Wall clock time and date at job start Tue Mar 31 2020 12:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30835 * 125.90205 * 2 1 4 4 N 1.40091 * 108.20782 * 179.97438 * 3 2 1 5 5 H 0.96993 * 126.03601 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.91907 * 359.75839 * 4 3 2 7 7 C 1.50703 * 126.12142 * 180.24165 * 6 4 3 8 8 C 1.35313 * 107.75003 * 0.38944 * 6 4 3 9 9 C 1.50700 * 126.03839 * 179.87436 * 8 6 4 10 10 C 1.50700 * 109.47267 * 269.71626 * 9 8 6 11 11 O 1.21279 * 119.99845 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00243 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00071 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46975 * 175.12703 * 13 12 10 15 15 N 1.46499 * 110.01510 * 303.89919 * 14 13 12 16 16 C 1.36937 * 120.00357 * 301.46509 * 15 14 13 17 17 H 1.08000 * 119.99690 * 354.60637 * 16 15 14 18 18 C 1.38803 * 120.00182 * 174.60583 * 16 15 14 19 19 N 1.31620 * 120.00129 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47224 * 60.00212 * 20 18 16 22 22 H 1.48507 * 109.47179 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47153 * 299.99883 * 20 18 16 24 24 C 1.54271 * 110.02865 * 182.46061 * 14 13 12 25 25 C 1.54885 * 104.19104 * 217.10252 * 24 14 13 26 26 C 1.54888 * 102.75242 * 37.94371 * 25 24 14 27 27 C 1.53866 * 110.03152 * 65.29263 * 14 13 12 28 28 H 1.08994 * 109.47157 * 270.02790 * 1 2 3 29 29 H 1.09010 * 109.46674 * 30.02544 * 1 2 3 30 30 H 1.08996 * 109.47366 * 150.02133 * 1 2 3 31 31 H 1.08999 * 109.47089 * 270.17095 * 7 6 4 32 32 H 1.09006 * 109.47554 * 30.17544 * 7 6 4 33 33 H 1.08999 * 109.46840 * 150.17576 * 7 6 4 34 34 H 1.09003 * 109.47288 * 149.71569 * 9 8 6 35 35 H 1.09002 * 109.47414 * 29.71439 * 9 8 6 36 36 H 0.96998 * 119.99326 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.46924 * 295.12722 * 13 12 10 38 38 H 1.08997 * 109.47083 * 55.12681 * 13 12 10 39 39 H 0.97003 * 119.99666 * 121.46546 * 15 14 13 40 40 H 0.97004 * 120.00360 * 179.97438 * 19 18 16 41 41 H 1.08991 * 110.48713 * 335.77898 * 24 14 13 42 42 H 1.08996 * 110.48572 * 98.43000 * 24 14 13 43 43 H 1.09001 * 110.75945 * 279.62973 * 25 24 14 44 44 H 1.09002 * 110.75479 * 156.26136 * 25 24 14 45 45 H 1.08996 * 110.49126 * 203.37928 * 26 25 24 46 46 H 1.09003 * 110.48707 * 80.73268 * 26 25 24 47 47 H 1.09000 * 110.03433 * 238.56759 * 27 14 13 48 48 H 1.08994 * 110.03866 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3908 1.2078 0.0004 6 6 3.6141 -0.7155 0.0064 7 6 4.8349 -1.5990 0.0142 8 6 2.3271 -1.1331 0.0006 9 6 1.8598 -2.5658 0.0013 10 6 1.7048 -3.0443 -1.4193 11 8 1.9491 -2.2955 -2.3415 12 7 1.2935 -4.3041 -1.6650 13 6 1.1423 -4.7690 -3.0460 14 6 0.7854 -6.2569 -3.0470 15 7 1.7998 -7.0163 -2.3118 16 6 3.1094 -6.9731 -2.7097 17 1 3.3818 -6.4508 -3.6149 18 6 4.0867 -7.6005 -1.9496 19 7 3.7549 -8.2366 -0.8461 20 14 5.8731 -7.5421 -2.4927 21 1 6.3239 -6.1288 -2.5607 22 1 6.7120 -8.2821 -1.5159 23 1 6.0038 -8.1684 -3.8327 24 6 0.6835 -6.7748 -4.4966 25 6 -0.4908 -7.7840 -4.4575 26 6 -1.4920 -7.1063 -3.4893 27 6 -0.5977 -6.4675 -2.4066 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 5.1344 -1.8140 -1.0116 32 1 5.6485 -1.0902 0.5312 33 1 4.6048 -2.5321 0.5285 34 1 0.9008 -2.6350 0.5147 35 1 2.5930 -3.1869 0.5158 36 1 1.0978 -4.9028 -0.9274 37 1 0.3480 -4.2045 -3.5345 38 1 2.0782 -4.6195 -3.5843 39 1 1.5437 -7.5498 -1.5432 40 1 4.4378 -8.6754 -0.3151 41 1 0.4597 -5.9554 -5.1796 42 1 1.6067 -7.2750 -4.7887 43 1 -0.1615 -8.7449 -4.0622 44 1 -0.9311 -7.9028 -5.4475 45 1 -2.1562 -7.8483 -3.0464 46 1 -2.0670 -6.3404 -4.0097 47 1 -0.5145 -7.1355 -1.5493 48 1 -1.0146 -5.5100 -2.0946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:04 Heat of formation + Delta-G solvation = 26.282116 kcal Electronic energy + Delta-G solvation = -27973.522603 eV Core-core repulsion = 24257.297923 eV Total energy + Delta-G solvation = -3716.224680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29351 -39.22136 -37.98885 -33.98482 -33.36610 -33.24414 -32.79121 -30.65441 -29.27290 -28.25475 -27.87665 -27.38310 -25.95725 -24.18601 -23.09524 -20.67491 -20.12465 -19.79779 -19.11542 -18.47233 -17.23532 -16.97815 -16.59553 -15.67242 -15.10920 -14.97585 -14.72899 -14.57174 -14.05631 -13.81290 -13.40980 -13.32221 -13.25855 -13.17716 -12.91639 -12.72623 -12.53902 -12.33581 -12.22445 -12.05667 -11.80673 -11.45331 -11.36508 -11.08416 -10.77440 -10.71975 -10.63508 -10.53427 -10.41455 -10.23048 -10.13060 -9.86174 -9.64213 -9.33954 -9.12361 -8.90969 -8.29883 -8.22236 -7.00918 -5.81253 -3.09713 1.96164 2.77217 2.93081 3.26319 3.40564 3.45493 3.47193 3.98660 4.55945 4.71653 4.74073 5.07769 5.11893 5.13263 5.24337 5.24711 5.35311 5.48362 5.51907 5.55868 5.60881 5.65963 5.70823 5.80045 5.81456 5.89491 5.95454 5.96670 5.99846 6.06792 6.10098 6.20330 6.28426 6.30076 6.32408 6.46712 6.58296 6.64642 6.77232 6.78533 6.84747 7.03363 7.20389 7.37271 7.70041 7.79064 8.21969 8.37593 8.89277 9.49343 10.03751 10.39335 11.40756 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004418 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.972278 B = 6336.846860 C = 8270.387276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.093 3.907 3 N -0.303 5.303 4 N -0.479 5.479 5 H 0.435 0.565 6 C 0.104 3.896 7 C -0.096 4.096 8 C -0.210 4.210 9 C -0.063 4.063 10 C 0.510 3.490 11 O -0.550 6.550 12 N -0.703 5.703 13 C 0.122 3.878 14 C 0.189 3.811 15 N -0.710 5.710 16 C -0.230 4.230 17 H 0.068 0.932 18 C -0.008 4.008 19 N -0.932 5.932 20 Si 0.899 3.101 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 9.836 2.803 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.127 5.127 4 N -0.187 5.187 5 H 0.278 0.722 6 C -0.025 4.025 7 C -0.155 4.155 8 C -0.222 4.222 9 C -0.104 4.104 10 C 0.295 3.705 11 O -0.428 6.428 12 N -0.353 5.353 13 C -0.004 4.004 14 C 0.097 3.903 15 N -0.352 5.352 16 C -0.361 4.361 17 H 0.086 0.914 18 C -0.204 4.204 19 N -0.580 5.580 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.163 4.163 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.235 0.765 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.615 11.645 2.087 13.554 hybrid contribution 1.533 -1.064 0.239 1.882 sum -5.082 10.581 2.326 11.966 Atomic orbital electron populations 1.20165 0.87012 1.03425 1.02558 1.22102 0.96733 0.90195 0.98340 1.77192 0.86492 1.22333 1.26678 1.46014 1.07158 1.04752 1.60811 0.72168 1.20825 0.96977 0.84801 0.99861 1.20513 0.92598 0.98375 1.04001 1.19043 0.91264 0.94824 1.17041 1.19911 1.03204 0.92268 0.95021 1.20523 0.76936 0.81897 0.91134 1.90648 1.50497 1.55331 1.46313 1.45738 1.67533 1.12574 1.09457 1.21807 1.00544 0.95567 0.82487 1.20460 0.88589 0.89376 0.91896 1.42531 1.03311 1.54680 1.34629 1.19033 0.83606 1.28156 1.05282 0.91423 1.24646 0.97526 1.01069 0.97146 1.69635 1.32493 1.39833 1.16080 0.86392 0.85613 0.77415 0.77527 1.21393 1.21812 1.21367 1.22827 0.98990 0.97945 0.97477 1.22384 0.95846 0.99193 0.98047 1.22303 0.97432 0.99103 0.97006 1.22422 0.95057 1.00349 0.98491 0.90611 0.91014 0.90482 0.89714 0.91299 0.89264 0.88721 0.88407 0.76470 0.93440 0.91781 0.78136 0.93582 0.92983 0.90374 0.91432 0.92796 0.92399 0.92322 0.91321 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.12 36.00 0.36 -0.46 16 2 C 0.09 1.37 7.22 -82.41 -0.59 0.78 16 3 N -0.30 -4.65 12.70 33.67 0.43 -4.22 16 4 N -0.48 -6.33 7.36 33.48 0.25 -6.08 16 5 H 0.43 4.23 8.96 -182.61 -1.64 2.59 16 6 C 0.10 1.45 7.21 -82.26 -0.59 0.85 16 7 C -0.10 -1.13 10.22 36.01 0.37 -0.77 16 8 C -0.21 -3.13 4.59 -105.05 -0.48 -3.62 16 9 C -0.06 -0.87 5.64 -29.03 -0.16 -1.04 16 10 C 0.51 8.86 7.82 -10.98 -0.09 8.78 16 11 O -0.55 -11.62 16.03 5.56 0.09 -11.53 16 12 N -0.70 -11.94 5.10 -60.30 -0.31 -12.25 16 13 C 0.12 2.22 3.99 -4.04 -0.02 2.20 16 14 C 0.19 3.33 0.68 -130.70 -0.09 3.24 16 15 N -0.71 -15.46 4.76 -46.20 -0.22 -15.68 16 16 C -0.23 -5.78 8.39 -15.06 -0.13 -5.91 16 17 H 0.07 1.74 7.23 -52.49 -0.38 1.36 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 20 Si 0.90 21.62 29.55 -169.99 -5.02 16.59 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.13 -2.25 5.94 -25.07 -0.15 -2.40 16 25 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 26 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 27 C -0.13 -1.84 5.80 -25.62 -0.15 -1.99 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.04 7.14 -51.93 -0.37 0.67 16 34 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 35 H 0.10 1.28 7.14 -51.93 -0.37 0.91 16 36 H 0.40 6.44 7.99 -40.82 -0.33 6.11 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.36 7.49 -51.93 -0.39 0.97 16 39 H 0.38 8.97 7.28 -40.82 -0.30 8.67 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 42 H 0.08 1.53 7.12 -51.93 -0.37 1.16 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 48 H 0.06 0.83 7.54 -51.93 -0.39 0.44 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -32.03 387.35 -9.47 -41.49 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -9.09 Total: 15.42 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.15 Total: -4.30 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.87 Total: -63.51 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.03 -9.47 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.776 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds