Wall clock time and date at job start Tue Mar 31 2020 13:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39679 * 127.31613 * 2 1 4 4 N 1.30861 * 107.86181 * 179.97438 * 3 2 1 5 5 N 1.28444 * 110.92539 * 0.02562 * 4 3 2 6 6 C 1.46502 * 125.18912 * 179.97438 * 5 4 3 7 7 C 1.36604 * 109.62296 * 0.02562 * 5 4 3 8 8 C 1.47157 * 126.88671 * 180.02562 * 7 5 4 9 9 O 1.21631 * 120.00025 * 263.78017 * 8 7 5 10 10 N 1.34778 * 119.99957 * 83.77767 * 8 7 5 11 11 C 1.46928 * 120.63041 * 5.43291 * 10 8 7 12 12 C 1.53622 * 108.54204 * 126.36706 * 11 10 8 13 13 C 1.53040 * 109.24254 * 54.85542 * 12 11 10 14 14 C 1.53045 * 109.54037 * 298.51064 * 13 12 11 15 15 H 1.08996 * 109.49733 * 301.41555 * 14 13 12 16 16 C 1.52993 * 109.49699 * 181.31568 * 14 13 12 17 17 C 1.46930 * 120.62934 * 185.71016 * 10 8 7 18 18 H 1.09005 * 109.58341 * 113.65842 * 17 10 8 19 19 C 1.53001 * 109.58792 * 353.37692 * 17 10 8 20 20 N 1.46500 * 109.46992 * 67.34262 * 19 17 10 21 21 C 1.36938 * 119.99773 * 173.70885 * 20 19 17 22 22 H 1.08000 * 120.00032 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99912 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00357 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99952 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47187 * 90.00269 * 25 23 21 27 27 H 1.48504 * 109.47122 * 210.00184 * 25 23 21 28 28 H 1.48492 * 109.47126 * 330.00002 * 25 23 21 29 29 H 1.09002 * 109.46660 * 90.03035 * 1 2 3 30 30 H 1.09003 * 109.46726 * 210.02235 * 1 2 3 31 31 H 1.08990 * 109.47537 * 330.02607 * 1 2 3 32 32 H 1.07997 * 126.07009 * 0.23601 * 3 2 1 33 33 H 1.09006 * 109.46642 * 87.44825 * 6 5 4 34 34 H 1.09004 * 109.47494 * 207.44074 * 6 5 4 35 35 H 1.08997 * 109.47336 * 327.44653 * 6 5 4 36 36 H 1.08994 * 109.58525 * 246.19934 * 11 10 8 37 37 H 1.08997 * 109.58734 * 6.62839 * 11 10 8 38 38 H 1.09002 * 109.63476 * 294.86486 * 12 11 10 39 39 H 1.09004 * 109.46013 * 174.74168 * 12 11 10 40 40 H 1.09002 * 109.46346 * 178.49081 * 13 12 11 41 41 H 1.09004 * 109.46050 * 58.53460 * 13 12 11 42 42 H 1.09004 * 109.47211 * 300.15758 * 16 14 13 43 43 H 1.08995 * 109.47477 * 60.16417 * 16 14 13 44 44 H 1.09005 * 109.47209 * 180.16547 * 16 14 13 45 45 H 1.08996 * 109.46835 * 187.34523 * 19 17 10 46 46 H 1.08992 * 109.46762 * 307.34313 * 19 17 10 47 47 H 0.97006 * 120.00248 * 353.71408 * 20 19 17 48 48 H 0.96998 * 120.00454 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1109 0.0000 4 7 3.5877 0.6750 0.0006 5 7 3.6207 -0.6090 0.0004 6 6 4.8392 -1.4222 0.0003 7 6 2.3461 -1.1006 -0.0009 8 6 1.9456 -2.5166 -0.0010 9 8 1.6715 -3.0710 -1.0483 10 7 1.8827 -3.1992 1.1594 11 6 2.0948 -2.5155 2.4425 12 6 0.8957 -2.8094 3.3568 13 6 0.7110 -4.3241 3.4750 14 6 0.4185 -4.9135 2.0933 15 1 -0.4778 -4.4493 1.6820 16 6 0.2016 -6.4229 2.2175 17 6 1.6066 -4.6423 1.1650 18 1 2.4839 -5.1807 1.5240 19 6 1.2657 -5.1049 -0.2530 20 7 2.4539 -4.9917 -1.1024 21 6 2.4266 -5.4705 -2.3851 22 1 1.5291 -5.9310 -2.7706 23 6 3.5523 -5.3628 -3.1901 24 7 4.6460 -4.8011 -2.7205 25 14 3.5148 -6.0152 -4.9401 26 1 3.0600 -4.9410 -5.8593 27 1 4.8768 -6.4585 -5.3324 28 1 2.5780 -7.1645 -5.0200 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 2.0450 2.1458 0.0036 33 1 5.1667 -1.5860 1.0271 34 1 4.6352 -2.3825 -0.4734 35 1 5.6223 -0.9034 -0.5525 36 1 3.0100 -2.8838 2.9059 37 1 2.1740 -1.4413 2.2755 38 1 -0.0051 -2.3650 2.9336 39 1 1.0801 -2.3872 4.3446 40 1 -0.1225 -4.5371 4.1445 41 1 1.6212 -4.7708 3.8752 42 1 1.0979 -6.8860 2.6301 43 1 -0.6438 -6.6153 2.8780 44 1 -0.0037 -6.8427 1.2327 45 1 0.9352 -6.1432 -0.2268 46 1 0.4693 -4.4802 -0.6572 47 1 3.2601 -4.5778 -0.7562 48 1 5.4325 -4.7255 -3.2832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753808564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:32 Heat of formation + Delta-G solvation = 70.345818 kcal Electronic energy + Delta-G solvation = -29662.608392 eV Core-core repulsion = 25948.294457 eV Total energy + Delta-G solvation = -3714.313935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.47597 -41.39825 -38.48647 -36.43635 -34.88146 -34.82337 -33.69215 -32.67043 -31.94575 -29.53664 -28.32136 -27.09800 -27.02409 -25.84105 -24.30204 -23.13788 -22.27194 -21.80222 -21.06929 -19.93405 -19.23435 -18.17530 -17.41908 -16.86610 -16.73298 -16.49006 -16.10496 -15.56309 -15.48769 -15.42644 -15.08236 -14.72822 -14.30937 -14.26822 -14.17546 -14.08426 -13.80154 -13.75568 -13.47243 -13.37288 -13.34789 -13.02104 -12.97153 -12.85520 -12.74343 -12.52657 -12.13087 -11.95786 -11.87915 -11.62391 -11.58258 -11.54096 -11.12543 -10.90073 -10.30287 -9.98177 -9.57128 -9.53987 -8.62063 -7.87477 -5.04284 0.74905 1.26647 1.41248 1.44656 1.50993 1.74205 1.92905 2.16062 2.58802 3.45395 3.48979 3.60699 3.74440 3.81736 3.92890 4.08090 4.18184 4.19837 4.23941 4.27906 4.32453 4.39102 4.49154 4.51313 4.58141 4.62040 4.73087 4.80468 4.82897 4.83565 4.86251 4.96974 5.02393 5.08168 5.12897 5.19020 5.25327 5.28448 5.30619 5.42613 5.50930 5.54899 5.66149 5.77419 5.84359 6.34495 6.48006 7.13819 7.34164 7.41951 8.18944 8.42350 9.36835 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.009821 B = 0.006465 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.307708 B = 4330.088502 C = 6212.434498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.311 5.311 5 N -0.278 5.278 6 C 0.092 3.908 7 C -0.027 4.027 8 C 0.548 3.452 9 O -0.485 6.485 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.091 4.091 15 H 0.066 0.934 16 C -0.143 4.143 17 C 0.154 3.846 18 H 0.066 0.934 19 C 0.161 3.839 20 N -0.700 5.700 21 C -0.212 4.212 22 H 0.061 0.939 23 C -0.080 4.080 24 N -0.967 5.967 25 Si 0.961 3.039 26 H -0.300 1.300 27 H -0.293 1.293 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.217 0.783 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.026 0.974 46 H 0.016 0.984 47 H 0.367 0.633 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 7.689 18.433 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.192 4.192 3 C -0.172 4.172 4 N -0.142 5.142 5 N -0.066 5.066 6 C -0.048 4.048 7 C -0.156 4.156 8 C 0.331 3.669 9 O -0.354 6.354 10 N -0.336 5.336 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.144 4.144 14 C -0.111 4.111 15 H 0.085 0.915 16 C -0.201 4.201 17 C 0.051 3.949 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.341 5.341 21 C -0.345 4.345 22 H 0.079 0.921 23 C -0.271 4.271 24 N -0.619 5.619 25 Si 0.793 3.207 26 H -0.229 1.229 27 H -0.220 1.220 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.199 0.801 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.118 7.514 17.689 20.495 hybrid contribution 0.041 -0.449 -1.630 1.692 sum -7.077 7.065 16.059 18.918 Atomic orbital electron populations 1.20077 0.87067 1.03294 1.01968 1.21008 0.97883 0.90478 1.09794 1.23936 0.87065 1.00944 1.05285 1.73061 1.25539 0.93515 1.22066 1.45678 1.05914 1.03724 1.51296 1.22173 0.83516 0.94001 1.05156 1.21742 0.86468 0.95249 1.12187 1.17421 0.81202 0.83923 0.84352 1.91271 1.45512 1.65558 1.33054 1.47866 1.71548 1.08400 1.05751 1.21919 0.99516 0.97063 0.82816 1.21948 0.97249 0.96981 1.00006 1.21568 1.03086 0.94692 0.95035 1.21429 0.96257 0.97536 0.95836 0.91508 1.21821 1.02644 0.93707 1.01929 1.21492 0.98279 0.79398 0.95744 0.91619 1.20985 0.90545 0.96221 0.88729 1.42348 1.11158 1.69533 1.11023 1.19454 0.96525 1.27705 0.90804 0.92095 1.25281 0.96424 1.03866 1.01529 1.69755 1.02897 1.52489 1.36800 0.85288 0.76391 0.77745 0.81326 1.22877 1.21970 1.19628 0.92365 0.92797 0.88053 0.76646 0.87437 0.91178 0.88016 0.90936 0.90706 0.91751 0.88176 0.89312 0.91153 0.92173 0.90217 0.93619 0.95658 0.96603 0.80103 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.28 71.24 0.73 -0.87 16 2 C -0.18 -5.51 6.24 -19.48 -0.12 -5.63 16 3 C 0.00 0.14 12.00 85.19 1.02 1.16 16 4 N -0.31 -10.17 11.90 -57.14 -0.68 -10.85 16 5 N -0.28 -9.69 3.75 -356.01 -1.33 -11.03 16 6 C 0.09 2.97 11.19 127.77 1.43 4.40 16 7 C -0.03 -0.99 4.69 40.78 0.19 -0.80 16 8 C 0.55 21.88 5.97 86.59 0.52 22.39 16 9 O -0.48 -24.85 10.78 -4.13 -0.04 -24.90 16 10 N -0.60 -19.03 2.97 -798.34 -2.37 -21.40 16 11 C 0.11 2.48 6.34 86.51 0.55 3.03 16 12 C -0.12 -2.03 6.10 30.82 0.19 -1.85 16 13 C -0.11 -1.74 5.16 30.62 0.16 -1.59 16 14 C -0.09 -2.11 2.34 -10.72 -0.03 -2.13 16 15 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 16 C -0.14 -3.02 8.97 71.98 0.65 -2.37 16 17 C 0.15 4.99 2.41 44.97 0.11 5.10 16 18 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 19 C 0.16 7.00 4.77 86.38 0.41 7.41 16 20 N -0.70 -37.73 3.16 -343.47 -1.08 -38.82 16 21 C -0.21 -12.75 9.71 84.03 0.82 -11.94 16 22 H 0.06 3.63 7.83 -2.91 -0.02 3.60 16 23 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 24 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 25 Si 0.96 49.72 29.55 68.60 2.03 51.75 16 26 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 27 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.22 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.07 2.87 7.72 -2.38 -0.02 2.85 16 35 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.80 6.34 -2.39 -0.02 1.79 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.14 6.47 -2.38 -0.02 1.12 16 45 H 0.03 1.09 6.32 -2.39 -0.02 1.07 16 46 H 0.02 0.78 6.48 -2.39 -0.02 0.76 16 47 H 0.37 20.89 6.82 -92.70 -0.63 20.25 16 48 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.98 376.42 4.21 -73.77 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.32 Total: 30.30 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.09 Total: 11.93 kcal Atomic # 7 Polarization: -137.67 SS G_CDS: -5.18 Total: -142.85 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.03 Total: 51.75 kcal Total: -77.98 4.21 -73.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753808564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.118 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds