Wall clock time and date at job start Tue Mar 31 2020 12:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35040 * 126.38314 * 2 1 4 4 H 0.96998 * 124.88396 * 0.02806 * 3 2 1 5 5 N 1.28467 * 110.22855 * 180.02562 * 3 2 1 6 6 C 1.31811 * 110.07278 * 0.02562 * 5 3 2 7 7 C 1.47716 * 126.51551 * 179.97438 * 6 5 3 8 8 O 1.21574 * 119.99717 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99995 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47020 * 34.99451 * 10 9 7 12 12 C 1.53005 * 109.46632 * 274.99522 * 10 9 7 13 13 C 1.52997 * 109.47452 * 299.99871 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 17 17 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 18 18 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 19 19 N 1.46502 * 109.47005 * 64.99872 * 18 16 15 20 20 C 1.36940 * 120.00284 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99632 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00388 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00211 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99946 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47410 * 89.99839 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00251 * 24 22 20 27 27 H 1.48503 * 109.46767 * 330.00110 * 24 22 20 28 28 C 1.35363 * 126.38906 * 180.31270 * 2 1 3 29 29 C 1.50707 * 127.24451 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47060 * 89.97541 * 1 2 3 31 31 H 1.08990 * 109.47491 * 209.97832 * 1 2 3 32 32 H 1.09002 * 109.47838 * 329.98345 * 1 2 3 33 33 H 0.97008 * 120.00272 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46935 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.46812 * 60.00088 * 12 10 9 36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 38 38 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 39 39 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 41 41 H 1.09001 * 109.47194 * 180.02562 * 15 14 13 42 42 H 1.08996 * 109.47729 * 184.99759 * 18 16 15 43 43 H 1.09001 * 109.47563 * 305.00337 * 18 16 15 44 44 H 0.96995 * 120.00463 * 0.02562 * 19 18 16 45 45 H 0.96996 * 119.99708 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.46658 * 270.16014 * 29 28 2 47 47 H 1.08997 * 109.46712 * 30.15839 * 29 28 2 48 48 H 1.08993 * 109.46901 * 150.16402 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0058 0.0004 5 7 3.5420 0.7297 -0.0005 6 6 3.6320 -0.5853 -0.0015 7 6 4.8765 -1.3811 -0.0029 8 8 4.8213 -2.5956 -0.0041 9 7 6.0730 -0.7608 -0.0027 10 6 7.3073 -1.5501 -0.0047 11 1 7.1594 -2.4542 -0.5952 12 6 7.6701 -1.9327 1.4317 13 6 7.8776 -0.6636 2.2606 14 6 9.0112 0.1638 1.6513 15 6 8.6483 0.5465 0.2151 16 6 8.4408 -0.7226 -0.6139 17 1 9.3591 -1.3098 -0.6153 18 6 8.0786 -0.3400 -2.0502 19 7 9.2119 0.3486 -2.6728 20 6 9.1193 0.7884 -3.9663 21 1 8.2108 0.6272 -4.5277 22 6 10.1933 1.4404 -4.5564 23 7 10.1044 1.8626 -5.7999 24 14 11.7654 1.7173 -3.5862 25 1 12.6783 0.5626 -3.7826 26 1 12.4279 2.9586 -4.0610 27 1 11.4395 1.8508 -2.1435 28 6 2.3100 -1.0897 -0.0059 29 6 1.8854 -2.5357 -0.0133 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3635 0.8898 0.5141 33 1 6.1170 0.2083 -0.0021 34 1 8.5882 -2.5203 1.4302 35 1 6.8625 -2.5222 1.8656 36 1 8.1356 -0.9362 3.2839 37 1 6.9593 -0.0764 2.2619 38 1 9.9294 -0.4234 1.6500 39 1 9.1587 1.0682 2.2417 40 1 7.7300 1.1338 0.2165 41 1 9.4561 1.1356 -0.2191 42 1 7.8442 -1.2404 -2.6180 43 1 7.2117 0.3207 -2.0427 44 1 10.0280 0.4931 -2.1688 45 1 10.8548 2.3185 -6.2120 46 1 1.7806 -2.8887 1.0127 47 1 0.9303 -2.6311 -0.5297 48 1 2.6381 -3.1327 -0.5279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:08 Heat of formation + Delta-G solvation = 1.154055 kcal Electronic energy + Delta-G solvation = -27788.430128 eV Core-core repulsion = 24071.115814 eV Total energy + Delta-G solvation = -3717.314315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71873 -41.27919 -39.22597 -36.63384 -34.90179 -34.30748 -33.88201 -33.41026 -31.64430 -30.92734 -29.19549 -27.17418 -27.00493 -25.29291 -24.41404 -23.22052 -22.14350 -21.46568 -21.00987 -20.00485 -19.70483 -18.52019 -18.08812 -17.07996 -16.79013 -16.57942 -16.39594 -15.82755 -15.61691 -15.30720 -15.04498 -14.78452 -14.66736 -14.61348 -14.18570 -13.97404 -13.85415 -13.81821 -13.61920 -13.16858 -13.06717 -13.02946 -12.96019 -12.90272 -12.73855 -12.57768 -12.16788 -11.92114 -11.86193 -11.80051 -11.43910 -11.23896 -11.09475 -11.02594 -10.90786 -10.39633 -9.96151 -9.63385 -9.31748 -8.04568 -5.38742 0.51541 1.08994 1.36378 1.41341 1.48511 1.89293 2.26784 2.36886 2.47320 3.26339 3.37780 3.45328 3.74632 3.77772 3.81394 3.92605 4.05653 4.20769 4.28291 4.30799 4.37059 4.43946 4.47943 4.55298 4.65641 4.71530 4.78277 4.88033 4.90323 4.93512 4.99607 5.03711 5.06628 5.11158 5.14596 5.21047 5.24385 5.27843 5.32098 5.41052 5.48306 5.56254 5.60086 5.72283 6.12514 6.19003 6.47035 6.87406 7.05770 7.18385 7.80269 8.02763 9.17332 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003513 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.654427 B = 7968.185210 C = 9106.632587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.024 3.976 3 N -0.366 5.366 4 H 0.460 0.540 5 N -0.275 5.275 6 C -0.040 4.040 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.698 5.698 10 C 0.158 3.842 11 H 0.074 0.926 12 C -0.120 4.120 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.092 4.092 17 H 0.095 0.905 18 C 0.164 3.836 19 N -0.752 5.752 20 C -0.238 4.238 21 H 0.048 0.952 22 C -0.064 4.064 23 N -0.985 5.985 24 Si 0.959 3.041 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.246 1.246 28 C -0.175 4.175 29 C -0.072 4.072 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.408 0.592 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.011 0.989 43 H 0.018 0.982 44 H 0.369 0.631 45 H 0.259 0.741 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 -3.734 21.804 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.083 5.083 4 H 0.308 0.692 5 N -0.112 5.112 6 C -0.200 4.200 7 C 0.384 3.616 8 O -0.439 6.439 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.111 4.111 17 H 0.113 0.887 18 C 0.038 3.962 19 N -0.398 5.398 20 C -0.369 4.369 21 H 0.066 0.934 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.170 1.170 28 C -0.185 4.185 29 C -0.130 4.130 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.245 0.755 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.203 0.797 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.141 -3.641 21.611 27.823 hybrid contribution 0.506 0.671 -0.531 0.994 sum -16.636 -2.970 21.079 27.017 Atomic orbital electron populations 1.20527 0.83228 1.05607 1.04624 1.21768 0.96924 0.85744 1.05775 1.43316 1.02164 1.10595 1.52217 0.69177 1.73486 1.03357 1.14519 1.19804 1.21866 0.95253 0.90318 1.12513 1.17134 0.82375 0.86326 0.75733 1.90719 1.87201 1.13839 1.52095 1.45960 1.04785 1.10980 1.73275 1.20925 0.82340 0.93810 0.97571 0.90806 1.21849 1.02205 0.98382 0.93437 1.21453 0.98453 0.95717 0.99172 1.21534 0.98790 1.00405 0.94261 1.21540 1.01494 0.96090 0.95814 1.21543 0.98687 0.97783 0.93096 0.88673 1.20703 0.89546 0.93928 0.92026 1.42628 1.15157 1.70336 1.11656 1.18999 0.99496 1.29363 0.89074 0.93430 1.25564 1.02002 1.00778 0.97198 1.69902 1.32999 1.46111 1.14561 0.85356 0.79352 0.77249 0.79519 1.20284 1.22111 1.17003 1.20444 0.90374 0.98085 1.09620 1.20128 1.01638 0.88728 1.02474 0.89109 0.88477 0.88701 0.75513 0.89435 0.92218 0.90398 0.92808 0.90948 0.90872 0.92393 0.92543 0.97142 0.96399 0.79718 0.93255 0.91070 0.89562 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.14 71.24 0.72 0.17 16 2 C 0.02 0.40 7.23 41.40 0.30 0.70 16 3 N -0.37 -6.33 6.83 -47.93 -0.33 -6.66 16 4 H 0.46 4.28 8.96 -220.00 -1.97 2.31 16 5 N -0.27 -6.99 11.92 -48.18 -0.57 -7.56 16 6 C -0.04 -1.14 7.13 42.46 0.30 -0.84 16 7 C 0.60 19.03 7.79 86.75 0.68 19.70 16 8 O -0.56 -20.09 14.78 -3.95 -0.06 -20.15 16 9 N -0.70 -20.16 3.62 -445.51 -1.61 -21.77 16 10 C 0.16 4.39 2.23 44.99 0.10 4.49 16 11 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 12 C -0.12 -2.69 5.60 30.60 0.17 -2.52 16 13 C -0.11 -2.16 5.77 30.59 0.18 -1.98 16 14 C -0.11 -2.29 5.92 30.60 0.18 -2.10 16 15 C -0.11 -3.00 4.91 30.59 0.15 -2.85 16 16 C -0.09 -2.74 2.02 -10.80 -0.02 -2.76 16 17 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 18 C 0.16 6.65 5.42 86.38 0.47 7.12 16 19 N -0.75 -36.19 5.13 -343.46 -1.76 -37.95 16 20 C -0.24 -14.18 10.47 84.03 0.88 -13.30 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.99 -64.66 13.97 21.65 0.30 -64.36 16 24 Si 0.96 45.84 27.74 68.60 1.90 47.74 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 28 C -0.18 -4.12 6.25 -19.72 -0.12 -4.24 16 29 C -0.07 -1.48 9.61 71.24 0.68 -0.80 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.51 7.98 -2.39 -0.02 0.49 16 32 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.41 11.54 6.39 -92.70 -0.59 10.94 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.57 6.51 -2.39 -0.02 1.56 16 41 H 0.06 1.72 7.18 -2.39 -0.02 1.70 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.02 0.76 7.61 -2.39 -0.02 0.75 16 44 H 0.37 16.52 4.71 -92.71 -0.44 16.08 16 45 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.09 1.25 8.00 -2.39 -0.02 1.23 16 48 H 0.06 1.47 6.72 -2.39 -0.02 1.46 16 Total: -1.00 -79.16 377.74 0.94 -78.22 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -2.07 Total: 35.10 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.13 Total: -2.61 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -3.97 Total: -138.30 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -79.16 0.94 -78.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.374 kcal (2) G-P(sol) polarization free energy of solvation -79.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds