Wall clock time and date at job start Tue Mar 31 2020 12:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.90101 * 2 1 4 4 N 1.40088 * 108.20760 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.03497 * 180.02562 * 4 3 2 6 6 C 1.34944 * 107.92196 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.12609 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74924 * 359.75810 * 6 4 3 9 9 C 1.50697 * 126.04207 * 180.27260 * 8 6 4 10 10 H 1.09003 * 109.47331 * 0.16428 * 9 8 6 11 11 C 1.52994 * 109.47162 * 240.16412 * 9 8 6 12 12 C 1.50702 * 109.47252 * 120.16128 * 9 8 6 13 13 O 1.21290 * 119.99715 * 7.93656 * 12 9 8 14 14 N 1.34769 * 120.00307 * 187.94147 * 12 9 8 15 15 C 1.46930 * 120.63108 * 185.22519 * 14 12 9 16 16 C 1.52761 * 109.00612 * 233.57697 * 15 14 12 17 17 C 1.53039 * 109.38600 * 305.58832 * 16 15 14 18 18 N 1.46502 * 109.45994 * 181.25698 * 17 16 15 19 19 C 1.36938 * 119.99819 * 84.93334 * 18 17 16 20 20 H 1.08006 * 119.99862 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00283 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00189 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99884 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47300 * 89.99636 * 23 21 19 25 25 H 1.48497 * 109.47295 * 210.00025 * 23 21 19 26 26 H 1.48500 * 109.46803 * 329.99817 * 23 21 19 27 27 C 1.53050 * 109.53760 * 61.24069 * 17 16 15 28 28 C 1.46926 * 120.63212 * 5.49711 * 14 12 9 29 29 H 1.09000 * 109.47137 * 90.02493 * 1 2 3 30 30 H 1.09000 * 109.47145 * 210.02705 * 1 2 3 31 31 H 1.09009 * 109.46947 * 330.02557 * 1 2 3 32 32 H 1.08994 * 109.47230 * 89.97805 * 7 6 4 33 33 H 1.09004 * 109.47255 * 209.98166 * 7 6 4 34 34 H 1.09005 * 109.46637 * 329.97846 * 7 6 4 35 35 H 1.09002 * 109.47192 * 174.48179 * 11 9 8 36 36 H 1.08998 * 109.46749 * 294.47411 * 11 9 8 37 37 H 1.08995 * 109.47275 * 54.47404 * 11 9 8 38 38 H 1.08993 * 109.58596 * 353.41179 * 15 14 12 39 39 H 1.09004 * 109.58501 * 113.84428 * 15 14 12 40 40 H 1.09001 * 109.56521 * 185.55062 * 16 15 14 41 41 H 1.08997 * 109.35939 * 65.49972 * 16 15 14 42 42 H 1.09001 * 109.45111 * 301.22736 * 17 16 15 43 43 H 0.96995 * 120.00417 * 264.93306 * 18 17 16 44 44 H 0.96999 * 119.99929 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.49536 * 178.68250 * 27 17 16 46 46 H 1.08995 * 109.49518 * 58.58414 * 27 17 16 47 47 H 1.08998 * 109.59134 * 246.16272 * 28 14 12 48 48 H 1.09000 * 109.58399 * 6.44381 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0015 7 6 4.8350 -1.5990 0.0030 8 6 2.3270 -1.1331 0.0070 9 6 1.8598 -2.5657 0.0156 10 1 2.7241 -3.2298 0.0199 11 6 1.0162 -2.8346 -1.2321 12 6 1.0284 -2.8156 1.2475 13 8 0.7137 -1.8895 1.9648 14 7 0.6347 -4.0679 1.5523 15 6 -0.2696 -4.3139 2.6839 16 6 0.3611 -5.3541 3.6078 17 6 0.7117 -6.6054 2.7994 18 7 1.2891 -7.6156 3.6896 19 6 0.4694 -8.4576 4.3926 20 1 -0.6028 -8.3773 4.2905 21 6 1.0165 -9.4152 5.2356 22 7 0.2287 -10.2248 5.9110 23 14 2.8710 -9.5546 5.4117 24 1 3.3307 -8.6769 6.5177 25 1 3.2352 -10.9624 5.7129 26 1 3.5214 -9.1355 4.1442 27 6 1.7261 -6.2446 1.7118 28 6 1.1064 -5.2139 0.7629 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5135 32 1 5.1289 -1.8111 1.0309 33 1 4.6078 -2.5336 -0.5101 34 1 5.6514 -1.0915 -0.5111 35 1 0.7602 -3.8932 -1.2765 36 1 0.1028 -2.2416 -1.1877 37 1 1.5845 -2.5606 -2.1209 38 1 -0.4271 -3.3862 3.2340 39 1 -1.2241 -4.6885 2.3141 40 1 -0.3435 -5.6164 4.3970 41 1 1.2674 -4.9416 4.0510 42 1 -0.1913 -7.0031 2.3362 43 1 2.2521 -7.6880 3.7810 44 1 0.6110 -10.8936 6.5003 45 1 1.9930 -7.1407 1.1515 46 1 2.6195 -5.8236 2.1729 47 1 0.2664 -5.6634 0.2333 48 1 1.8546 -4.8794 0.0443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997106921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:41 Heat of formation + Delta-G solvation = 19.647097 kcal Electronic energy + Delta-G solvation = -27992.468411 eV Core-core repulsion = 24275.956014 eV Total energy + Delta-G solvation = -3716.512396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49187 -41.04657 -38.75395 -36.21582 -35.37023 -34.26558 -33.79902 -32.14439 -31.57812 -30.81530 -28.94282 -27.64519 -26.77060 -25.26680 -24.04518 -23.68181 -21.88730 -21.10322 -20.72721 -19.84174 -19.31778 -18.34282 -17.77525 -16.74280 -16.62831 -16.34207 -15.98865 -15.82687 -15.25700 -15.05641 -14.87792 -14.79221 -14.58062 -14.26420 -14.24889 -14.05663 -13.74215 -13.53523 -13.36081 -13.27291 -13.19410 -12.98683 -12.90634 -12.83391 -12.64697 -12.35208 -12.26639 -12.07879 -11.98973 -11.90334 -11.75153 -11.33782 -11.31585 -10.91499 -10.52354 -10.14453 -9.55055 -9.30572 -9.27652 -7.99640 -5.32632 0.93319 1.38824 1.42895 1.50126 1.66186 1.78763 2.01405 2.22295 2.50915 3.31954 3.54295 3.68590 3.69379 3.78619 3.89923 4.14782 4.21725 4.23641 4.26194 4.29640 4.37938 4.46762 4.49383 4.59107 4.67624 4.74608 4.76696 4.79072 4.84757 4.88852 4.91050 4.98717 5.02063 5.10102 5.11675 5.17370 5.20454 5.27268 5.36093 5.41655 5.50902 5.67829 5.78420 5.81209 6.24838 6.48939 6.57477 6.78644 7.11424 7.32352 7.88243 8.06537 9.22054 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.002974 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.189219 B = 9413.264369 C = 9931.971781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.098 3.902 3 N -0.343 5.343 4 N -0.476 5.476 5 H 0.448 0.552 6 C 0.099 3.901 7 C -0.095 4.095 8 C -0.240 4.240 9 C -0.021 4.021 10 H 0.123 0.877 11 C -0.142 4.142 12 C 0.515 3.485 13 O -0.573 6.573 14 N -0.606 5.606 15 C 0.123 3.877 16 C -0.139 4.139 17 C 0.176 3.824 18 N -0.752 5.752 19 C -0.225 4.225 20 H 0.057 0.943 21 C -0.068 4.068 22 N -0.987 5.987 23 Si 0.954 3.046 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.244 1.244 27 C -0.135 4.135 28 C 0.112 3.888 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.364 0.636 44 H 0.256 0.744 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 18.125 -20.851 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 N -0.167 5.167 4 N -0.185 5.185 5 H 0.294 0.706 6 C -0.031 4.031 7 C -0.153 4.153 8 C -0.251 4.251 9 C -0.043 4.043 10 H 0.141 0.859 11 C -0.199 4.199 12 C 0.305 3.695 13 O -0.452 6.452 14 N -0.339 5.339 15 C -0.001 4.001 16 C -0.180 4.180 17 C 0.068 3.932 18 N -0.394 5.394 19 C -0.356 4.356 20 H 0.075 0.925 21 C -0.259 4.259 22 N -0.638 5.638 23 Si 0.782 3.218 24 H -0.213 1.213 25 H -0.225 1.225 26 H -0.169 1.169 27 C -0.174 4.174 28 C -0.011 4.011 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.198 0.802 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.941 19.783 -20.426 29.808 hybrid contribution 0.967 -0.844 1.337 1.853 sum 9.907 18.939 -19.089 28.657 Atomic orbital electron populations 1.20350 0.86766 1.03438 1.02805 1.22325 0.97397 0.90429 0.96612 1.77202 0.87774 1.23347 1.28416 1.46123 1.06977 1.05288 1.60098 0.70647 1.21408 0.97580 0.85168 0.98911 1.20675 0.91786 0.98550 1.04334 1.19364 0.91665 0.95137 1.18981 1.19551 0.99076 0.92797 0.92905 0.85928 1.21900 0.99585 1.03237 0.95193 1.21180 0.79773 0.81607 0.86986 1.90660 1.58036 1.43707 1.52845 1.48203 1.47655 1.06748 1.31270 1.21328 0.92617 0.98531 0.87603 1.22340 1.00177 0.96789 0.98714 1.20421 0.96085 0.86962 0.89747 1.42827 1.04546 1.39233 1.52807 1.19031 0.90686 1.08737 1.17129 0.92541 1.25510 1.02296 0.98466 0.99622 1.69887 1.35862 1.24443 1.33574 0.85415 0.81076 0.76433 0.78884 1.21273 1.22508 1.16860 1.22176 0.98269 0.99965 0.97007 1.22045 1.00835 0.85108 0.93077 0.89338 0.90178 0.92218 0.89798 0.87679 0.88765 0.89685 0.92791 0.90087 0.90945 0.90527 0.93275 0.93615 0.93255 0.80244 0.93508 0.89146 0.91759 0.89244 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 8.57 71.24 0.61 -1.10 16 2 C 0.10 2.49 6.52 43.10 0.28 2.77 16 3 N -0.34 -9.04 12.70 -47.39 -0.60 -9.65 16 4 N -0.48 -9.03 7.36 -48.00 -0.35 -9.38 16 5 H 0.45 5.46 8.96 -213.33 -1.91 3.54 16 6 C 0.10 1.70 7.21 41.41 0.30 2.00 16 7 C -0.10 -0.78 10.06 71.24 0.72 -0.07 16 8 C -0.24 -5.03 4.45 -20.14 -0.09 -5.12 16 9 C -0.02 -0.35 2.03 -12.29 -0.02 -0.38 16 10 H 0.12 1.37 5.68 -2.39 -0.01 1.36 16 11 C -0.14 -1.69 8.67 71.98 0.62 -1.07 16 12 C 0.51 12.40 6.27 87.66 0.55 12.95 16 13 O -0.57 -18.68 12.70 -3.06 -0.04 -18.72 16 14 N -0.61 -13.64 2.98 -819.73 -2.44 -16.09 16 15 C 0.12 3.38 6.41 86.22 0.55 3.93 16 16 C -0.14 -4.67 5.64 30.53 0.17 -4.50 16 17 C 0.18 5.94 2.73 45.02 0.12 6.07 16 18 N -0.75 -33.06 4.93 -322.79 -1.59 -34.65 16 19 C -0.22 -12.42 10.41 84.03 0.87 -11.55 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 22 N -0.99 -62.93 13.97 21.65 0.30 -62.63 16 23 Si 0.95 44.60 27.74 68.60 1.90 46.50 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.24 -9.97 6.52 99.48 0.65 -9.32 16 27 C -0.14 -3.13 5.55 30.67 0.17 -2.96 16 28 C 0.11 1.83 5.11 86.36 0.44 2.27 16 29 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 30 H 0.08 2.01 4.97 -2.39 -0.01 1.99 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.52 7.16 -2.39 -0.02 0.50 16 34 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.08 0.71 6.18 -2.39 -0.01 0.69 16 36 H 0.05 0.78 6.36 -2.39 -0.02 0.76 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 43 H 0.36 15.37 5.66 -92.71 -0.52 14.85 16 44 H 0.26 15.62 8.31 -92.71 -0.77 14.84 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 48 H 0.12 1.14 5.01 -2.39 -0.01 1.13 16 Total: -1.00 -79.93 369.09 1.44 -78.48 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -1.50 Total: 26.36 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.77 Total: -0.23 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -4.68 Total: -132.39 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -79.93 1.44 -78.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997106921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.130 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds