Wall clock time and date at job start Tue Mar 31 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47160 * 2 1 4 4 N 1.30450 * 125.98744 * 269.68485 * 3 2 1 5 5 N 1.39933 * 108.90019 * 180.26496 * 4 3 2 6 6 H 0.96994 * 125.76123 * 180.02562 * 5 4 3 7 7 C 1.34263 * 108.49085 * 0.02562 * 5 4 3 8 8 C 1.38046 * 107.41594 * 359.97438 * 7 5 4 9 9 C 1.47429 * 126.41615 * 180.02562 * 8 7 5 10 10 O 1.21604 * 120.00192 * 220.82401 * 9 8 7 11 11 N 1.34772 * 119.99898 * 40.81963 * 9 8 7 12 12 C 1.46921 * 120.63214 * 5.25233 * 11 9 8 13 13 C 1.53628 * 108.54539 * 126.36640 * 12 11 9 14 14 C 1.53039 * 109.24091 * 54.85797 * 13 12 11 15 15 H 1.08997 * 109.46398 * 58.53395 * 14 13 12 16 16 N 1.46501 * 109.45671 * 178.49414 * 14 13 12 17 17 C 1.36942 * 119.99837 * 275.05989 * 16 14 13 18 18 H 1.07997 * 119.99961 * 0.02562 * 17 16 14 19 19 C 1.38805 * 119.99956 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47049 * 60.00103 * 21 19 17 23 23 H 1.48499 * 109.47261 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46722 * 300.00243 * 21 19 17 25 25 C 1.53039 * 109.53474 * 298.50916 * 14 13 12 26 26 H 1.09000 * 109.52737 * 301.40040 * 25 14 13 27 27 C 1.53004 * 109.49622 * 181.31712 * 25 14 13 28 28 C 1.53000 * 109.47352 * 175.16240 * 27 25 14 29 29 C 1.46935 * 120.63137 * 185.52642 * 11 9 8 30 30 H 1.09005 * 109.47008 * 59.99991 * 1 2 3 31 31 H 1.09004 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47194 * 300.00029 * 1 2 3 33 33 H 1.08999 * 109.46823 * 239.99287 * 2 1 3 34 34 H 1.09005 * 109.47008 * 120.00009 * 2 1 3 35 35 H 1.07997 * 126.29451 * 179.97438 * 7 5 4 36 36 H 1.09008 * 109.59137 * 246.19964 * 12 11 9 37 37 H 1.09001 * 109.59153 * 6.62636 * 12 11 9 38 38 H 1.08996 * 109.63395 * 294.86685 * 13 12 11 39 39 H 1.09005 * 109.43188 * 174.72442 * 13 12 11 40 40 H 0.96996 * 120.00525 * 95.07293 * 16 14 13 41 41 H 0.97006 * 119.99755 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.47168 * 295.16447 * 27 25 14 43 43 H 1.09000 * 109.46904 * 55.16605 * 27 25 14 44 44 H 1.08995 * 109.47127 * 179.97438 * 28 27 25 45 45 H 1.08997 * 109.47236 * 300.00400 * 28 27 25 46 46 H 1.09000 * 109.46819 * 60.00312 * 28 27 25 47 47 H 1.08999 * 109.58516 * 353.37985 * 29 11 9 48 48 H 1.09003 * 109.58067 * 113.65432 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2933 2.1415 -1.0555 5 7 2.7428 3.4013 -0.6443 6 1 3.0045 4.1288 -1.2301 7 6 2.7509 3.4333 0.6979 8 6 2.3094 2.2035 1.1432 9 6 2.1555 1.7852 2.5485 10 8 2.4848 0.6652 2.8891 11 7 1.6499 2.6440 3.4557 12 6 1.1414 3.9583 3.0401 13 6 -0.2937 4.1154 3.5654 14 6 -0.3047 3.8875 5.0787 15 1 0.3633 4.6028 5.5585 16 7 -1.6652 4.0716 5.5900 17 6 -2.1137 5.3262 5.9066 18 1 -1.4647 6.1798 5.7790 19 6 -3.4025 5.5005 6.3916 20 7 -4.1933 4.4600 6.5477 21 14 -4.0147 7.2120 6.8229 22 1 -3.9664 8.0740 5.6146 23 1 -5.4128 7.1280 7.3160 24 1 -3.1511 7.7944 7.8813 25 6 0.1670 2.4643 5.3853 26 1 -0.4860 1.7485 4.8858 27 6 0.1244 2.2265 6.8961 28 6 0.4798 0.7683 7.1932 29 6 1.6021 2.2862 4.8800 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.0482 4.2677 1.3157 36 1 1.7736 4.7430 3.4560 37 1 1.1429 4.0235 1.9521 38 1 -0.9424 3.3846 3.0827 39 1 -0.6520 5.1214 3.3464 40 1 -2.2482 3.3049 5.7046 41 1 -5.0939 4.5819 6.8870 42 1 0.8426 2.8830 7.3876 43 1 -0.8773 2.4396 7.2693 44 1 0.4499 0.5991 8.2695 45 1 -0.2383 0.1120 6.7017 46 1 1.4815 0.5553 6.8200 47 1 1.9078 1.2476 5.0063 48 1 2.2731 2.9355 5.4425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037882021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:14 Heat of formation + Delta-G solvation = 35.522157 kcal Electronic energy + Delta-G solvation = -28187.257722 eV Core-core repulsion = 24471.433720 eV Total energy + Delta-G solvation = -3715.824002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66121 -39.67008 -37.59425 -34.80527 -34.27000 -33.77760 -31.71093 -30.76641 -30.44760 -29.45625 -28.38105 -25.28478 -24.18208 -23.82854 -23.33968 -22.02812 -20.77705 -20.42628 -19.62572 -19.21613 -17.70190 -17.08659 -16.67221 -15.78623 -15.38961 -14.94909 -14.75471 -14.63918 -14.16244 -13.95888 -13.87088 -13.68307 -13.30618 -13.23540 -13.12270 -12.93793 -12.59104 -12.44449 -12.08567 -11.80465 -11.63215 -11.50913 -11.30117 -11.26813 -10.93445 -10.89539 -10.83748 -10.68240 -10.31999 -10.23701 -10.13727 -9.76323 -9.72744 -9.64916 -9.57905 -8.94776 -8.83669 -8.38702 -6.96692 -5.78248 -3.06881 1.41406 2.09931 2.49616 3.05602 3.36442 3.41217 3.46069 3.47275 4.30378 4.47928 4.56626 4.86716 4.93390 5.07848 5.23776 5.27522 5.29823 5.33656 5.37463 5.39310 5.48469 5.54249 5.57559 5.61370 5.70729 5.72177 5.88406 5.92823 6.03035 6.04936 6.14440 6.15967 6.17979 6.32766 6.34350 6.39292 6.42640 6.48467 6.61642 6.71947 6.84591 6.89479 6.98423 7.07727 7.36282 7.60468 7.66748 8.35381 8.40023 9.51377 10.09332 10.44150 11.44099 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.003618 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.778954 B = 7737.563412 C = 8564.466674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.134 3.866 4 N -0.298 5.298 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.100 3.900 8 C -0.276 4.276 9 C 0.594 3.406 10 O -0.546 6.546 11 N -0.602 5.602 12 C 0.102 3.898 13 C -0.150 4.150 14 C 0.184 3.816 15 H 0.047 0.953 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.068 0.932 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.104 4.104 26 H 0.070 0.930 27 C -0.112 4.112 28 C -0.152 4.152 29 C 0.121 3.879 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.187 0.813 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.887 -3.777 -11.033 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.034 4.034 4 N -0.121 5.121 5 N -0.169 5.169 6 H 0.287 0.713 7 C -0.052 4.052 8 C -0.291 4.291 9 C 0.382 3.618 10 O -0.424 6.424 11 N -0.334 5.334 12 C -0.022 4.022 13 C -0.191 4.191 14 C 0.073 3.927 15 H 0.065 0.935 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.124 4.124 26 H 0.088 0.912 27 C -0.150 4.150 28 C -0.210 4.210 29 C -0.002 4.002 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.203 0.797 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.024 -4.157 -12.056 19.706 hybrid contribution -0.532 1.508 0.791 1.784 sum 14.492 -2.649 -11.265 18.545 Atomic orbital electron populations 1.21684 0.93854 1.02282 1.02338 1.20139 0.96440 0.88246 1.04349 1.22400 0.95536 0.96815 0.88678 1.77126 1.21771 0.90751 1.22421 1.46073 1.51975 1.13452 1.05404 0.71263 1.23170 0.98166 0.98417 0.85480 1.20237 1.18750 0.95359 0.94728 1.17286 0.76762 0.84179 0.83545 1.90726 1.51474 1.19922 1.80264 1.48011 1.60568 1.17132 1.07702 1.22118 0.96497 0.83584 0.99977 1.22742 0.93557 1.02533 1.00263 1.20184 0.88583 0.93031 0.90853 0.93518 1.42405 1.09845 1.07013 1.76777 1.19157 0.96361 0.85694 1.35794 0.91355 1.24711 0.96809 0.96972 1.02240 1.69649 1.08132 1.28245 1.51934 0.86321 0.77829 0.84181 0.78144 1.21391 1.21756 1.21323 1.21771 0.95222 0.98995 0.96385 0.91154 1.21452 1.03480 0.95416 0.94636 1.21840 1.00970 0.97394 1.00770 1.21743 0.97219 1.02060 0.79135 0.92603 0.91698 0.92269 0.90287 0.88297 0.79651 0.91688 0.90305 0.92177 0.90813 0.78188 0.93477 0.92517 0.89851 0.93240 0.92960 0.93186 0.89041 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.62 6.32 -27.88 -0.18 -0.79 16 3 C 0.13 1.72 6.51 -82.02 -0.53 1.19 16 4 N -0.30 -3.62 12.63 33.89 0.43 -3.19 16 5 N -0.46 -4.06 7.29 30.85 0.22 -3.84 16 6 H 0.44 2.20 8.96 -182.73 -1.64 0.56 16 7 C 0.10 0.92 9.63 -16.56 -0.16 0.76 16 8 C -0.28 -3.51 5.21 -105.07 -0.55 -4.05 16 9 C 0.59 8.78 7.44 -12.52 -0.09 8.69 16 10 O -0.55 -9.54 15.19 5.27 0.08 -9.46 16 11 N -0.60 -8.29 2.97 -173.76 -0.52 -8.81 16 12 C 0.10 1.26 5.52 -3.49 -0.02 1.24 16 13 C -0.15 -2.44 5.67 -26.38 -0.15 -2.59 16 14 C 0.18 3.37 2.19 -67.89 -0.15 3.22 16 15 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 16 N -0.72 -16.91 4.33 -53.39 -0.23 -17.14 16 17 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 21 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.10 -1.67 1.93 -90.50 -0.17 -1.84 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 28 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 29 C 0.12 1.72 5.33 -3.71 -0.02 1.70 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.27 6.82 -51.93 -0.35 0.92 16 35 H 0.19 1.09 7.35 -52.49 -0.39 0.71 16 36 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.87 4.80 -51.93 -0.25 0.62 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.38 9.81 7.51 -40.82 -0.31 9.51 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 47 H 0.09 1.36 5.71 -51.93 -0.30 1.06 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -32.36 379.40 -9.27 -41.63 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.99 Total: 9.20 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.68 Total: -4.21 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.63 Total: -59.60 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.36 -9.27 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037882021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.153 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds