Wall clock time and date at job start Tue Mar 31 2020 13:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30862 * 125.42114 * 2 1 4 4 C 1.33317 * 109.68487 * 180.02562 * 3 2 1 5 5 C 1.36658 * 107.78604 * 0.02562 * 4 3 2 6 6 C 1.46765 * 126.84238 * 179.97438 * 5 4 3 7 7 O 1.21685 * 119.99791 * 0.02775 * 6 5 4 8 8 N 1.34777 * 120.00334 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00182 * 179.97438 * 8 6 5 10 10 H 1.08994 * 110.21029 * 33.07335 * 9 8 6 11 11 C 1.52655 * 110.21741 * 270.99967 * 9 8 6 12 12 C 1.46236 * 114.19746 * 151.66315 * 11 9 8 13 13 N 1.50165 * 107.59080 * 58.37172 * 12 11 9 14 14 C 1.36936 * 120.53662 * 109.53755 * 13 12 11 15 15 H 1.08006 * 120.00233 * 156.67472 * 14 13 12 16 16 C 1.38810 * 120.00089 * 336.67447 * 14 13 12 17 17 N 1.31613 * 120.00190 * 340.42201 * 16 14 13 18 18 Si 1.86802 * 119.99921 * 160.41827 * 16 14 13 19 19 H 1.48504 * 109.47098 * 90.00534 * 18 16 14 20 20 H 1.48501 * 109.46899 * 210.00000 * 18 16 14 21 21 H 1.48494 * 109.47490 * 330.00228 * 18 16 14 22 22 C 1.43441 * 118.92877 * 289.56079 * 13 12 11 23 23 C 1.54900 * 116.07760 * 91.56234 * 22 13 12 24 24 C 1.52992 * 109.35934 * 78.84824 * 23 22 13 25 25 C 1.53006 * 109.35643 * 198.43736 * 23 22 13 26 26 C 1.50128 * 110.24440 * 155.00446 * 9 8 6 27 27 N 1.34498 * 125.41831 * 180.32461 * 2 1 3 28 28 H 0.97005 * 126.47087 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47163 * 90.02263 * 1 2 3 30 30 H 1.08997 * 109.46727 * 210.01792 * 1 2 3 31 31 H 1.08998 * 109.46572 * 330.01835 * 1 2 3 32 32 H 1.07997 * 126.10154 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99680 * 0.02562 * 8 6 5 34 34 H 1.08998 * 108.61672 * 30.40146 * 11 9 8 35 35 H 1.09001 * 108.50800 * 272.84166 * 11 9 8 36 36 H 1.09001 * 109.84723 * 298.83180 * 12 11 9 37 37 H 1.09000 * 109.84796 * 177.91462 * 12 11 9 38 38 H 0.97001 * 120.00335 * 179.97438 * 17 16 14 39 39 H 1.08995 * 108.16214 * 213.28213 * 22 13 12 40 40 H 1.09000 * 108.15605 * 329.85071 * 22 13 12 41 41 H 1.09000 * 109.47270 * 59.99854 * 24 23 22 42 42 H 1.09001 * 109.47422 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47494 * 299.99833 * 24 23 22 44 44 H 1.08996 * 109.47296 * 59.99821 * 25 23 22 45 45 H 1.09001 * 109.46781 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46497 * 300.00107 * 25 23 22 47 47 H 1.09009 * 109.20588 * 96.31725 * 26 9 8 48 48 H 1.09001 * 109.17651 * 336.98056 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0664 0.0000 4 6 3.5487 0.7048 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8028 -1.4983 -0.0029 7 8 5.9038 -0.9800 -0.0028 8 7 4.6903 -2.8414 -0.0043 9 6 5.8934 -3.6773 -0.0062 10 1 6.6922 -3.1889 0.5518 11 6 6.3397 -3.9562 -1.4392 12 6 7.7772 -4.1808 -1.5864 13 7 8.1463 -5.3456 -0.7134 14 6 8.4982 -6.5469 -1.2684 15 1 9.1064 -7.2426 -0.7093 16 6 8.0734 -6.8706 -2.5496 17 7 7.0480 -6.2401 -3.0819 18 14 8.9570 -8.2012 -3.5184 19 1 8.3237 -9.5162 -3.2444 20 1 8.8651 -7.9004 -4.9697 21 1 10.3843 -8.2447 -3.1113 22 6 8.1238 -5.1796 0.7112 23 6 6.7931 -5.5392 1.4177 24 6 6.6916 -7.0586 1.5651 25 6 6.7652 -4.8949 2.8051 26 6 5.5922 -5.0228 0.5878 27 7 2.2865 -1.0961 -0.0062 28 1 1.9850 -2.0180 -0.0118 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3632 0.8902 0.5136 32 1 4.3978 1.3721 -0.0011 33 1 3.8127 -3.2545 -0.0047 34 1 6.0558 -3.1088 -2.0632 35 1 5.8125 -4.8394 -1.8000 36 1 8.3247 -3.2930 -1.2698 37 1 8.0116 -4.4087 -2.6262 38 1 6.7513 -6.4661 -3.9774 39 1 8.9130 -5.7985 1.1378 40 1 8.3570 -4.1387 0.9356 41 1 7.5297 -7.4228 2.1594 42 1 5.7559 -7.3138 2.0625 43 1 6.7173 -7.5220 0.5788 44 1 6.8434 -3.8124 2.7047 45 1 5.8296 -5.1472 3.3042 46 1 7.6031 -5.2665 3.3951 47 1 5.3802 -5.7296 -0.2145 48 1 4.7182 -4.9413 1.2340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089340460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:22 Heat of formation + Delta-G solvation = 38.905541 kcal Electronic energy + Delta-G solvation = -28441.658011 eV Core-core repulsion = 24725.980723 eV Total energy + Delta-G solvation = -3715.677288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33783 -39.66941 -38.06954 -34.74334 -34.42451 -32.96144 -32.18068 -31.36404 -30.53567 -27.90565 -27.20455 -26.70480 -25.53439 -23.77997 -22.92457 -21.63507 -20.90039 -20.33923 -19.95432 -18.80186 -17.70990 -16.71939 -16.01793 -15.86532 -15.72021 -15.08257 -14.43868 -14.33188 -14.16559 -13.95095 -13.66334 -13.52195 -13.46177 -13.23246 -12.97116 -12.75555 -12.58039 -12.37988 -11.90933 -11.70436 -11.48306 -11.26441 -10.92955 -10.86471 -10.72987 -10.62959 -10.50798 -10.33782 -10.26892 -10.07332 -10.06100 -9.74905 -9.64512 -9.52530 -9.27214 -8.80422 -8.57199 -8.32530 -6.71925 -5.80848 -3.18721 1.23774 2.66979 2.70641 3.31513 3.35644 3.44144 3.44866 3.47056 4.13303 4.49580 4.65073 4.89859 5.09675 5.14203 5.20104 5.34261 5.37985 5.45304 5.47655 5.54815 5.58150 5.66771 5.83409 5.95329 6.03054 6.11578 6.24254 6.27589 6.33103 6.41237 6.43759 6.53761 6.56878 6.69477 6.76625 6.86130 6.94799 6.99188 7.01069 7.05088 7.19386 7.23346 7.54546 7.64666 7.72215 7.80642 7.92836 8.33955 8.41351 9.17585 9.85852 10.39297 11.26246 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.003491 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.861463 B = 8019.541550 C = 8656.902191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.230 3.770 3 N -0.496 5.496 4 C 0.065 3.935 5 C -0.081 4.081 6 C 0.590 3.410 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.146 3.854 10 H 0.089 0.911 11 C -0.132 4.132 12 C 0.168 3.832 13 N -0.585 5.585 14 C -0.241 4.241 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.897 3.103 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.166 3.834 23 C -0.089 4.089 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.101 4.101 27 N -0.552 5.552 28 H 0.421 0.579 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.387 0.613 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.010 0.990 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 6.671 7.836 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.217 5.217 4 C -0.089 4.089 5 C -0.197 4.197 6 C 0.375 3.625 7 O -0.399 6.399 8 N -0.366 5.366 9 C 0.043 3.957 10 H 0.107 0.893 11 C -0.172 4.172 12 C 0.044 3.956 13 N -0.305 5.305 14 C -0.371 4.371 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.727 3.273 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.036 3.964 23 C -0.093 4.093 24 C -0.186 4.186 25 C -0.194 4.194 26 C -0.139 4.139 27 N -0.157 5.157 28 H 0.259 0.741 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.219 0.781 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.109 7.810 7.638 16.308 hybrid contribution -0.096 -2.298 -0.595 2.376 sum -12.204 5.512 7.043 15.130 Atomic orbital electron populations 1.20285 0.84364 1.04427 1.04014 1.23434 0.95833 0.81653 1.02416 1.70180 1.02211 1.28232 1.21066 1.22640 0.94637 0.91379 1.00208 1.21400 0.83753 0.96197 1.18331 1.16831 0.86786 0.81819 0.77063 1.90859 1.25690 1.73159 1.50217 1.46194 1.10236 1.05511 1.74626 1.20608 0.85634 0.90027 0.99417 0.89280 1.21364 1.01334 1.01877 0.92615 1.20094 0.91454 0.86461 0.97552 1.44256 1.78220 1.08990 0.99051 1.19158 1.24453 0.94932 0.98551 0.91579 1.24855 0.96705 0.98554 0.99473 1.69950 1.24264 1.44339 1.16068 0.86390 0.79831 0.81550 0.79546 1.21705 1.21742 1.20689 1.20512 0.92758 0.97459 0.85654 1.21931 0.98452 0.95251 0.93629 1.21742 0.99070 0.95364 1.02401 1.21854 1.00474 1.00161 0.96875 1.21788 0.96799 0.95778 0.99511 1.43251 1.06216 1.10173 1.56084 0.74084 0.89651 0.90484 0.88746 0.79920 0.78091 0.95249 0.87976 0.97202 0.89060 0.93870 0.94785 0.95257 0.93854 0.94884 0.90893 0.93334 0.93831 0.93200 0.89975 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.34 8.12 -155.61 -1.26 1.07 16 3 N -0.50 -6.54 11.20 -10.58 -0.12 -6.66 16 4 C 0.06 0.90 11.66 -17.48 -0.20 0.69 16 5 C -0.08 -1.09 7.07 -82.15 -0.58 -1.67 16 6 C 0.59 9.49 7.79 -12.81 -0.10 9.40 16 7 O -0.52 -10.40 16.55 5.20 0.09 -10.31 16 8 N -0.72 -10.60 4.94 -56.66 -0.28 -10.88 16 9 C 0.15 2.60 2.16 -69.53 -0.15 2.45 16 10 H 0.09 1.78 5.16 -51.93 -0.27 1.51 16 11 C -0.13 -2.78 4.75 -30.12 -0.14 -2.93 16 12 C 0.17 3.92 5.24 -5.21 -0.03 3.90 16 13 N -0.58 -13.67 2.60 -175.08 -0.46 -14.13 16 14 C -0.24 -6.16 8.94 -15.06 -0.13 -6.29 16 15 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 16 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 17 N -0.90 -23.79 9.42 55.49 0.52 -23.27 16 18 Si 0.90 20.93 29.60 -169.99 -5.03 15.90 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.17 3.35 4.00 -4.66 -0.02 3.33 16 23 C -0.09 -1.53 0.76 -152.54 -0.12 -1.65 16 24 C -0.13 -2.22 8.28 37.15 0.31 -1.91 16 25 C -0.14 -2.01 8.20 37.16 0.30 -1.71 16 26 C -0.10 -1.73 4.15 -27.19 -0.11 -1.84 16 27 N -0.55 -5.43 6.07 -7.02 -0.04 -5.47 16 28 H 0.42 2.79 8.32 -40.82 -0.34 2.45 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.39 4.50 7.77 -40.82 -0.32 4.19 16 34 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 35 H 0.10 2.39 5.29 -51.93 -0.27 2.12 16 36 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 37 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 38 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 40 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 41 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.48 7.45 -51.93 -0.39 1.10 16 44 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 45 H 0.04 0.59 8.12 -51.93 -0.42 0.16 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.65 6.66 -51.92 -0.35 1.31 16 48 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.37 372.10 -9.22 -39.58 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.56 Total: 6.84 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.95 Total: 2.78 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.37 Total: -60.40 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.37 -9.22 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089340460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.489 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds