Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34263 * 126.29223 * 2 1 4 4 H 0.96993 * 125.75506 * 0.02878 * 3 2 1 5 5 N 1.39934 * 108.48887 * 180.24693 * 3 2 1 6 6 C 1.30450 * 108.90254 * 359.74209 * 5 3 2 7 7 C 1.50698 * 125.98939 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.47415 * 300.00495 * 7 6 5 9 9 C 1.52994 * 109.47098 * 60.00840 * 7 6 5 10 10 C 1.38044 * 126.29021 * 179.81824 * 2 1 3 11 11 C 1.47423 * 126.41507 * 0.02568 * 10 2 1 12 12 O 1.21605 * 119.99864 * 269.68262 * 11 10 2 13 13 N 1.34776 * 120.00355 * 89.68850 * 11 10 2 14 14 C 1.46500 * 120.00425 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.52297 * 325.08259 * 14 13 11 16 16 C 1.53039 * 109.50171 * 204.99503 * 14 13 11 17 17 C 1.53035 * 109.53913 * 178.67962 * 16 14 13 18 18 C 1.53199 * 109.30939 * 61.36947 * 17 16 14 19 19 N 1.46921 * 108.77728 * 305.36205 * 18 17 16 20 20 C 1.36934 * 120.63469 * 233.58815 * 19 18 17 21 21 H 1.07997 * 120.00732 * 152.05270 * 20 19 18 22 22 C 1.38819 * 119.99528 * 332.05397 * 20 19 18 23 23 N 1.31612 * 119.99824 * 335.33811 * 22 20 19 24 24 Si 1.86795 * 120.00002 * 155.34236 * 22 20 19 25 25 H 1.48495 * 109.47350 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47440 * 59.99449 * 24 22 20 27 27 H 1.48504 * 109.47119 * 300.00193 * 24 22 20 28 28 C 1.46932 * 118.73683 * 53.86158 * 19 18 17 29 29 H 1.08995 * 109.47409 * 270.17888 * 1 2 3 30 30 H 1.09000 * 109.47166 * 30.18037 * 1 2 3 31 31 H 1.09000 * 109.46940 * 150.17545 * 1 2 3 32 32 H 1.09000 * 109.46707 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47249 * 59.99704 * 8 7 6 34 34 H 1.08991 * 109.47549 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47489 * 300.00088 * 8 7 6 36 36 H 1.09000 * 109.47520 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47283 * 299.99576 * 9 7 6 38 38 H 1.09000 * 109.47378 * 59.99417 * 9 7 6 39 39 H 0.96998 * 119.99690 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.45666 * 58.66357 * 16 14 13 41 41 H 1.08994 * 109.44982 * 298.69860 * 16 14 13 42 42 H 1.08997 * 109.50354 * 301.41793 * 17 16 14 43 43 H 1.08999 * 109.49835 * 181.31756 * 17 16 14 44 44 H 1.08998 * 109.58737 * 185.57631 * 18 17 16 45 45 H 1.09000 * 109.70042 * 65.22161 * 18 17 16 46 46 H 0.97002 * 120.00681 * 354.25216 * 23 22 20 47 47 H 1.08998 * 109.58755 * 65.92703 * 28 19 18 48 48 H 1.09004 * 109.58577 * 186.35259 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6543 -0.0057 6 6 3.6590 -0.6499 -0.0036 7 6 4.8951 -1.5119 -0.0075 8 6 5.7206 -1.2142 -1.2608 9 6 5.7314 -1.2100 1.2376 10 6 2.3240 -1.1127 0.0035 11 6 1.8858 -2.5202 0.0075 12 8 1.7102 -3.0994 1.0622 13 7 1.6798 -3.1652 -1.1579 14 6 1.2448 -4.5642 -1.1540 15 1 1.7024 -5.0856 -0.3132 16 6 1.6685 -5.2346 -2.4628 17 6 1.2435 -6.7047 -2.4459 18 6 -0.2817 -6.7897 -2.3309 19 7 -0.7106 -6.0240 -1.1526 20 6 -1.4966 -6.6031 -0.1923 21 1 -1.4471 -6.2544 0.8286 22 6 -2.3570 -7.6384 -0.5312 23 7 -2.7928 -7.7537 -1.7677 24 14 -2.8962 -8.8677 0.7677 25 1 -3.8082 -9.8669 0.1553 26 1 -3.6057 -8.1546 1.8601 27 1 -1.7037 -9.5587 1.3206 28 6 -0.2851 -4.6233 -1.0271 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 4.6053 -2.5627 -0.0049 33 1 6.0104 -0.1634 -1.2639 34 1 6.6144 -1.8379 -1.2639 35 1 5.1249 -1.4293 -2.1479 36 1 6.6252 -1.8338 1.2350 37 1 6.0212 -0.1593 1.2346 38 1 5.1433 -1.4221 2.1305 39 1 1.8195 -2.7032 -1.9992 40 1 2.7515 -5.1709 -2.5693 41 1 1.1908 -4.7281 -3.3013 42 1 1.7012 -7.2060 -1.5930 43 1 1.5663 -7.1873 -3.3683 44 1 -0.5822 -7.8315 -2.2188 45 1 -0.7416 -6.3710 -3.2260 46 1 -2.5811 -7.0700 -2.4224 47 1 -0.7434 -4.0299 -1.8184 48 1 -0.5879 -4.2351 -0.0545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009144607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = 32.675340 kcal Electronic energy + Delta-G solvation = -27944.868792 eV Core-core repulsion = 24228.921342 eV Total energy + Delta-G solvation = -3715.947449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65323 -39.24999 -37.34868 -35.94792 -34.39153 -32.59688 -32.22102 -30.99456 -30.36991 -28.68172 -27.31505 -27.29993 -25.07481 -23.48142 -23.22166 -22.17144 -21.27981 -19.81011 -19.25036 -19.16595 -17.84093 -17.36227 -16.34943 -15.85130 -15.10324 -15.04593 -14.68553 -14.45977 -14.27740 -13.94361 -13.81206 -13.52382 -13.50529 -13.39515 -13.00833 -12.84318 -12.72492 -12.57974 -12.32308 -12.30055 -11.99593 -11.64108 -11.38843 -11.25081 -11.13717 -10.77477 -10.71783 -10.66964 -10.33869 -10.09609 -10.03300 -9.95766 -9.62322 -9.56232 -9.29100 -8.84430 -8.73751 -8.27117 -6.85330 -6.03112 -3.19959 1.52751 2.30761 2.49598 2.81318 3.52235 3.55602 3.57601 3.75484 4.19866 4.45589 4.64565 4.66822 4.86335 4.97967 4.99621 5.20526 5.23702 5.28001 5.31556 5.37049 5.43358 5.48317 5.59596 5.63557 5.64832 5.66384 5.68181 5.73859 5.83733 5.98055 6.06729 6.07520 6.08839 6.15821 6.30646 6.40890 6.46120 6.59303 6.63947 6.73969 6.92384 6.96221 7.09208 7.20354 7.41452 7.79616 8.07422 8.51167 8.61861 9.14602 9.88336 10.30915 11.25183 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003265 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.483435 B = 8573.970303 C = 9083.476020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.131 3.869 3 N -0.465 5.465 4 H 0.440 0.560 5 N -0.292 5.292 6 C 0.125 3.875 7 C -0.019 4.019 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.278 4.278 11 C 0.593 3.407 12 O -0.529 6.529 13 N -0.715 5.715 14 C 0.126 3.874 15 H 0.087 0.913 16 C -0.115 4.115 17 C -0.134 4.134 18 C 0.147 3.853 19 N -0.595 5.595 20 C -0.347 4.347 21 H 0.057 0.943 22 C -0.023 4.023 23 N -0.918 5.918 24 Si 1.064 2.936 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.145 3.855 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.395 0.605 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.017 0.983 46 H 0.268 0.732 47 H 0.015 0.985 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.567 16.916 -1.531 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.001 4.001 3 N -0.172 5.172 4 H 0.284 0.716 5 N -0.114 5.114 6 C -0.043 4.043 7 C -0.039 4.039 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.293 4.293 11 C 0.377 3.623 12 O -0.404 6.404 13 N -0.365 5.365 14 C 0.020 3.980 15 H 0.105 0.895 16 C -0.153 4.153 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.319 5.319 20 C -0.476 4.476 21 H 0.075 0.925 22 C -0.225 4.225 23 N -0.558 5.558 24 Si 0.894 3.106 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.018 3.982 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.035 0.965 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.240 16.116 -0.480 20.863 hybrid contribution 0.217 1.638 -0.639 1.772 sum 13.457 17.754 -1.119 22.306 Atomic orbital electron populations 1.20598 0.86333 1.04569 1.04413 1.21399 0.94496 0.86683 0.97522 1.45975 1.04105 1.08174 1.58913 0.71567 1.77008 0.95626 1.12498 1.26236 1.22234 0.94018 0.91096 0.96907 1.19679 0.89904 0.97456 0.96904 1.21805 0.99477 1.02244 0.96331 1.21795 0.99374 1.02096 0.96681 1.19993 0.92899 0.93712 1.22658 1.17269 0.76627 0.84495 0.83955 1.90823 1.50694 1.67739 1.31183 1.46159 1.68629 1.13817 1.07936 1.21818 0.97921 0.79455 0.98783 0.89454 1.21668 0.99657 0.97403 0.96553 1.22054 1.00125 0.94353 1.00825 1.21004 0.89795 0.98185 0.88897 1.44068 1.57877 1.05915 1.23998 1.20017 1.18653 1.19687 0.89236 0.92517 1.25838 0.94336 1.01299 1.01042 1.70787 1.42110 1.38232 1.04680 0.83539 0.76051 0.76461 0.74578 1.21141 1.21976 1.21983 1.21269 0.90398 0.87325 0.99257 0.89219 0.90440 0.88951 0.89357 0.92013 0.91847 0.92503 0.91860 0.92060 0.92304 0.77220 0.92756 0.92304 0.92022 0.92536 0.90079 0.96510 0.92127 0.96727 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.25 36.00 0.37 -0.52 16 2 C 0.13 1.45 7.29 -81.60 -0.60 0.86 16 3 N -0.47 -4.52 7.29 33.86 0.25 -4.27 16 4 H 0.44 2.67 8.96 -182.73 -1.64 1.04 16 5 N -0.29 -3.52 12.63 33.90 0.43 -3.09 16 6 C 0.13 1.59 5.77 -82.02 -0.47 1.11 16 7 C -0.02 -0.21 3.31 -91.78 -0.30 -0.51 16 8 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 9 C -0.14 -1.43 9.17 37.15 0.34 -1.09 16 10 C -0.28 -3.79 5.88 -105.07 -0.62 -4.41 16 11 C 0.59 9.62 6.64 -12.52 -0.08 9.54 16 12 O -0.53 -11.00 16.77 5.27 0.09 -10.92 16 13 N -0.72 -10.50 5.08 -54.54 -0.28 -10.77 16 14 C 0.13 2.24 2.62 -67.58 -0.18 2.07 16 15 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 16 C -0.11 -1.81 5.35 -26.69 -0.14 -1.95 16 17 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 18 C 0.15 3.38 4.69 -3.71 -0.02 3.36 16 19 N -0.59 -15.02 2.84 -172.04 -0.49 -15.51 16 20 C -0.35 -9.89 9.49 -15.06 -0.14 -10.03 16 21 H 0.06 1.66 7.94 -52.49 -0.42 1.25 16 22 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 23 N -0.92 -27.44 12.41 55.49 0.69 -26.75 16 24 Si 1.06 25.64 29.98 -169.99 -5.10 20.54 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 C 0.15 3.13 6.12 -3.48 -0.02 3.11 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 32 H 0.09 1.07 7.56 -51.93 -0.39 0.67 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 4.71 8.59 -40.82 -0.35 4.36 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 2.10 6.31 -51.93 -0.33 1.78 16 45 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 46 H 0.27 8.03 6.69 -40.82 -0.27 7.76 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -34.54 388.09 -9.65 -44.19 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -9.32 Total: 3.48 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.77 Total: -2.74 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.60 Total: -60.40 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.54 -9.65 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009144607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.867 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds