Wall clock time and date at job start Tue Mar 31 2020 13:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38044 * 126.29237 * 2 1 4 4 C 1.47425 * 126.41251 * 359.97438 * 3 2 1 5 5 O 1.21609 * 120.00087 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00037 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00439 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47380 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.85067 * 45.33724 * 8 7 6 10 10 C 1.53781 * 113.61147 * 176.53103 * 8 7 6 11 11 C 1.53784 * 87.08101 * 139.98568 * 10 8 7 12 12 H 1.08998 * 113.61444 * 219.93832 * 11 10 8 13 13 N 1.46492 * 113.61879 * 89.11305 * 11 10 8 14 14 C 1.36937 * 120.00218 * 154.99970 * 13 11 10 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00088 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00166 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99869 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47294 * 120.00494 * 18 16 14 21 21 H 1.48504 * 109.47141 * 240.00063 * 18 16 14 22 22 C 1.53774 * 113.61713 * 274.13634 * 8 7 6 23 23 C 1.41291 * 107.16935 * 179.85193 * 3 2 1 24 24 N 1.30448 * 108.02294 * 0.42017 * 23 3 2 25 25 N 1.34258 * 126.29153 * 180.31593 * 2 1 3 26 26 C 1.46505 * 125.75296 * 359.97438 * 25 2 1 27 27 C 1.53007 * 109.46961 * 120.00127 * 26 25 2 28 28 C 1.52990 * 109.47303 * 240.00055 * 26 25 2 29 29 H 1.09001 * 109.46953 * 269.68432 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68030 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.68661 * 1 2 3 32 32 H 0.97003 * 119.99933 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47365 * 299.99822 * 7 6 4 34 34 H 1.09005 * 109.47251 * 59.99635 * 7 6 4 35 35 H 1.09006 * 113.61256 * 254.52522 * 10 8 7 36 36 H 1.09002 * 113.62176 * 25.43370 * 10 8 7 37 37 H 0.97007 * 120.00123 * 335.00371 * 13 11 10 38 38 H 0.96993 * 120.00409 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.61489 * 334.57239 * 22 8 7 40 40 H 1.09007 * 113.61406 * 105.46714 * 22 8 7 41 41 H 1.07995 * 125.98613 * 180.15940 * 23 3 2 42 42 H 1.09005 * 109.46947 * 0.02562 * 26 25 2 43 43 H 1.08996 * 109.47021 * 59.99704 * 27 26 25 44 44 H 1.09000 * 109.47245 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.47081 * 299.99761 * 27 26 25 46 46 H 1.09005 * 109.47618 * 300.00201 * 28 26 25 47 47 H 1.09007 * 109.47079 * 59.99977 * 28 26 25 48 48 H 1.09000 * 109.47528 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7999 3.5106 0.0001 7 6 2.3645 4.9094 -0.0010 8 6 3.5902 5.8252 0.0006 9 1 4.3530 5.5127 -0.7126 10 6 3.2419 7.3205 -0.0857 11 6 4.3672 7.5609 0.9345 12 1 4.1219 8.3108 1.6866 13 7 5.6793 7.7790 0.3206 14 6 6.6401 8.4871 0.9919 15 1 6.4308 8.8845 1.9740 16 6 7.8836 8.6933 0.4103 17 7 8.1390 8.2086 -0.7865 18 14 9.1945 9.6586 1.3263 19 1 8.6612 10.0915 2.6428 20 1 10.3875 8.7991 1.5343 21 1 9.5773 10.8523 0.5300 22 6 4.1424 6.1129 1.4066 23 6 3.6591 0.6498 0.0035 24 7 3.6341 -0.6544 -0.0037 25 7 2.3017 -1.0821 -0.0060 26 6 1.8501 -2.4758 -0.0131 27 6 2.3786 -3.1767 -1.2663 28 6 2.3794 -3.1898 1.2321 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3634 0.8928 -0.5088 31 1 -0.3633 -0.8872 -0.5187 32 1 3.7462 3.2973 0.0012 33 1 1.7669 5.1033 -0.8918 34 1 1.7648 5.1040 0.8882 35 1 3.4387 7.7590 -1.0641 36 1 2.2490 7.5604 0.2948 37 1 5.8675 7.4219 -0.5614 38 1 9.0077 8.3530 -1.1930 39 1 3.3961 6.0218 2.1959 40 1 5.0650 5.5777 1.6314 41 1 4.5449 1.2675 0.0068 42 1 0.7604 -2.5046 -0.0133 43 1 3.4682 -3.1478 -1.2665 44 1 2.0422 -4.2135 -1.2719 45 1 2.0015 -2.6680 -2.1535 46 1 3.4690 -3.1610 1.2320 47 1 2.0029 -2.6905 2.1249 48 1 2.0430 -4.2266 1.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086530607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:43 Heat of formation + Delta-G solvation = 56.351097 kcal Electronic energy + Delta-G solvation = -26321.767291 eV Core-core repulsion = 22606.846499 eV Total energy + Delta-G solvation = -3714.920792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72212 -39.36864 -38.28849 -36.03793 -34.58144 -33.18751 -32.58086 -30.69145 -29.96555 -28.00665 -27.79998 -26.72076 -25.01654 -23.82098 -23.30917 -22.58954 -21.51158 -19.94710 -19.62985 -18.35277 -17.57403 -17.23479 -16.41709 -15.87134 -15.69772 -15.08943 -15.00177 -14.76374 -14.37685 -14.10612 -14.04995 -13.62569 -13.49461 -13.39902 -13.09520 -12.99454 -12.85192 -12.74676 -12.65721 -12.41988 -12.20100 -11.88580 -11.86125 -11.67428 -11.34365 -11.01960 -10.95996 -10.84579 -10.44373 -10.13269 -10.02478 -9.70126 -9.67733 -9.62720 -9.41254 -8.99934 -8.87586 -8.63439 -6.98433 -5.79858 -3.08640 1.35374 2.02235 2.06183 3.40081 3.42383 3.48292 3.49690 3.50381 3.97758 4.27600 4.36938 4.43877 4.56771 4.58970 4.74647 4.99522 5.03521 5.11629 5.13720 5.15015 5.18537 5.22356 5.26432 5.27903 5.36574 5.47169 5.56481 5.64647 5.68797 5.73006 5.76275 5.83360 5.92253 6.03552 6.16248 6.25312 6.26893 6.41054 6.54137 6.63942 6.65779 6.78474 6.94722 7.07896 7.36706 7.69628 7.70701 8.39170 8.39493 9.50159 10.08180 10.42297 11.42668 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002206 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.507279 B =12688.559799 C =13695.475156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.154 3.846 3 C -0.296 4.296 4 C 0.593 3.407 5 O -0.557 6.557 6 N -0.720 5.720 7 C 0.134 3.866 8 C -0.119 4.119 9 H 0.093 0.907 10 C -0.148 4.148 11 C 0.167 3.833 12 H 0.062 0.938 13 N -0.706 5.706 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.168 4.168 23 C 0.083 3.917 24 N -0.293 5.293 25 N -0.357 5.357 26 C 0.151 3.849 27 C -0.162 4.162 28 C -0.161 4.161 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.190 0.810 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.089 -23.118 0.880 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.311 4.311 4 C 0.381 3.619 5 O -0.437 6.437 6 N -0.370 5.370 7 C 0.011 3.989 8 C -0.138 4.138 9 H 0.111 0.889 10 C -0.187 4.187 11 C 0.055 3.945 12 H 0.080 0.920 13 N -0.344 5.344 14 C -0.372 4.372 15 H 0.091 0.909 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.209 4.209 23 C -0.105 4.105 24 N -0.112 5.112 25 N -0.137 5.137 26 C 0.049 3.951 27 C -0.219 4.219 28 C -0.219 4.219 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.207 0.793 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.120 -24.009 0.984 28.935 hybrid contribution 1.000 0.927 0.130 1.370 sum -15.120 -23.082 1.115 27.616 Atomic orbital electron populations 1.20690 0.86293 1.04720 1.04044 1.21508 0.94839 0.86356 0.95131 1.20029 0.92895 0.93577 1.24592 1.17197 0.85433 0.83684 0.75570 1.90705 1.16620 1.84430 1.51924 1.45809 1.09714 1.06291 1.75224 1.21439 0.96893 0.78919 1.01636 1.22704 0.96417 0.94937 0.99754 0.88923 1.23436 0.99661 0.94223 1.01417 1.21098 0.86150 0.93480 0.93819 0.92009 1.42180 1.08647 1.63847 1.19774 1.19340 0.92174 1.25966 0.99677 0.90947 1.24765 0.97957 1.01395 0.96863 1.69668 1.22807 1.50259 1.15327 0.86102 0.81882 0.79337 0.78784 1.20505 1.21865 1.21859 1.23906 1.00235 1.02220 0.94543 1.24079 0.97284 0.92047 0.97096 1.77123 0.96185 1.13075 1.24826 1.48702 1.04012 1.05747 1.55268 1.21430 0.99460 0.76466 0.97697 1.22139 1.03259 1.00468 0.96076 1.22130 1.03234 1.00371 0.96151 0.89647 0.87388 0.91371 0.76536 0.91904 0.91650 0.91361 0.90475 0.78110 0.93508 0.91427 0.91524 0.79331 0.87854 0.90823 0.90493 0.91964 0.90827 0.91963 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.41 36.01 0.34 -0.49 16 2 C 0.15 1.67 7.01 -81.60 -0.57 1.10 16 3 C -0.30 -3.66 6.13 -105.07 -0.64 -4.31 16 4 C 0.59 8.32 7.81 -12.52 -0.10 8.22 16 5 O -0.56 -9.14 14.83 5.27 0.08 -9.06 16 6 N -0.72 -9.27 5.55 -61.38 -0.34 -9.61 16 7 C 0.13 1.83 5.50 -4.04 -0.02 1.81 16 8 C -0.12 -1.79 3.62 -89.81 -0.33 -2.11 16 9 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 10 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 11 C 0.17 3.24 4.57 -67.03 -0.31 2.94 16 12 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 13 N -0.71 -17.33 5.31 -52.55 -0.28 -17.61 16 14 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.17 -2.79 7.44 -25.83 -0.19 -2.99 16 23 C 0.08 0.94 11.50 -16.98 -0.20 0.74 16 24 N -0.29 -3.45 12.33 30.86 0.38 -3.07 16 25 N -0.36 -3.55 3.25 -50.16 -0.16 -3.71 16 26 C 0.15 0.98 3.62 -67.93 -0.25 0.73 16 27 C -0.16 -0.93 9.45 37.16 0.35 -0.58 16 28 C -0.16 -0.93 9.44 37.15 0.35 -0.58 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.11 1.11 6.48 -51.93 -0.34 0.77 16 31 H 0.07 0.38 7.07 -51.93 -0.37 0.02 16 32 H 0.40 4.52 7.43 -40.82 -0.30 4.22 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.65 16 37 H 0.38 9.99 7.90 -40.82 -0.32 9.66 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.19 1.67 7.50 -52.49 -0.39 1.28 16 42 H 0.10 0.45 6.63 -51.93 -0.34 0.11 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -33.19 394.26 -8.60 -41.79 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.92 Total: 10.53 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.00 Total: -5.31 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.32 Total: -61.09 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.19 -8.60 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086530607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.143 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds