Wall clock time and date at job start Tue Mar 31 2020 13:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30858 * 125.41603 * 2 1 4 4 C 1.33322 * 109.68624 * 179.97438 * 3 2 1 5 5 C 1.36658 * 107.78644 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84552 * 180.02562 * 5 4 3 7 7 O 1.21679 * 119.99834 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00056 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99998 * 180.02562 * 8 6 5 10 10 H 1.08995 * 108.44780 * 327.30157 * 9 8 6 11 11 C 1.47089 * 108.51375 * 84.99888 * 9 8 6 12 12 C 1.54862 * 110.32376 * 184.05970 * 11 9 8 13 13 N 1.44582 * 109.59558 * 288.72808 * 12 11 9 14 14 C 1.36934 * 118.64761 * 270.70789 * 13 12 11 15 15 H 1.08001 * 120.00855 * 136.24228 * 14 13 12 16 16 C 1.38818 * 119.99738 * 316.24530 * 14 13 12 17 17 N 1.31616 * 120.00451 * 158.88372 * 16 14 13 18 18 Si 1.86804 * 119.99747 * 338.88050 * 16 14 13 19 19 H 1.48496 * 109.47170 * 95.27181 * 18 16 14 20 20 H 1.48500 * 109.46992 * 215.27061 * 18 16 14 21 21 H 1.48501 * 109.47143 * 335.26830 * 18 16 14 22 22 C 1.47610 * 122.71383 * 90.72370 * 13 12 11 23 23 C 1.53950 * 112.14069 * 317.87155 * 22 13 12 24 24 C 1.52998 * 109.36779 * 79.62569 * 23 22 13 25 25 C 1.53000 * 109.36228 * 199.36770 * 23 22 13 26 26 C 1.50882 * 110.09578 * 319.43370 * 23 22 13 27 27 N 1.34492 * 125.42458 * 179.68817 * 2 1 3 28 28 H 0.97004 * 126.46614 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46737 * 90.02994 * 1 2 3 30 30 H 1.08997 * 109.47172 * 330.03063 * 1 2 3 31 31 H 1.08999 * 109.46803 * 210.02202 * 1 2 3 32 32 H 1.07997 * 126.10403 * 180.02562 * 4 3 2 33 33 H 0.97008 * 119.99346 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.32914 * 304.31551 * 11 9 8 35 35 H 1.09001 * 109.32987 * 63.96793 * 11 9 8 36 36 H 1.08992 * 109.45301 * 48.76460 * 12 11 9 37 37 H 1.09000 * 109.45204 * 168.72006 * 12 11 9 38 38 H 0.96997 * 120.00078 * 179.97438 * 17 16 14 39 39 H 1.09006 * 108.94487 * 78.55140 * 22 13 12 40 40 H 1.08990 * 108.94829 * 197.26884 * 22 13 12 41 41 H 1.09005 * 109.47233 * 60.19299 * 24 23 22 42 42 H 1.08993 * 109.47495 * 180.19772 * 24 23 22 43 43 H 1.09009 * 109.47232 * 300.19879 * 24 23 22 44 44 H 1.08988 * 109.47332 * 60.00283 * 25 23 22 45 45 H 1.09000 * 109.46716 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.47279 * 299.99440 * 25 23 22 47 47 H 1.08999 * 109.48808 * 331.91889 * 26 23 22 48 48 H 1.09001 * 109.48465 * 211.85035 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5977 -0.6607 0.0015 6 6 4.8030 -1.4981 0.0029 7 8 5.9039 -0.9797 0.0029 8 7 4.6905 -2.8412 0.0043 9 6 5.8936 -3.6770 0.0062 10 1 6.6738 -3.1598 -0.5522 11 6 6.3453 -3.8421 1.3963 12 6 7.6746 -4.6355 1.4392 13 7 7.4249 -6.0187 1.1003 14 6 7.1100 -6.8943 2.1050 15 1 6.3099 -7.6069 1.9694 16 6 7.8193 -6.8658 3.2980 17 7 7.2920 -7.3785 4.3895 18 14 9.5222 -6.1000 3.3541 19 1 9.4154 -4.6880 3.8015 20 1 10.3745 -6.8575 4.3053 21 1 10.1303 -6.1456 2.0001 22 6 7.4956 -6.5262 -0.2840 23 6 6.8447 -5.5598 -1.2902 24 6 7.8188 -4.4226 -1.6045 25 6 6.5146 -6.3157 -2.5788 26 6 5.5754 -4.9856 -0.7108 27 7 2.2865 -1.0959 0.0060 28 1 1.9850 -2.0179 0.0113 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5133 31 1 -0.3633 -0.8898 0.5142 32 1 4.3977 1.3724 0.0011 33 1 3.8128 -3.2543 0.0047 34 1 6.4965 -2.8606 1.8455 35 1 5.5862 -4.3841 1.9604 36 1 8.3761 -4.2075 0.7233 37 1 8.0989 -4.5788 2.4416 38 1 7.7878 -7.3589 5.2230 39 1 8.5416 -6.6684 -0.5558 40 1 6.9832 -7.4867 -0.3355 41 1 8.7308 -4.8344 -2.0369 42 1 7.3583 -3.7354 -2.3142 43 1 8.0616 -3.8879 -0.6861 44 1 5.8242 -7.1291 -2.3562 45 1 6.0540 -5.6329 -3.2927 46 1 7.4309 -6.7234 -3.0058 47 1 5.1464 -5.6937 -0.0019 48 1 4.8624 -4.7965 -1.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089340462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:27 Heat of formation + Delta-G solvation = 51.220994 kcal Electronic energy + Delta-G solvation = -28370.889837 eV Core-core repulsion = 24655.746587 eV Total energy + Delta-G solvation = -3715.143249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42030 -40.20204 -38.48506 -35.01516 -34.62123 -33.06041 -32.27124 -31.65764 -30.75965 -28.04095 -27.37085 -27.13812 -25.76449 -24.36417 -23.15499 -21.87340 -21.07895 -20.49762 -19.93536 -18.98839 -17.87704 -16.71468 -16.43313 -16.12829 -15.86959 -15.27193 -14.94581 -14.59672 -14.36443 -14.08880 -14.00896 -13.61877 -13.53822 -13.26551 -13.03450 -12.87515 -12.79755 -12.70332 -12.42730 -12.01444 -11.88816 -11.70044 -11.55121 -11.03081 -10.83026 -10.72383 -10.60039 -10.49927 -10.40945 -10.34833 -10.11991 -9.88363 -9.79938 -9.62311 -9.46084 -8.97105 -8.63814 -8.49177 -6.71441 -6.03322 -3.50699 1.14484 2.59083 2.62996 3.16053 3.32508 3.32830 3.46406 3.52866 4.07146 4.51243 4.57837 4.78867 4.92761 4.94246 5.03977 5.09513 5.12727 5.22426 5.28311 5.35921 5.48844 5.49891 5.58589 5.66263 5.70799 5.83362 5.90848 5.99167 6.06387 6.08282 6.12665 6.19236 6.34466 6.35926 6.42860 6.46522 6.52761 6.68035 6.69149 6.77852 6.82013 6.85682 6.92447 7.06909 7.46396 7.71434 8.09125 8.17659 8.38897 9.03575 9.69421 10.09774 11.11659 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003658 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.327092 B = 7652.076604 C = 8333.642474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.233 3.767 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.084 4.084 6 C 0.591 3.409 7 O -0.526 6.526 8 N -0.724 5.724 9 C 0.142 3.858 10 H 0.099 0.901 11 C -0.152 4.152 12 C 0.146 3.854 13 N -0.601 5.601 14 C -0.276 4.276 15 H 0.073 0.927 16 C 0.043 3.957 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.285 1.285 20 H -0.301 1.301 21 H -0.268 1.268 22 C 0.158 3.842 23 C -0.078 4.078 24 C -0.159 4.159 25 C -0.134 4.134 26 C -0.102 4.102 27 N -0.551 5.551 28 H 0.421 0.579 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.388 0.612 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.263 0.737 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 9.459 -12.629 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 N -0.217 5.217 4 C -0.087 4.087 5 C -0.200 4.200 6 C 0.377 3.623 7 O -0.402 6.402 8 N -0.373 5.373 9 C 0.040 3.960 10 H 0.116 0.884 11 C -0.193 4.193 12 C 0.019 3.981 13 N -0.323 5.323 14 C -0.405 4.405 15 H 0.091 0.909 16 C -0.159 4.159 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.192 1.192 22 C 0.033 3.967 23 C -0.080 4.080 24 C -0.215 4.215 25 C -0.192 4.192 26 C -0.141 4.141 27 N -0.157 5.157 28 H 0.260 0.740 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.201 0.799 33 H 0.220 0.780 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.990 10.567 -12.471 19.697 hybrid contribution 0.622 -1.112 0.322 1.314 sum -10.368 9.455 -12.149 18.561 Atomic orbital electron populations 1.20299 0.84284 1.04598 1.03993 1.23455 0.95875 0.81609 1.02119 1.70192 1.02189 1.28231 1.21072 1.22650 0.94678 0.91347 0.99993 1.21342 0.83760 0.96163 1.18740 1.16848 0.86848 0.81790 0.76854 1.90849 1.25742 1.73196 1.50440 1.46381 1.10493 1.05580 1.74856 1.20446 0.86283 0.90894 0.98344 0.88366 1.21757 1.01950 1.00224 0.95354 1.21179 0.93179 0.84828 0.98936 1.43832 1.82302 1.03643 1.02548 1.18742 1.13275 1.15502 0.92949 0.90899 1.25580 0.97422 0.96940 0.95933 1.69858 1.37187 1.47661 0.99269 0.86913 0.86759 0.78013 0.77748 1.21250 1.22865 1.19228 1.21358 0.96879 0.94716 0.83752 1.20678 0.95149 0.96453 0.95731 1.22406 0.98832 0.98266 1.02034 1.21836 1.01211 0.99802 0.96305 1.21306 0.97468 0.96181 0.99097 1.43252 1.06175 1.10215 1.56070 0.74038 0.89647 0.88674 0.90369 0.79925 0.77963 0.92711 0.91106 0.93591 0.92776 0.92706 0.96233 0.92358 0.93028 0.93326 0.90460 0.92643 0.93266 0.92756 0.90052 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.23 2.23 8.12 -155.62 -1.26 0.97 16 3 N -0.50 -6.25 11.20 -10.58 -0.12 -6.37 16 4 C 0.07 0.87 11.66 -17.48 -0.20 0.67 16 5 C -0.08 -1.06 7.08 -82.14 -0.58 -1.64 16 6 C 0.59 8.71 7.63 -12.81 -0.10 8.61 16 7 O -0.53 -9.60 16.41 5.21 0.09 -9.51 16 8 N -0.72 -9.56 4.88 -58.11 -0.28 -9.84 16 9 C 0.14 2.23 1.79 -70.99 -0.13 2.10 16 10 H 0.10 1.65 3.95 -51.93 -0.20 1.44 16 11 C -0.15 -2.88 5.19 -28.59 -0.15 -3.03 16 12 C 0.15 3.11 4.41 -4.08 -0.02 3.09 16 13 N -0.60 -13.40 1.74 -172.09 -0.30 -13.70 16 14 C -0.28 -7.35 9.65 -15.06 -0.15 -7.49 16 15 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 16 C 0.04 1.19 5.25 -17.43 -0.09 1.10 16 17 N -0.90 -26.85 13.97 55.49 0.78 -26.07 16 18 Si 0.88 22.11 25.26 -169.99 -4.29 17.81 16 19 H -0.28 -7.10 6.74 56.52 0.38 -6.72 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.16 2.96 5.14 -2.94 -0.02 2.94 16 23 C -0.08 -1.16 0.75 -155.08 -0.12 -1.28 16 24 C -0.16 -2.32 6.76 37.16 0.25 -2.07 16 25 C -0.13 -1.64 8.15 37.16 0.30 -1.33 16 26 C -0.10 -1.49 4.38 -28.02 -0.12 -1.61 16 27 N -0.55 -5.02 6.07 -7.02 -0.04 -5.07 16 28 H 0.42 2.48 8.32 -40.82 -0.34 2.14 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.39 3.97 7.86 -40.82 -0.32 3.65 16 34 H 0.05 1.07 7.95 -51.93 -0.41 0.65 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.05 0.92 5.22 -51.93 -0.27 0.65 16 37 H 0.05 1.30 3.80 -51.93 -0.20 1.10 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.02 0.38 7.98 -51.93 -0.41 -0.04 16 40 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 41 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 43 H 0.08 1.27 3.16 -51.92 -0.16 1.11 16 44 H 0.05 0.66 8.12 -51.94 -0.42 0.24 16 45 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16 48 H 0.05 0.68 7.63 -51.93 -0.40 0.28 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -33.25 365.35 -7.97 -41.22 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.30 Total: 4.97 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.00 Total: 1.04 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.03 Total: -61.04 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.29 Total: 17.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.25 -7.97 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089340462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.442 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds