.88 16 31 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.45 7.16 -51.93 -0.37 0.07 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.45 6.18 -51.93 -0.32 0.13 16 36 H 0.06 0.55 6.36 -51.93 -0.33 0.22 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.65 5.01 -51.93 -0.26 0.39 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -35.00 369.09 -8.78 -43.78 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.72 Total: 6.92 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.64 Total: -2.86 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.67 Total: -61.67 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.00 -8.78 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997106921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.994 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds