Wall clock time and date at job start Tue Mar 31 2020 13:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38044 * 126.29237 * 2 1 4 4 C 1.47425 * 126.41251 * 359.97438 * 3 2 1 5 5 O 1.21609 * 120.00087 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00037 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00439 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47380 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.85067 * 45.33724 * 8 7 6 10 10 C 1.53781 * 113.61147 * 176.53103 * 8 7 6 11 11 C 1.53784 * 87.08101 * 139.98568 * 10 8 7 12 12 H 1.08998 * 113.61444 * 219.93832 * 11 10 8 13 13 N 1.46492 * 113.61879 * 89.11305 * 11 10 8 14 14 C 1.36937 * 120.00218 * 154.99970 * 13 11 10 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00088 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00166 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99869 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47294 * 120.00494 * 18 16 14 21 21 H 1.48504 * 109.47141 * 240.00063 * 18 16 14 22 22 C 1.53774 * 113.61713 * 274.13634 * 8 7 6 23 23 C 1.41291 * 107.16935 * 179.85193 * 3 2 1 24 24 N 1.30448 * 108.02294 * 0.42017 * 23 3 2 25 25 N 1.34258 * 126.29153 * 180.31593 * 2 1 3 26 26 C 1.46505 * 125.75296 * 359.97438 * 25 2 1 27 27 C 1.53007 * 109.46961 * 120.00127 * 26 25 2 28 28 C 1.52990 * 109.47303 * 240.00055 * 26 25 2 29 29 H 1.09001 * 109.46953 * 269.68432 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68030 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.68661 * 1 2 3 32 32 H 0.97003 * 119.99933 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47365 * 299.99822 * 7 6 4 34 34 H 1.09005 * 109.47251 * 59.99635 * 7 6 4 35 35 H 1.09006 * 113.61256 * 254.52522 * 10 8 7 36 36 H 1.09002 * 113.62176 * 25.43370 * 10 8 7 37 37 H 0.97007 * 120.00123 * 335.00371 * 13 11 10 38 38 H 0.96993 * 120.00409 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.61489 * 334.57239 * 22 8 7 40 40 H 1.09007 * 113.61406 * 105.46714 * 22 8 7 41 41 H 1.07995 * 125.98613 * 180.15940 * 23 3 2 42 42 H 1.09005 * 109.46947 * 0.02562 * 26 25 2 43 43 H 1.08996 * 109.47021 * 59.99704 * 27 26 25 44 44 H 1.09000 * 109.47245 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.47081 * 299.99761 * 27 26 25 46 46 H 1.09005 * 109.47618 * 300.00201 * 28 26 25 47 47 H 1.09007 * 109.47079 * 59.99977 * 28 26 25 48 48 H 1.09000 * 109.47528 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7999 3.5106 0.0001 7 6 2.3645 4.9094 -0.0010 8 6 3.5902 5.8252 0.0006 9 1 4.3530 5.5127 -0.7126 10 6 3.2419 7.3205 -0.0857 11 6 4.3672 7.5609 0.9345 12 1 4.1219 8.3108 1.6866 13 7 5.6793 7.7790 0.3206 14 6 6.6401 8.4871 0.9919 15 1 6.4308 8.8845 1.9740 16 6 7.8836 8.6933 0.4103 17 7 8.1390 8.2086 -0.7865 18 14 9.1945 9.6586 1.3263 19 1 8.6612 10.0915 2.6428 20 1 10.3875 8.7991 1.5343 21 1 9.5773 10.8523 0.5300 22 6 4.1424 6.1129 1.4066 23 6 3.6591 0.6498 0.0035 24 7 3.6341 -0.6544 -0.0037 25 7 2.3017 -1.0821 -0.0060 26 6 1.8501 -2.4758 -0.0131 27 6 2.3786 -3.1767 -1.2663 28 6 2.3794 -3.1898 1.2321 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3634 0.8928 -0.5088 31 1 -0.3633 -0.8872 -0.5187 32 1 3.7462 3.2973 0.0012 33 1 1.7669 5.1033 -0.8918 34 1 1.7648 5.1040 0.8882 35 1 3.4387 7.7590 -1.0641 36 1 2.2490 7.5604 0.2948 37 1 5.8675 7.4219 -0.5614 38 1 9.0077 8.3530 -1.1930 39 1 3.3961 6.0218 2.1959 40 1 5.0650 5.5777 1.6314 41 1 4.5449 1.2675 0.0068 42 1 0.7604 -2.5046 -0.0133 43 1 3.4682 -3.1478 -1.2665 44 1 2.0422 -4.2135 -1.2719 45 1 2.0015 -2.6680 -2.1535 46 1 3.4690 -3.1610 1.2320 47 1 2.0029 -2.6905 2.1249 48 1 2.0430 -4.2266 1.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086530607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:43 Heat of formation + Delta-G solvation = 34.818347 kcal Electronic energy + Delta-G solvation = -26322.701021 eV Core-core repulsion = 22606.846499 eV Total energy + Delta-G solvation = -3715.854522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53494 -40.56436 -39.59149 -36.63455 -35.95522 -34.90837 -33.36162 -32.15367 -31.20591 -29.03939 -28.24418 -27.79197 -26.39962 -25.68534 -24.05706 -23.69597 -22.74267 -20.97537 -20.31848 -19.74729 -19.30512 -18.38045 -17.30343 -16.82955 -16.69185 -16.62893 -16.08248 -15.74804 -15.61447 -15.52839 -15.00208 -14.75368 -14.66014 -14.49424 -14.10738 -14.05609 -13.69253 -13.62000 -13.33173 -13.24969 -13.10672 -13.06196 -12.92648 -12.89037 -12.61927 -12.37317 -12.21778 -12.11329 -12.02573 -11.75833 -11.48642 -11.44358 -10.96820 -10.86650 -10.68364 -10.39685 -10.06741 -9.54573 -8.97839 -7.94196 -5.22115 0.51146 1.16169 1.33933 1.48820 1.48850 1.59124 2.37785 2.48757 2.56732 3.37718 3.39146 3.57569 3.75447 3.82519 3.84846 3.89402 3.90676 4.00371 4.07540 4.19068 4.22601 4.36400 4.44937 4.48229 4.63247 4.65179 4.66882 4.75958 4.77329 4.79627 4.83758 4.95469 4.96760 5.03251 5.11164 5.16151 5.19428 5.20529 5.34568 5.40217 5.45343 5.53293 5.62013 5.70179 5.94871 6.29847 6.52086 6.68739 7.33860 7.34691 8.12458 8.34543 9.29304 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002206 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.507279 B =12688.559799 C =13695.475156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.154 3.846 3 C -0.323 4.323 4 C 0.593 3.407 5 O -0.585 6.585 6 N -0.717 5.717 7 C 0.144 3.856 8 C -0.102 4.102 9 H 0.080 0.920 10 C -0.134 4.134 11 C 0.143 3.857 12 H 0.060 0.940 13 N -0.720 5.720 14 C -0.239 4.239 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.295 1.295 22 C -0.153 4.153 23 C 0.079 3.921 24 N -0.316 5.316 25 N -0.351 5.351 26 C 0.139 3.861 27 C -0.157 4.157 28 C -0.156 4.156 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.407 0.593 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.204 0.796 42 H 0.132 0.868 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 -24.567 1.763 30.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.021 3.979 3 C -0.338 4.338 4 C 0.382 3.618 5 O -0.467 6.467 6 N -0.367 5.367 7 C 0.021 3.979 8 C -0.121 4.121 9 H 0.098 0.902 10 C -0.173 4.173 11 C 0.033 3.967 12 H 0.078 0.922 13 N -0.358 5.358 14 C -0.371 4.371 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.222 1.222 22 C -0.193 4.193 23 C -0.108 4.108 24 N -0.134 5.134 25 N -0.132 5.132 26 C 0.039 3.961 27 C -0.214 4.214 28 C -0.214 4.214 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.221 0.779 42 H 0.149 0.851 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.772 -25.481 1.903 31.125 hybrid contribution 1.410 1.300 -0.114 1.921 sum -16.362 -24.181 1.789 29.251 Atomic orbital electron populations 1.20731 0.84537 1.05286 1.04828 1.21908 0.95966 0.86248 0.93827 1.20047 0.93734 0.93197 1.26791 1.17411 0.85063 0.84375 0.74934 1.90684 1.17645 1.84922 1.53424 1.45754 1.10096 1.05924 1.74925 1.21267 0.95871 0.78991 1.01772 1.22485 0.96524 0.94816 0.98272 0.90163 1.23340 0.99593 0.94488 0.99863 1.21430 0.85144 0.95011 0.95083 0.92210 1.42314 1.10154 1.63857 1.19460 1.19710 0.92775 1.24939 0.99700 0.90546 1.25546 1.00203 1.03255 0.97887 1.69815 1.23011 1.52235 1.16927 0.85090 0.79086 0.77627 0.78072 1.19042 1.22165 1.22183 1.23730 1.00112 0.99390 0.96108 1.24349 0.97617 0.92173 0.96672 1.77077 0.97622 1.13255 1.25492 1.49035 1.03253 1.06840 1.54028 1.21886 1.01121 0.74782 0.98281 1.22116 1.01935 1.02011 0.95383 1.22106 1.01909 1.01905 0.95458 0.88645 0.89319 0.88224 0.75705 0.91883 0.91378 0.92400 0.87568 0.79356 0.94066 0.89109 0.93387 0.77906 0.85076 0.92781 0.87664 0.92627 0.92779 0.92623 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.41 71.24 0.67 -0.76 16 2 C 0.15 3.17 7.01 42.14 0.30 3.47 16 3 C -0.32 -7.84 6.13 -20.15 -0.12 -7.97 16 4 C 0.59 16.33 7.81 86.66 0.68 17.00 16 5 O -0.58 -18.88 14.83 -4.06 -0.06 -18.94 16 6 N -0.72 -17.91 5.55 -466.37 -2.59 -20.50 16 7 C 0.14 3.73 5.50 86.38 0.47 4.21 16 8 C -0.10 -2.95 3.62 -10.27 -0.04 -2.99 16 9 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 10 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 11 C 0.14 5.48 4.57 45.58 0.21 5.69 16 12 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 13 N -0.72 -35.68 5.31 -320.18 -1.70 -37.38 16 14 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 17 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 18 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 C -0.15 -4.90 7.44 31.18 0.23 -4.67 16 23 C 0.08 1.78 11.50 85.65 0.99 2.77 16 24 N -0.32 -7.30 12.33 -56.28 -0.69 -8.00 16 25 N -0.35 -6.56 3.25 -312.60 -1.02 -7.58 16 26 C 0.14 1.49 3.62 44.99 0.16 1.65 16 27 C -0.16 -1.51 9.45 71.98 0.68 -0.83 16 28 C -0.16 -1.50 9.44 71.98 0.68 -0.82 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.74 6.48 -2.39 -0.02 1.73 16 31 H 0.10 0.81 7.07 -2.39 -0.02 0.79 16 32 H 0.41 9.00 7.43 -92.71 -0.69 8.31 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.77 7.87 -2.38 -0.02 1.75 16 35 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 37 H 0.37 19.88 7.90 -92.70 -0.73 19.15 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.09 2.52 7.92 -2.39 -0.02 2.50 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.20 3.59 7.50 -2.91 -0.02 3.57 16 42 H 0.13 0.68 6.63 -2.38 -0.02 0.67 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -72.44 394.26 2.24 -70.20 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.45 Total: 36.21 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.44 Total: -3.39 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -5.71 Total: -132.16 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.44 2.24 -70.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086530607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.016 kcal (2) G-P(sol) polarization free energy of solvation -72.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds