Wall clock time and date at job start Tue Mar 31 2020 13:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39679 * 127.31613 * 2 1 4 4 N 1.30861 * 107.86181 * 179.97438 * 3 2 1 5 5 N 1.28444 * 110.92539 * 0.02562 * 4 3 2 6 6 C 1.46502 * 125.18912 * 179.97438 * 5 4 3 7 7 C 1.36604 * 109.62296 * 0.02562 * 5 4 3 8 8 C 1.47157 * 126.88671 * 180.02562 * 7 5 4 9 9 O 1.21631 * 120.00025 * 263.78017 * 8 7 5 10 10 N 1.34778 * 119.99957 * 83.77767 * 8 7 5 11 11 C 1.46928 * 120.63041 * 5.43291 * 10 8 7 12 12 C 1.53622 * 108.54204 * 126.36706 * 11 10 8 13 13 C 1.53040 * 109.24254 * 54.85542 * 12 11 10 14 14 C 1.53045 * 109.54037 * 298.51064 * 13 12 11 15 15 H 1.08996 * 109.49733 * 301.41555 * 14 13 12 16 16 C 1.52993 * 109.49699 * 181.31568 * 14 13 12 17 17 C 1.46930 * 120.62934 * 185.71016 * 10 8 7 18 18 H 1.09005 * 109.58341 * 113.65842 * 17 10 8 19 19 C 1.53001 * 109.58792 * 353.37692 * 17 10 8 20 20 N 1.46500 * 109.46992 * 67.34262 * 19 17 10 21 21 C 1.36938 * 119.99773 * 173.70885 * 20 19 17 22 22 H 1.08000 * 120.00032 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99912 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00357 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99952 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47187 * 90.00269 * 25 23 21 27 27 H 1.48504 * 109.47122 * 210.00184 * 25 23 21 28 28 H 1.48492 * 109.47126 * 330.00002 * 25 23 21 29 29 H 1.09002 * 109.46660 * 90.03035 * 1 2 3 30 30 H 1.09003 * 109.46726 * 210.02235 * 1 2 3 31 31 H 1.08990 * 109.47537 * 330.02607 * 1 2 3 32 32 H 1.07997 * 126.07009 * 0.23601 * 3 2 1 33 33 H 1.09006 * 109.46642 * 87.44825 * 6 5 4 34 34 H 1.09004 * 109.47494 * 207.44074 * 6 5 4 35 35 H 1.08997 * 109.47336 * 327.44653 * 6 5 4 36 36 H 1.08994 * 109.58525 * 246.19934 * 11 10 8 37 37 H 1.08997 * 109.58734 * 6.62839 * 11 10 8 38 38 H 1.09002 * 109.63476 * 294.86486 * 12 11 10 39 39 H 1.09004 * 109.46013 * 174.74168 * 12 11 10 40 40 H 1.09002 * 109.46346 * 178.49081 * 13 12 11 41 41 H 1.09004 * 109.46050 * 58.53460 * 13 12 11 42 42 H 1.09004 * 109.47211 * 300.15758 * 16 14 13 43 43 H 1.08995 * 109.47477 * 60.16417 * 16 14 13 44 44 H 1.09005 * 109.47209 * 180.16547 * 16 14 13 45 45 H 1.08996 * 109.46835 * 187.34523 * 19 17 10 46 46 H 1.08992 * 109.46762 * 307.34313 * 19 17 10 47 47 H 0.97006 * 120.00248 * 353.71408 * 20 19 17 48 48 H 0.96998 * 120.00454 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1109 0.0000 4 7 3.5877 0.6750 0.0006 5 7 3.6207 -0.6090 0.0004 6 6 4.8392 -1.4222 0.0003 7 6 2.3461 -1.1006 -0.0009 8 6 1.9456 -2.5166 -0.0010 9 8 1.6715 -3.0710 -1.0483 10 7 1.8827 -3.1992 1.1594 11 6 2.0948 -2.5155 2.4425 12 6 0.8957 -2.8094 3.3568 13 6 0.7110 -4.3241 3.4750 14 6 0.4185 -4.9135 2.0933 15 1 -0.4778 -4.4493 1.6820 16 6 0.2016 -6.4229 2.2175 17 6 1.6066 -4.6423 1.1650 18 1 2.4839 -5.1807 1.5240 19 6 1.2657 -5.1049 -0.2530 20 7 2.4539 -4.9917 -1.1024 21 6 2.4266 -5.4705 -2.3851 22 1 1.5291 -5.9310 -2.7706 23 6 3.5523 -5.3628 -3.1901 24 7 4.6460 -4.8011 -2.7205 25 14 3.5148 -6.0152 -4.9401 26 1 3.0600 -4.9410 -5.8593 27 1 4.8768 -6.4585 -5.3324 28 1 2.5780 -7.1645 -5.0200 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 2.0450 2.1458 0.0036 33 1 5.1667 -1.5860 1.0271 34 1 4.6352 -2.3825 -0.4734 35 1 5.6223 -0.9034 -0.5525 36 1 3.0100 -2.8838 2.9059 37 1 2.1740 -1.4413 2.2755 38 1 -0.0051 -2.3650 2.9336 39 1 1.0801 -2.3872 4.3446 40 1 -0.1225 -4.5371 4.1445 41 1 1.6212 -4.7708 3.8752 42 1 1.0979 -6.8860 2.6301 43 1 -0.6438 -6.6153 2.8780 44 1 -0.0037 -6.8427 1.2327 45 1 0.9352 -6.1432 -0.2268 46 1 0.4693 -4.4802 -0.6572 47 1 3.2601 -4.5778 -0.7562 48 1 5.4325 -4.7255 -3.2832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753808564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:33 Heat of formation + Delta-G solvation = 92.051147 kcal Electronic energy + Delta-G solvation = -29661.667179 eV Core-core repulsion = 25948.294457 eV Total energy + Delta-G solvation = -3713.372721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19541 -40.04208 -37.17262 -34.69055 -33.65078 -33.43965 -32.14636 -31.44720 -30.24597 -28.23588 -26.93791 -25.96610 -25.79127 -24.15695 -22.62004 -21.95900 -20.92771 -20.58232 -19.98066 -18.58829 -17.41792 -16.61165 -16.08202 -15.56696 -15.20302 -14.94381 -14.75843 -14.38295 -14.19469 -13.85086 -13.55529 -13.26543 -13.13441 -13.03166 -12.96677 -12.73373 -12.44474 -12.43393 -12.22716 -12.17521 -12.07048 -11.91144 -11.59436 -11.47632 -10.98986 -10.92566 -10.74142 -10.63493 -10.60198 -10.31120 -10.19028 -9.85821 -9.57394 -8.92236 -8.76688 -8.54824 -8.25115 -8.12934 -6.56662 -5.64453 -2.82410 2.07391 2.62333 2.94010 3.28530 3.47491 3.53915 3.56821 3.57145 4.66143 4.69443 4.78883 4.84421 4.87856 4.97889 5.04584 5.31013 5.34319 5.38859 5.43675 5.47271 5.56408 5.61332 5.67272 5.72540 5.75595 5.80281 5.83313 5.85270 5.87895 5.90668 5.97011 5.97994 6.10616 6.13592 6.15363 6.28234 6.33239 6.41159 6.53990 6.61638 6.85882 6.88903 7.08573 7.22994 7.81823 7.84765 8.40582 8.54846 8.80163 9.66435 10.23892 10.58179 11.60064 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.009821 B = 0.006465 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.307708 B = 4330.088502 C = 6212.434498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.182 4.182 3 C -0.002 4.002 4 N -0.297 5.297 5 N -0.269 5.269 6 C 0.087 3.913 7 C 0.003 3.997 8 C 0.537 3.463 9 O -0.418 6.418 10 N -0.608 5.608 11 C 0.114 3.886 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.099 4.099 15 H 0.074 0.926 16 C -0.146 4.146 17 C 0.149 3.851 18 H 0.070 0.930 19 C 0.157 3.843 20 N -0.692 5.692 21 C -0.209 4.209 22 H 0.066 0.934 23 C -0.020 4.020 24 N -0.940 5.940 25 Si 0.903 3.097 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.284 1.284 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.178 0.822 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.039 0.961 47 H 0.377 0.623 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 6.608 15.739 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.193 4.193 3 C -0.179 4.179 4 N -0.128 5.128 5 N -0.056 5.056 6 C -0.054 4.054 7 C -0.127 4.127 8 C 0.319 3.681 9 O -0.282 6.282 10 N -0.346 5.346 11 C -0.010 4.010 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.119 4.119 15 H 0.092 0.908 16 C -0.204 4.204 17 C 0.046 3.954 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.335 5.335 21 C -0.341 4.341 22 H 0.084 0.916 23 C -0.214 4.214 24 N -0.591 5.591 25 Si 0.735 3.265 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.210 1.210 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.195 0.805 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.056 0.944 47 H 0.211 0.789 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.867 6.447 14.919 17.279 hybrid contribution -0.256 -0.223 -0.879 0.943 sum -6.124 6.224 14.040 16.534 Atomic orbital electron populations 1.20005 0.88955 1.01752 1.02006 1.20553 0.96550 0.90939 1.11246 1.23282 0.88078 0.99482 1.07100 1.73066 1.24342 0.93898 1.21486 1.45616 1.05977 1.03431 1.50625 1.22245 0.83599 0.95913 1.03603 1.21723 0.85456 0.95465 1.10019 1.17105 0.83202 0.83443 0.84378 1.91299 1.42157 1.63789 1.30962 1.47745 1.73287 1.08481 1.05078 1.21638 0.97489 0.97578 0.84284 1.21965 0.98867 0.96808 0.99336 1.21576 1.01661 0.95003 0.96752 1.21472 0.98728 0.96490 0.95169 0.90771 1.21840 1.01348 0.94776 1.02418 1.21555 0.96652 0.79340 0.97877 0.91215 1.20989 0.92707 0.96596 0.86716 1.42306 1.10151 1.69610 1.11435 1.19168 0.96950 1.28689 0.89268 0.91576 1.24580 0.96353 1.02443 0.98037 1.69606 1.02639 1.50837 1.35980 0.86226 0.76357 0.78283 0.85613 1.22118 1.22093 1.21005 0.91620 0.92236 0.91730 0.80490 0.90414 0.87115 0.88855 0.92137 0.90358 0.91473 0.91237 0.91915 0.91896 0.92608 0.92847 0.91600 0.95855 0.94365 0.78944 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.28 36.01 0.37 -0.53 16 2 C -0.18 -2.88 6.24 -104.02 -0.65 -3.53 16 3 C 0.00 -0.03 12.00 -17.43 -0.21 -0.24 16 4 N -0.30 -5.03 11.90 30.59 0.36 -4.66 16 5 N -0.27 -4.67 3.75 -63.88 -0.24 -4.91 16 6 C 0.09 1.36 11.19 59.85 0.67 2.03 16 7 C 0.00 0.05 4.69 -82.06 -0.39 -0.33 16 8 C 0.54 10.36 5.97 -12.64 -0.08 10.28 16 9 O -0.42 -10.12 10.78 5.25 0.06 -10.06 16 10 N -0.61 -9.62 2.97 -166.31 -0.49 -10.11 16 11 C 0.11 1.40 6.34 -3.49 -0.02 1.38 16 12 C -0.13 -1.31 6.10 -26.39 -0.16 -1.47 16 13 C -0.11 -1.13 5.16 -26.69 -0.14 -1.27 16 14 C -0.10 -1.23 2.34 -90.50 -0.21 -1.44 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.15 -1.66 8.97 37.15 0.33 -1.33 16 17 C 0.15 2.40 2.41 -67.60 -0.16 2.23 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.26 4.77 -4.04 -0.02 3.24 16 20 N -0.69 -17.74 3.16 -59.91 -0.19 -17.93 16 21 C -0.21 -6.02 9.71 -15.06 -0.15 -6.17 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.94 -28.46 13.06 55.49 0.72 -27.74 16 25 Si 0.90 23.43 29.55 -169.99 -5.02 18.40 16 26 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 2.11 7.72 -51.93 -0.40 1.71 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.01 6.34 -51.93 -0.33 0.68 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 45 H 0.02 0.48 6.32 -51.93 -0.33 0.15 16 46 H 0.04 0.87 6.48 -51.93 -0.34 0.54 16 47 H 0.38 10.13 6.82 -40.82 -0.28 9.85 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -33.85 376.42 -7.92 -41.78 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.89 Total: 7.39 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.90 Total: 2.18 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.17 Total: -65.36 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.85 -7.92 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753808564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.827 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds