Wall clock time and date at job start Tue Mar 31 2020 12:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35034 * 126.38121 * 2 1 4 4 H 0.97002 * 124.88378 * 0.04546 * 3 2 1 5 5 N 1.28465 * 110.22581 * 179.74815 * 3 2 1 6 6 C 1.31804 * 110.07743 * 0.45994 * 5 3 2 7 7 C 1.47715 * 126.52075 * 179.82007 * 6 5 3 8 8 O 1.21571 * 119.99731 * 179.68306 * 7 6 5 9 9 N 1.34774 * 120.00132 * 359.68663 * 7 6 5 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.53002 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 300.00123 * 13 12 10 15 15 C 1.52997 * 109.46978 * 59.99726 * 14 13 12 16 16 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 17 17 H 1.09002 * 109.47153 * 299.99573 * 16 10 9 18 18 C 1.53000 * 109.47060 * 59.99892 * 16 10 9 19 19 N 1.46497 * 109.46926 * 185.00195 * 18 16 10 20 20 C 1.36942 * 120.00334 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99377 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00013 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99387 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47042 * 89.99834 * 24 22 20 26 26 H 1.48503 * 109.46850 * 209.99638 * 24 22 20 27 27 H 1.48493 * 109.46892 * 329.99649 * 24 22 20 28 28 C 1.35362 * 126.38759 * 180.02562 * 2 1 3 29 29 C 1.50694 * 127.24615 * 359.97107 * 28 2 1 30 30 H 1.09008 * 109.47202 * 269.97175 * 1 2 3 31 31 H 1.09002 * 109.47564 * 29.97204 * 1 2 3 32 32 H 1.09005 * 109.46987 * 149.97714 * 1 2 3 33 33 H 0.97004 * 119.99693 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 35 35 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 36 36 H 1.08996 * 109.47407 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47596 * 60.00070 * 13 12 10 38 38 H 1.09002 * 109.47097 * 299.99925 * 14 13 12 39 39 H 1.08998 * 109.47844 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47140 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47497 * 60.00450 * 15 14 13 42 42 H 1.09002 * 109.47069 * 304.99600 * 18 16 10 43 43 H 1.08991 * 109.47625 * 64.99919 * 18 16 10 44 44 H 0.97005 * 120.00366 * 359.97438 * 19 18 16 45 45 H 0.96997 * 119.99494 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.47654 * 270.02482 * 29 28 2 47 47 H 1.09000 * 109.47254 * 30.03013 * 29 28 2 48 48 H 1.09004 * 109.46956 * 150.02736 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9964 2.0058 0.0006 5 7 3.5419 0.7297 0.0053 6 6 3.6321 -0.5852 -0.0009 7 6 4.8765 -1.3810 -0.0015 8 8 4.8214 -2.5955 -0.0018 9 7 6.0731 -0.7608 -0.0017 10 6 7.3073 -1.5499 -0.0029 11 1 7.1602 -2.4553 0.5861 12 6 7.6684 -1.9297 -1.4402 13 6 8.9571 -2.7544 -1.4414 14 6 10.0917 -1.9287 -0.8317 15 6 9.7305 -1.5489 0.6057 16 6 8.4415 -0.7237 0.6067 17 1 8.5887 0.1817 0.0178 18 6 8.0803 -0.3440 2.0442 19 7 9.1096 0.5456 2.5876 20 6 8.9990 1.0195 3.8676 21 1 8.1530 0.7369 4.4766 22 6 9.9746 1.8620 4.3826 23 7 9.8679 2.3177 5.6128 24 14 11.4381 2.3500 3.3294 25 1 11.1160 3.5899 2.5783 26 1 12.6164 2.5909 4.2005 27 1 11.7454 1.2571 2.3721 28 6 2.3100 -1.0897 -0.0005 29 6 1.8854 -2.5356 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 6.1170 0.2083 -0.0018 34 1 7.8155 -1.0244 -2.0292 35 1 6.8604 -2.5184 -1.8745 36 1 9.2147 -3.0246 -2.4654 37 1 8.8097 -3.6598 -0.8526 38 1 10.2392 -1.0233 -1.4205 39 1 11.0099 -2.5159 -0.8329 40 1 10.5385 -0.9602 1.0400 41 1 9.5830 -2.4541 1.1947 42 1 7.1171 0.1662 2.0541 43 1 8.0203 -1.2453 2.6540 44 1 9.8697 0.7991 2.0407 45 1 10.5498 2.9061 5.9728 46 1 1.7830 -2.8843 1.0271 47 1 0.9292 -2.6334 -0.5144 48 1 2.6370 -3.1350 -0.5144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:15 Heat of formation + Delta-G solvation = 22.527836 kcal Electronic energy + Delta-G solvation = -27510.581788 eV Core-core repulsion = 23794.194310 eV Total energy + Delta-G solvation = -3716.387478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.85964 -39.90842 -38.06893 -34.76128 -34.24802 -33.54884 -32.61383 -31.89491 -29.99830 -29.60403 -28.35506 -26.28373 -25.51861 -24.26047 -22.70647 -21.71893 -20.66885 -20.27370 -20.07289 -19.47527 -17.79128 -17.65239 -16.79383 -16.13828 -16.02959 -14.88623 -14.67141 -14.40984 -14.26350 -14.11457 -14.01639 -13.69470 -13.39044 -13.27131 -13.21187 -12.95360 -12.85497 -12.69582 -12.52635 -12.45584 -12.12608 -12.01644 -11.63070 -11.17724 -11.02302 -10.94191 -10.89196 -10.76423 -10.45290 -10.30275 -10.09943 -9.97989 -9.79882 -9.54100 -9.45857 -8.90878 -8.84342 -8.76463 -7.18136 -5.73327 -3.08157 1.51400 1.91220 2.66402 3.26287 3.38670 3.41197 3.46480 3.46682 4.34203 4.42633 4.61725 4.68895 4.73958 4.87729 4.98743 5.06756 5.11630 5.18216 5.20963 5.32664 5.44894 5.52974 5.54361 5.58573 5.59595 5.61623 5.68469 5.72639 5.82212 5.85423 5.88680 6.04371 6.10807 6.14031 6.20408 6.23899 6.32110 6.39873 6.50173 6.54744 6.60778 6.75402 6.81113 6.87290 7.53666 7.81571 8.04064 8.32033 8.45901 9.25410 9.97630 10.18034 11.45420 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.003648 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.545580 B = 7673.229073 C = 9498.089490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.004 3.996 3 N -0.380 5.380 4 H 0.445 0.555 5 N -0.252 5.252 6 C -0.010 4.010 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.155 3.845 11 H 0.091 0.909 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.104 4.104 17 H 0.074 0.926 18 C 0.162 3.838 19 N -0.754 5.754 20 C -0.240 4.240 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.145 4.145 29 C -0.077 4.077 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.408 0.592 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -6.979 -17.839 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 N -0.094 5.094 4 H 0.289 0.711 5 N -0.088 5.088 6 C -0.171 4.171 7 C 0.390 3.610 8 O -0.409 6.409 9 N -0.357 5.357 10 C 0.051 3.949 11 H 0.109 0.891 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.124 4.124 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.400 5.400 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.155 4.155 29 C -0.135 4.135 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.447 -6.899 -17.593 24.407 hybrid contribution 0.495 1.009 -0.519 1.238 sum -14.952 -5.890 -18.111 24.213 Atomic orbital electron populations 1.20332 0.86635 1.03751 1.03364 1.21197 0.95210 0.86968 1.08768 1.43192 1.02955 1.09471 1.53786 0.71095 1.73576 1.01591 1.14948 1.18698 1.21879 0.94968 0.89662 1.10563 1.16834 0.81626 0.86395 0.76169 1.90749 1.86721 1.12766 1.50671 1.45948 1.04995 1.11011 1.73793 1.21004 0.82464 0.95099 0.96355 0.89073 1.21903 0.97799 1.00247 0.96559 1.21480 0.94471 0.98638 1.00629 1.21604 0.97849 0.99829 0.96675 1.21527 0.96988 1.00140 0.96028 1.21655 0.94255 0.98394 0.98056 0.90736 1.20652 0.92254 0.93470 0.90121 1.42712 1.25292 1.57639 1.14357 1.19070 1.07159 1.22330 0.88453 0.89348 1.24666 0.98503 0.99923 0.96179 1.69708 1.36032 1.38033 1.14653 0.86548 0.83587 0.78458 0.79945 1.21170 1.21791 1.20280 1.20100 0.90657 0.96641 1.08134 1.20180 1.01139 0.89773 1.02415 0.90271 0.91209 0.89605 0.75687 0.91925 0.91573 0.92114 0.91716 0.92125 0.92045 0.90895 0.91548 0.95354 0.95522 0.80673 0.93137 0.91400 0.92195 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.26 36.01 0.37 -0.05 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.38 -3.63 6.83 33.50 0.23 -3.40 16 4 H 0.44 2.60 8.96 -190.44 -1.71 0.90 16 5 N -0.25 -3.29 11.92 33.42 0.40 -2.89 16 6 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 7 C 0.61 9.35 7.79 -12.39 -0.10 9.25 16 8 O -0.53 -9.18 14.78 5.30 0.08 -9.10 16 9 N -0.71 -10.14 4.30 -54.80 -0.24 -10.38 16 10 C 0.16 2.19 1.90 -67.94 -0.13 2.06 16 11 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 12 C -0.13 -1.54 5.49 -26.73 -0.15 -1.69 16 13 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.11 -1.59 5.08 -26.71 -0.14 -1.73 16 16 C -0.10 -1.61 1.81 -90.60 -0.16 -1.77 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.16 3.23 5.57 -4.04 -0.02 3.21 16 19 N -0.75 -18.13 5.13 -59.91 -0.31 -18.44 16 20 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -29.89 13.97 55.49 0.78 -29.12 16 24 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 28 C -0.15 -1.75 6.25 -104.41 -0.65 -2.40 16 29 C -0.08 -0.81 9.73 36.00 0.35 -0.46 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.38 7.31 -51.93 -0.38 0.00 16 33 H 0.41 5.69 8.12 -40.82 -0.33 5.36 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.36 8.38 4.71 -40.82 -0.19 8.18 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 48 H 0.08 1.00 6.72 -51.93 -0.35 0.66 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -35.11 380.73 -9.57 -44.68 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -9.15 Total: 10.30 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.38 Total: -5.01 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 0.86 Total: -64.23 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.11 -9.57 -44.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.208 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds