Wall clock time and date at job start Tue Mar 31 2020 13:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30852 * 125.41946 * 2 1 4 4 C 1.33312 * 109.68647 * 179.97438 * 3 2 1 5 5 C 1.36661 * 107.78857 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84850 * 180.02562 * 5 4 3 7 7 O 1.21674 * 119.99958 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99808 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47219 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.58607 * 299.95329 * 10 9 8 12 12 C 1.53194 * 109.58621 * 179.66439 * 10 9 8 13 13 C 1.53076 * 109.29092 * 185.71940 * 12 10 9 14 14 C 1.53037 * 109.65592 * 61.16019 * 13 12 10 15 15 C 1.53005 * 109.49684 * 178.74609 * 14 13 12 16 16 C 1.52996 * 109.50265 * 58.64946 * 14 13 12 17 17 C 1.53189 * 109.31171 * 298.69169 * 14 13 12 18 18 N 1.46928 * 108.77601 * 54.64402 * 17 14 13 19 19 C 1.36935 * 120.63508 * 126.41187 * 18 17 14 20 20 H 1.08003 * 119.99980 * 211.17656 * 19 18 17 21 21 C 1.38811 * 119.99739 * 31.17315 * 19 18 17 22 22 N 1.31618 * 120.00361 * 13.75762 * 21 19 18 23 23 Si 1.86804 * 119.99753 * 193.74980 * 21 19 18 24 24 H 1.48503 * 109.46795 * 90.00413 * 23 21 19 25 25 H 1.48493 * 109.47343 * 210.00381 * 23 21 19 26 26 H 1.48504 * 109.46995 * 330.00757 * 23 21 19 27 27 N 1.34494 * 125.41344 * 179.97438 * 2 1 3 28 28 H 0.96993 * 126.47855 * 359.75712 * 27 2 1 29 29 H 1.08999 * 109.47483 * 270.02549 * 1 2 3 30 30 H 1.09006 * 109.47158 * 30.02757 * 1 2 3 31 31 H 1.08999 * 109.47685 * 150.02730 * 1 2 3 32 32 H 1.08003 * 126.11042 * 180.02562 * 4 3 2 33 33 H 0.96997 * 120.00405 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.47009 * 300.00474 * 9 8 6 35 35 H 1.09003 * 109.46895 * 59.99757 * 9 8 6 36 36 H 1.09000 * 109.49670 * 305.53265 * 12 10 9 37 37 H 1.08998 * 109.49404 * 65.63161 * 12 10 9 38 38 H 1.08994 * 109.35034 * 301.13033 * 13 12 10 39 39 H 1.09002 * 109.44688 * 181.24538 * 13 12 10 40 40 H 1.08997 * 109.47455 * 179.83657 * 15 14 13 41 41 H 1.09009 * 109.46921 * 299.83614 * 15 14 13 42 42 H 1.09004 * 109.47348 * 59.83002 * 15 14 13 43 43 H 1.09004 * 109.46862 * 300.15871 * 16 14 13 44 44 H 1.09003 * 109.47461 * 60.15808 * 16 14 13 45 45 H 1.09000 * 109.47587 * 180.15924 * 16 14 13 46 46 H 1.08994 * 109.58788 * 294.85036 * 17 14 13 47 47 H 1.09011 * 109.70401 * 174.49501 * 17 14 13 48 48 H 0.96999 * 120.00293 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5485 0.7049 0.0006 5 6 3.5976 -0.6609 0.0015 6 6 4.8028 -1.4983 0.0029 7 8 5.9037 -0.9801 0.0029 8 7 4.6902 -2.8414 0.0043 9 6 5.8933 -3.6774 0.0051 10 6 5.4890 -5.1530 0.0072 11 1 4.8982 -5.3687 0.8974 12 6 6.7453 -6.0296 -0.0004 13 6 6.3365 -7.4979 -0.1422 14 6 5.5946 -7.7002 -1.4653 15 6 5.2152 -9.1746 -1.6178 16 6 6.4985 -7.2822 -2.6268 17 6 4.3253 -6.8426 -1.4707 18 7 4.6958 -5.4480 -1.1939 19 6 4.3087 -4.4423 -2.0388 20 1 4.9319 -3.5685 -2.1596 21 6 3.1153 -4.5459 -2.7402 22 7 2.2308 -5.4603 -2.4027 23 14 2.7645 -3.3875 -4.1630 24 1 3.2700 -3.9859 -5.4247 25 1 1.3002 -3.1664 -4.2720 26 1 3.4448 -2.0893 -3.9236 27 7 2.2863 -1.0961 0.0005 28 1 1.9849 -2.0180 0.0042 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.3978 1.3721 0.0011 33 1 3.8126 -3.2546 0.0039 34 1 6.4849 -3.4635 -0.8851 35 1 6.4849 -3.4618 0.8949 36 1 7.3804 -5.7479 -0.8403 37 1 7.2917 -5.8902 0.9324 38 1 5.6834 -7.7726 0.6861 39 1 7.2273 -8.1259 -0.1257 40 1 4.6843 -9.3178 -2.5589 41 1 6.1187 -9.7846 -1.6139 42 1 4.5725 -9.4721 -0.7891 43 1 6.7693 -6.2321 -2.5166 44 1 7.4015 -7.8927 -2.6226 45 1 5.9686 -7.4238 -3.5688 46 1 3.6406 -7.1985 -0.7011 47 1 3.8432 -6.9058 -2.4464 48 1 1.3967 -5.5325 -2.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089618572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:17 Heat of formation + Delta-G solvation = 27.061774 kcal Electronic energy + Delta-G solvation = -28807.520859 eV Core-core repulsion = 25091.329987 eV Total energy + Delta-G solvation = -3716.190872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96590 -39.23418 -38.29614 -35.19150 -33.37217 -32.72856 -32.04518 -31.59120 -30.10612 -28.02195 -26.81217 -26.66327 -25.59871 -23.86000 -22.45031 -21.99152 -20.61369 -20.20567 -19.86520 -18.23939 -17.98997 -16.50823 -15.76814 -15.55161 -15.41999 -15.28568 -14.33392 -14.15192 -13.94315 -13.75652 -13.72921 -13.52893 -13.35221 -13.16672 -12.98877 -12.68100 -12.44307 -12.41512 -12.26146 -11.73252 -11.46761 -11.37701 -11.22012 -10.97006 -10.89049 -10.71131 -10.49408 -10.22435 -10.19591 -10.15132 -9.96693 -9.87805 -9.65306 -9.49135 -9.34166 -8.72787 -8.48087 -8.14742 -6.77159 -5.97282 -3.44137 1.60381 3.02273 3.10535 3.22660 3.31119 3.36739 3.66820 3.81471 4.31030 4.47994 5.04347 5.09025 5.18106 5.31143 5.37802 5.39666 5.42230 5.46214 5.53370 5.67899 5.70147 5.81045 5.86634 5.94097 6.02932 6.06078 6.11084 6.16997 6.25915 6.29512 6.37962 6.41116 6.42022 6.45508 6.58815 6.75487 6.83610 6.85155 6.92303 7.03179 7.05382 7.29533 7.39927 7.56844 7.67187 7.98512 8.17239 8.27970 8.66731 9.03698 9.64908 10.23317 11.08239 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.004753 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.178621 B = 5889.869948 C = 6890.411316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.227 3.773 3 N -0.500 5.500 4 C 0.055 3.945 5 C -0.073 4.073 6 C 0.586 3.414 7 O -0.549 6.549 8 N -0.691 5.691 9 C 0.135 3.865 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.094 4.094 15 C -0.134 4.134 16 C -0.124 4.124 17 C 0.188 3.812 18 N -0.585 5.585 19 C -0.249 4.249 20 H 0.070 0.930 21 C 0.010 3.990 22 N -0.898 5.898 23 Si 0.885 3.115 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 N -0.543 5.543 28 H 0.427 0.573 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.180 0.820 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.044 0.956 46 H 0.017 0.983 47 H 0.085 0.915 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -0.354 5.625 5.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 N -0.221 5.221 4 C -0.098 4.098 5 C -0.190 4.190 6 C 0.372 3.628 7 O -0.428 6.428 8 N -0.341 5.341 9 C 0.011 3.989 10 C 0.053 3.947 11 H 0.048 0.952 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.096 4.096 15 C -0.192 4.192 16 C -0.182 4.182 17 C 0.062 3.938 18 N -0.308 5.308 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.189 4.189 22 N -0.542 5.542 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.203 1.203 27 N -0.148 5.148 28 H 0.266 0.734 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.198 0.802 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.104 0.896 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.303 0.769 5.551 5.612 hybrid contribution -0.502 -1.079 -0.999 1.554 sum -0.199 -0.310 4.552 4.567 Atomic orbital electron populations 1.20271 0.84616 1.04499 1.03727 1.23344 0.95774 0.81749 1.02782 1.70121 1.02165 1.28330 1.21445 1.22531 0.94571 0.91334 1.01389 1.21313 0.83977 0.95957 1.17713 1.16843 0.86670 0.82018 0.77277 1.90782 1.25863 1.73692 1.52453 1.45903 1.11294 1.04710 1.72179 1.21338 0.86719 0.89812 1.01015 1.20741 0.92056 0.90815 0.91078 0.95152 1.22006 0.98326 0.95910 1.00729 1.21410 0.98792 0.95695 0.97414 1.21230 0.98944 0.95027 0.94413 1.21762 1.00096 0.96066 1.01227 1.21702 0.97467 1.01555 0.97447 1.20806 0.90050 0.81639 1.01305 1.44040 1.61443 1.03002 1.22352 1.19216 1.00560 0.99851 1.18253 0.91273 1.25027 0.95418 0.98357 1.00128 1.70002 1.07893 1.35847 1.40461 0.86549 0.77156 0.81124 0.83706 1.21199 1.21732 1.20307 1.43316 1.06162 1.10584 1.54770 0.73353 0.89861 0.88964 0.90305 0.80248 0.75378 0.91311 0.92377 0.91564 0.93004 0.92974 0.93580 0.93047 0.93926 0.93345 0.91612 0.94998 0.93660 0.96505 0.89634 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.51 36.01 0.38 -0.35 16 2 C 0.23 3.33 8.12 -155.62 -1.26 2.06 16 3 N -0.50 -8.34 11.20 -10.59 -0.12 -8.46 16 4 C 0.06 0.95 11.66 -17.48 -0.20 0.75 16 5 C -0.07 -1.28 7.08 -82.14 -0.58 -1.86 16 6 C 0.59 11.24 7.79 -12.81 -0.10 11.14 16 7 O -0.55 -11.79 16.90 5.21 0.09 -11.71 16 8 N -0.69 -12.63 3.84 -61.59 -0.24 -12.87 16 9 C 0.13 2.41 4.43 -4.04 -0.02 2.39 16 10 C 0.16 2.86 3.01 -67.60 -0.20 2.66 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.13 -2.04 5.04 -26.59 -0.13 -2.17 16 13 C -0.10 -1.47 4.70 -26.67 -0.13 -1.60 16 14 C -0.09 -1.61 0.77 -154.39 -0.12 -1.73 16 15 C -0.13 -2.02 8.48 37.16 0.32 -1.70 16 16 C -0.12 -2.14 7.99 37.16 0.30 -1.84 16 17 C 0.19 3.90 3.95 -3.71 -0.01 3.88 16 18 N -0.58 -12.18 2.41 -164.77 -0.40 -12.57 16 19 C -0.25 -5.76 6.96 -15.06 -0.10 -5.87 16 20 H 0.07 1.69 5.86 -52.48 -0.31 1.39 16 21 C 0.01 0.24 4.97 -17.43 -0.09 0.16 16 22 N -0.90 -22.57 11.22 55.49 0.62 -21.95 16 23 Si 0.88 20.39 29.58 -169.99 -5.03 15.36 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 N -0.54 -8.32 6.07 -7.02 -0.04 -8.36 16 28 H 0.43 5.97 8.32 -40.82 -0.34 5.63 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 33 H 0.41 7.56 6.63 -40.82 -0.27 7.29 16 34 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.08 6.35 -51.93 -0.33 0.75 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.23 5.98 -51.93 -0.31 0.92 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 2.06 6.19 -51.92 -0.32 1.74 16 48 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -27.92 375.11 -9.16 -37.08 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.74 Total: 11.90 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.96 Total: 5.92 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.17 Total: -64.21 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.92 -9.16 -37.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089618572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.142 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds