Wall clock time and date at job start Tue Mar 31 2020 12:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34670 * 125.98965 * 2 1 4 4 N 1.36874 * 106.82132 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.39932 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46849 * 292.77981 * 5 4 3 7 7 C 1.52998 * 109.47368 * 52.78008 * 5 4 3 8 8 C 1.50703 * 109.47213 * 172.78386 * 5 4 3 9 9 O 1.21281 * 120.00366 * 114.94469 * 8 5 4 10 10 N 1.34780 * 119.99427 * 294.94210 * 8 5 4 11 11 C 1.47423 * 125.65008 * 355.96046 * 10 8 5 12 12 C 1.55135 * 104.72066 * 155.81636 * 11 10 8 13 13 C 1.55154 * 101.48555 * 37.29297 * 12 11 10 14 14 C 1.47026 * 125.64377 * 176.26333 * 10 8 5 15 15 H 1.08993 * 109.88542 * 300.43965 * 14 10 8 16 16 C 1.52995 * 109.88114 * 61.61112 * 14 10 8 17 17 N 1.46504 * 109.47008 * 279.35230 * 16 14 10 18 18 C 1.36939 * 120.00208 * 172.41420 * 17 16 14 19 19 H 1.08001 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99876 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00496 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46917 * 59.99848 * 22 20 18 24 24 H 1.48500 * 109.47290 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46994 * 300.00095 * 22 20 18 26 26 C 1.35044 * 107.20554 * 359.97438 * 4 3 2 27 27 N 1.30508 * 108.69686 * 359.76497 * 26 4 3 28 28 H 1.08999 * 109.46986 * 90.00575 * 1 2 3 29 29 H 1.08998 * 109.47113 * 210.00085 * 1 2 3 30 30 H 1.08993 * 109.47156 * 330.00408 * 1 2 3 31 31 H 1.08000 * 126.58847 * 359.93878 * 3 2 1 32 32 H 1.08999 * 109.47381 * 59.99765 * 6 5 4 33 33 H 1.08996 * 109.47478 * 180.02562 * 6 5 4 34 34 H 1.09011 * 109.47240 * 300.00234 * 6 5 4 35 35 H 1.08998 * 109.47294 * 62.84364 * 7 5 4 36 36 H 1.08994 * 109.46919 * 182.84683 * 7 5 4 37 37 H 1.09000 * 109.46872 * 302.84427 * 7 5 4 38 38 H 1.08995 * 110.36430 * 274.74005 * 11 10 8 39 39 H 1.08994 * 110.36811 * 37.06596 * 11 10 8 40 40 H 1.09001 * 111.18991 * 279.18587 * 12 11 10 41 41 H 1.09003 * 110.93408 * 155.28701 * 12 11 10 42 42 H 1.09002 * 110.72078 * 205.96359 * 13 12 11 43 43 H 1.09000 * 110.87041 * 82.76941 * 13 12 11 44 44 H 1.08995 * 109.47514 * 39.35168 * 16 14 10 45 45 H 1.09002 * 109.47320 * 159.35410 * 16 14 10 46 46 H 0.97003 * 119.99703 * 352.40716 * 17 16 14 47 47 H 0.96995 * 120.00110 * 179.97438 * 21 20 18 48 48 H 1.08001 * 125.65492 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6402 0.0006 5 6 4.7996 1.4686 0.0013 6 6 4.9051 2.2178 -1.3285 7 6 4.7264 2.4765 1.1501 8 6 6.0109 0.5900 0.1803 9 8 6.8281 0.4949 -0.7108 10 7 6.1860 -0.0900 1.3307 11 6 5.3209 -0.0018 2.5212 12 6 5.5377 -1.3450 3.2664 13 6 7.0525 -1.5865 3.0336 14 6 7.2750 -1.0379 1.6084 15 1 7.2476 -1.8554 0.8881 16 6 8.6231 -0.3184 1.5325 17 7 9.0304 -0.1912 0.1310 18 6 10.1299 0.5562 -0.1974 19 1 10.6965 1.0522 0.5767 20 6 10.5161 0.6762 -1.5253 21 7 9.8253 0.0721 -2.4689 22 14 12.0154 1.6963 -1.9734 23 1 13.2146 1.1359 -1.3002 24 1 12.2134 1.6655 -3.4448 25 1 11.8099 3.0991 -1.5313 26 6 3.5450 -0.7094 0.0015 27 7 2.2952 -1.0852 0.0066 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9751 2.1201 -0.0009 32 1 4.0290 2.8532 -1.4580 33 1 5.8043 2.8338 -1.3282 34 1 4.9572 1.4997 -2.1470 35 1 4.7021 1.9431 2.1004 36 1 5.6013 3.1258 1.1201 37 1 3.8235 3.0785 1.0482 38 1 5.6239 0.8361 3.1489 39 1 4.2773 0.1030 2.2248 40 1 4.9420 -2.1426 2.8223 41 1 5.3174 -1.2409 4.3289 42 1 7.2847 -2.6506 3.0779 43 1 7.6499 -1.0326 3.7577 44 1 8.5312 0.6732 1.9755 45 1 9.3724 -0.8921 2.0780 46 1 8.5213 -0.6365 -0.5644 47 1 10.0950 0.1563 -3.3967 48 1 4.4005 -1.3686 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:50 Heat of formation + Delta-G solvation = 66.631718 kcal Electronic energy + Delta-G solvation = -29269.221966 eV Core-core repulsion = 25554.746975 eV Total energy + Delta-G solvation = -3714.474990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.38887 -40.06697 -37.58519 -35.73387 -34.19385 -31.89577 -31.58355 -31.27050 -30.41512 -28.86217 -27.46560 -26.90554 -25.15727 -23.98335 -22.63651 -22.05932 -21.34655 -20.38651 -20.11127 -18.57436 -17.90893 -16.86437 -16.37337 -15.76566 -15.27121 -14.94136 -14.61150 -14.39462 -14.01845 -13.90969 -13.66238 -13.49697 -13.40121 -13.08371 -13.07949 -12.93576 -12.52338 -12.46941 -12.42371 -12.30436 -12.17913 -11.97646 -11.67604 -11.55120 -11.47072 -11.17149 -10.97455 -10.72374 -10.65108 -10.51941 -9.98990 -9.91511 -9.58907 -9.52921 -9.22326 -8.73394 -8.32546 -8.30685 -6.66505 -5.54486 -2.81709 2.06511 2.32955 3.00287 3.13986 3.29013 3.51029 3.55116 3.56529 4.19948 4.50155 4.59144 4.60869 4.62879 4.72350 4.84240 4.89633 4.94188 5.19053 5.26060 5.26769 5.33776 5.36147 5.47373 5.49988 5.61001 5.64060 5.71176 5.71933 5.74198 5.80238 5.82386 5.86141 5.94547 5.96505 6.00198 6.17045 6.23234 6.28963 6.36865 6.50064 6.75786 6.77180 6.89556 7.18139 7.72473 7.81967 8.12418 8.45498 8.65154 9.74984 10.38099 10.74739 11.66831 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.004386 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.821469 B = 6382.971881 C = 7370.938405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.007 4.007 3 C -0.053 4.053 4 N -0.441 5.441 5 C 0.149 3.851 6 C -0.141 4.141 7 C -0.169 4.169 8 C 0.507 3.493 9 O -0.435 6.435 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.130 3.870 15 H 0.077 0.923 16 C 0.148 3.852 17 N -0.717 5.717 18 C -0.237 4.237 19 H 0.061 0.939 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.196 3.804 27 N -0.492 5.492 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.169 0.831 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.394 0.606 47 H 0.250 0.750 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 2.061 11.851 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.186 4.186 4 N -0.125 5.125 5 C 0.061 3.939 6 C -0.199 4.199 7 C -0.226 4.226 8 C 0.290 3.710 9 O -0.301 6.301 10 N -0.350 5.350 11 C -0.029 4.029 12 C -0.170 4.170 13 C -0.162 4.162 14 C 0.027 3.973 15 H 0.095 0.905 16 C 0.019 3.981 17 N -0.364 5.364 18 C -0.368 4.368 19 H 0.079 0.921 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.087 4.087 27 N -0.211 5.211 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.187 0.813 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.232 0.768 47 H 0.060 0.940 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.267 1.438 11.204 20.634 hybrid contribution 1.116 1.486 -0.464 1.915 sum -16.151 2.924 10.740 19.615 Atomic orbital electron populations 1.19972 0.87945 1.02267 1.01936 1.20688 0.96335 0.88613 1.07967 1.22283 0.82795 1.00293 1.13232 1.45629 1.05876 1.07401 1.53629 1.21167 0.81784 0.91389 0.99562 1.21976 1.03116 1.00605 0.94167 1.22470 1.04007 0.98677 0.97465 1.19704 0.87272 0.81351 0.82697 1.91086 1.41185 1.58606 1.39191 1.48477 1.28513 1.44611 1.13358 1.22548 0.94954 0.98089 0.87307 1.22803 0.96818 0.96854 1.00506 1.22641 0.95833 1.01857 0.95858 1.21951 0.87865 0.91390 0.96076 0.90524 1.20969 0.91009 0.96433 0.89719 1.42498 1.32525 1.60478 1.00909 1.19064 1.02966 1.23232 0.91584 0.92096 1.24653 0.98934 1.01068 0.95845 1.69701 1.40383 1.47338 0.99319 0.86423 0.83338 0.80206 0.77080 1.21545 1.21837 1.21679 1.24933 0.96898 0.82053 1.04780 1.70222 1.00208 1.30289 1.20386 0.91708 0.91418 0.91661 0.81327 0.91695 0.89487 0.90683 0.90221 0.89769 0.90971 0.91503 0.90771 0.90443 0.90144 0.89996 0.90359 0.96314 0.96405 0.76833 0.93957 0.78567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.42 36.01 0.38 -0.21 16 2 C -0.01 -0.09 7.09 -82.85 -0.59 -0.67 16 3 C -0.05 -0.61 10.50 -16.56 -0.17 -0.79 16 4 N -0.44 -5.72 1.83 -105.82 -0.19 -5.92 16 5 C 0.15 2.01 0.79 -132.97 -0.10 1.91 16 6 C -0.14 -1.98 7.93 37.16 0.29 -1.69 16 7 C -0.17 -1.80 8.17 37.16 0.30 -1.50 16 8 C 0.51 8.77 5.30 -10.98 -0.06 8.71 16 9 O -0.43 -10.02 12.65 5.56 0.07 -9.95 16 10 N -0.61 -9.07 2.47 -162.88 -0.40 -9.47 16 11 C 0.09 1.04 4.58 -2.41 -0.01 1.03 16 12 C -0.13 -1.25 7.10 -24.46 -0.17 -1.43 16 13 C -0.12 -1.39 6.40 -24.90 -0.16 -1.55 16 14 C 0.13 2.08 3.06 -66.95 -0.20 1.87 16 15 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 16 C 0.15 3.03 5.59 -4.04 -0.02 3.00 16 17 N -0.72 -18.93 4.08 -59.91 -0.24 -19.17 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.06 1.74 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -29.14 13.06 55.49 0.72 -28.41 16 22 Si 0.90 23.30 29.55 -169.99 -5.02 18.28 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C 0.20 2.86 9.86 -90.37 -0.89 1.97 16 27 N -0.49 -7.43 11.25 -10.87 -0.12 -7.55 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 1.45 7.90 -52.49 -0.41 1.03 16 32 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.23 8.05 -51.92 -0.42 0.81 16 35 H 0.08 0.80 4.16 -51.93 -0.22 0.58 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.62 7.61 -51.93 -0.40 0.22 16 38 H 0.07 0.68 7.20 -51.93 -0.37 0.31 16 39 H 0.07 0.83 5.12 -51.93 -0.27 0.56 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 44 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 45 H 0.02 0.37 8.02 -51.93 -0.42 -0.05 16 46 H 0.39 11.22 5.66 -40.82 -0.23 10.99 16 47 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.20 2.96 7.10 -52.49 -0.37 2.59 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -35.41 372.66 -8.93 -44.34 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.70 Total: 9.01 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.66 Total: 3.23 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.24 Total: -70.52 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.41 -8.93 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.973 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds