Wall clock time and date at job start Tue Mar 31 2020 12:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35040 * 126.38314 * 2 1 4 4 H 0.96998 * 124.88396 * 0.02806 * 3 2 1 5 5 N 1.28467 * 110.22855 * 180.02562 * 3 2 1 6 6 C 1.31811 * 110.07278 * 0.02562 * 5 3 2 7 7 C 1.47716 * 126.51551 * 179.97438 * 6 5 3 8 8 O 1.21574 * 119.99717 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99995 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47020 * 34.99451 * 10 9 7 12 12 C 1.53005 * 109.46632 * 274.99522 * 10 9 7 13 13 C 1.52997 * 109.47452 * 299.99871 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 17 17 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 18 18 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 19 19 N 1.46502 * 109.47005 * 64.99872 * 18 16 15 20 20 C 1.36940 * 120.00284 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99632 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00388 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00211 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99946 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47410 * 89.99839 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00251 * 24 22 20 27 27 H 1.48503 * 109.46767 * 330.00110 * 24 22 20 28 28 C 1.35363 * 126.38906 * 180.31270 * 2 1 3 29 29 C 1.50707 * 127.24451 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47060 * 89.97541 * 1 2 3 31 31 H 1.08990 * 109.47491 * 209.97832 * 1 2 3 32 32 H 1.09002 * 109.47838 * 329.98345 * 1 2 3 33 33 H 0.97008 * 120.00272 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46935 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.46812 * 60.00088 * 12 10 9 36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 38 38 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 39 39 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 41 41 H 1.09001 * 109.47194 * 180.02562 * 15 14 13 42 42 H 1.08996 * 109.47729 * 184.99759 * 18 16 15 43 43 H 1.09001 * 109.47563 * 305.00337 * 18 16 15 44 44 H 0.96995 * 120.00463 * 0.02562 * 19 18 16 45 45 H 0.96996 * 119.99708 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.46658 * 270.16014 * 29 28 2 47 47 H 1.08997 * 109.46712 * 30.15839 * 29 28 2 48 48 H 1.08993 * 109.46901 * 150.16402 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0058 0.0004 5 7 3.5420 0.7297 -0.0005 6 6 3.6320 -0.5853 -0.0015 7 6 4.8765 -1.3811 -0.0029 8 8 4.8213 -2.5956 -0.0041 9 7 6.0730 -0.7608 -0.0027 10 6 7.3073 -1.5501 -0.0047 11 1 7.1594 -2.4542 -0.5952 12 6 7.6701 -1.9327 1.4317 13 6 7.8776 -0.6636 2.2606 14 6 9.0112 0.1638 1.6513 15 6 8.6483 0.5465 0.2151 16 6 8.4408 -0.7226 -0.6139 17 1 9.3591 -1.3098 -0.6153 18 6 8.0786 -0.3400 -2.0502 19 7 9.2119 0.3486 -2.6728 20 6 9.1193 0.7884 -3.9663 21 1 8.2108 0.6272 -4.5277 22 6 10.1933 1.4404 -4.5564 23 7 10.1044 1.8626 -5.7999 24 14 11.7654 1.7173 -3.5862 25 1 12.6783 0.5626 -3.7826 26 1 12.4279 2.9586 -4.0610 27 1 11.4395 1.8508 -2.1435 28 6 2.3100 -1.0897 -0.0059 29 6 1.8854 -2.5357 -0.0133 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3635 0.8898 0.5141 33 1 6.1170 0.2083 -0.0021 34 1 8.5882 -2.5203 1.4302 35 1 6.8625 -2.5222 1.8656 36 1 8.1356 -0.9362 3.2839 37 1 6.9593 -0.0764 2.2619 38 1 9.9294 -0.4234 1.6500 39 1 9.1587 1.0682 2.2417 40 1 7.7300 1.1338 0.2165 41 1 9.4561 1.1356 -0.2191 42 1 7.8442 -1.2404 -2.6180 43 1 7.2117 0.3207 -2.0427 44 1 10.0280 0.4931 -2.1688 45 1 10.8548 2.3185 -6.2120 46 1 1.7806 -2.8887 1.0127 47 1 0.9303 -2.6311 -0.5297 48 1 2.6381 -3.1327 -0.5279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:09 Heat of formation + Delta-G solvation = 25.345499 kcal Electronic energy + Delta-G solvation = -27787.381109 eV Core-core repulsion = 24071.115814 eV Total energy + Delta-G solvation = -3716.265295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.86750 -40.11327 -38.01716 -34.79651 -33.94973 -33.37940 -32.59078 -31.91390 -30.06493 -29.81575 -28.43551 -26.28441 -25.52073 -24.23787 -22.70303 -22.04342 -20.76821 -20.28908 -20.16799 -18.88238 -17.76440 -17.66258 -16.96535 -16.15770 -15.60956 -15.20651 -14.86428 -14.42689 -14.23267 -14.04907 -13.92974 -13.73574 -13.42360 -13.27566 -13.20916 -12.95627 -12.80994 -12.74334 -12.55304 -12.23475 -12.12634 -12.04713 -11.72219 -11.53271 -11.05159 -10.94381 -10.90065 -10.75479 -10.40903 -10.21760 -9.97904 -9.89752 -9.87931 -9.53625 -9.46800 -8.89925 -8.84817 -8.76922 -7.18274 -5.73270 -3.08184 1.50820 1.90422 2.65561 3.29133 3.38668 3.41525 3.46768 3.47224 4.34600 4.42449 4.61809 4.67998 4.75735 4.86324 4.89706 5.07625 5.11622 5.16150 5.21260 5.30120 5.44783 5.54713 5.55681 5.57801 5.59967 5.64022 5.69842 5.72229 5.79009 5.84018 5.85946 6.03413 6.05081 6.13743 6.17610 6.23590 6.31701 6.40308 6.45555 6.55073 6.62454 6.76649 6.79640 6.85418 7.53911 7.81499 8.04057 8.33151 8.45906 9.25464 9.97648 10.17990 11.45452 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003513 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.654427 B = 7968.185210 C = 9106.632587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.004 3.996 3 N -0.380 5.380 4 H 0.444 0.556 5 N -0.254 5.254 6 C -0.009 4.009 7 C 0.604 3.396 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.155 3.845 11 H 0.092 0.908 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.106 4.106 17 H 0.086 0.914 18 C 0.163 3.837 19 N -0.754 5.754 20 C -0.241 4.241 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.145 4.145 29 C -0.078 4.078 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.408 -4.226 18.864 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 N -0.094 5.094 4 H 0.289 0.711 5 N -0.090 5.090 6 C -0.170 4.170 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.354 5.354 10 C 0.051 3.949 11 H 0.110 0.890 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.151 4.151 16 C -0.125 4.125 17 H 0.104 0.896 18 C 0.036 3.964 19 N -0.400 5.400 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.155 4.155 29 C -0.135 4.135 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.840 -4.136 18.625 25.448 hybrid contribution 0.596 0.809 0.475 1.112 sum -16.243 -3.327 19.100 25.293 Atomic orbital electron populations 1.20325 0.86639 1.03783 1.03347 1.21203 0.95201 0.86961 1.08753 1.43184 1.02965 1.09454 1.53819 0.71125 1.73570 1.01591 1.14971 1.18851 1.21893 0.95007 0.89644 1.10437 1.16845 0.81664 0.86406 0.76251 1.90749 1.86730 1.12770 1.50727 1.45972 1.04838 1.11014 1.73603 1.20971 0.82855 0.94864 0.96240 0.89038 1.21908 1.01821 0.97666 0.95255 1.21491 0.98883 0.96619 0.98400 1.21581 0.98342 0.99541 0.96323 1.21569 1.02152 0.97224 0.94202 1.21677 0.97921 0.96737 0.96150 0.89616 1.20631 0.90990 0.95393 0.89363 1.42713 1.13716 1.70351 1.13236 1.19068 1.00927 1.29728 0.87326 0.89347 1.24666 0.97858 1.00725 0.96026 1.69705 1.31659 1.44757 1.12297 0.86546 0.84793 0.77566 0.79601 1.21107 1.21818 1.20318 1.20107 0.90661 0.96640 1.08109 1.20177 1.01402 0.89790 1.02170 0.90302 0.89601 0.91176 0.75636 0.90977 0.91517 0.92440 0.92138 0.91977 0.92266 0.92165 0.90929 0.95496 0.95495 0.80659 0.93131 0.91627 0.92113 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.14 36.00 0.37 -0.05 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.38 -3.54 6.83 33.50 0.23 -3.31 16 4 H 0.44 2.49 8.96 -190.44 -1.71 0.78 16 5 N -0.25 -3.24 11.92 33.42 0.40 -2.84 16 6 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 7 C 0.60 9.21 7.79 -12.39 -0.10 9.12 16 8 O -0.53 -9.11 14.78 5.30 0.08 -9.04 16 9 N -0.70 -9.89 3.62 -54.79 -0.20 -10.09 16 10 C 0.16 2.16 2.23 -67.93 -0.15 2.01 16 11 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.13 -1.53 5.60 -26.73 -0.15 -1.68 16 13 C -0.12 -1.29 5.77 -26.73 -0.15 -1.44 16 14 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.11 -1.62 4.91 -26.73 -0.13 -1.75 16 16 C -0.11 -1.61 2.02 -90.63 -0.18 -1.79 16 17 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.16 3.24 5.42 -4.04 -0.02 3.21 16 19 N -0.75 -18.11 5.13 -59.91 -0.31 -18.42 16 20 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -29.90 13.97 55.49 0.78 -29.12 16 24 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 28 C -0.15 -1.73 6.25 -104.40 -0.65 -2.38 16 29 C -0.08 -0.81 9.61 36.01 0.35 -0.46 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.37 7.98 -51.93 -0.41 -0.04 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.41 5.64 6.39 -40.82 -0.26 5.38 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.85 6.51 -51.93 -0.34 0.51 16 41 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.03 0.55 7.61 -51.93 -0.40 0.16 16 44 H 0.36 8.36 4.71 -40.82 -0.19 8.17 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 48 H 0.08 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -35.02 377.74 -9.52 -44.54 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -9.05 Total: 10.15 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.43 Total: -5.19 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.90 Total: -63.78 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.02 -9.52 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.889 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds