Wall clock time and date at job start Tue Mar 31 2020 12:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35034 * 126.38121 * 2 1 4 4 H 0.97002 * 124.88378 * 0.04546 * 3 2 1 5 5 N 1.28465 * 110.22581 * 179.74815 * 3 2 1 6 6 C 1.31804 * 110.07743 * 0.45994 * 5 3 2 7 7 C 1.47715 * 126.52075 * 179.82007 * 6 5 3 8 8 O 1.21571 * 119.99731 * 179.68306 * 7 6 5 9 9 N 1.34774 * 120.00132 * 359.68663 * 7 6 5 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.53002 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 300.00123 * 13 12 10 15 15 C 1.52997 * 109.46978 * 59.99726 * 14 13 12 16 16 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 17 17 H 1.09002 * 109.47153 * 299.99573 * 16 10 9 18 18 C 1.53000 * 109.47060 * 59.99892 * 16 10 9 19 19 N 1.46497 * 109.46926 * 185.00195 * 18 16 10 20 20 C 1.36942 * 120.00334 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99377 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00013 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99387 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47042 * 89.99834 * 24 22 20 26 26 H 1.48503 * 109.46850 * 209.99638 * 24 22 20 27 27 H 1.48493 * 109.46892 * 329.99649 * 24 22 20 28 28 C 1.35362 * 126.38759 * 180.02562 * 2 1 3 29 29 C 1.50694 * 127.24615 * 359.97107 * 28 2 1 30 30 H 1.09008 * 109.47202 * 269.97175 * 1 2 3 31 31 H 1.09002 * 109.47564 * 29.97204 * 1 2 3 32 32 H 1.09005 * 109.46987 * 149.97714 * 1 2 3 33 33 H 0.97004 * 119.99693 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 35 35 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 36 36 H 1.08996 * 109.47407 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47596 * 60.00070 * 13 12 10 38 38 H 1.09002 * 109.47097 * 299.99925 * 14 13 12 39 39 H 1.08998 * 109.47844 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47140 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47497 * 60.00450 * 15 14 13 42 42 H 1.09002 * 109.47069 * 304.99600 * 18 16 10 43 43 H 1.08991 * 109.47625 * 64.99919 * 18 16 10 44 44 H 0.97005 * 120.00366 * 359.97438 * 19 18 16 45 45 H 0.96997 * 119.99494 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.47654 * 270.02482 * 29 28 2 47 47 H 1.09000 * 109.47254 * 30.03013 * 29 28 2 48 48 H 1.09004 * 109.46956 * 150.02736 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9964 2.0058 0.0006 5 7 3.5419 0.7297 0.0053 6 6 3.6321 -0.5852 -0.0009 7 6 4.8765 -1.3810 -0.0015 8 8 4.8214 -2.5955 -0.0018 9 7 6.0731 -0.7608 -0.0017 10 6 7.3073 -1.5499 -0.0029 11 1 7.1602 -2.4553 0.5861 12 6 7.6684 -1.9297 -1.4402 13 6 8.9571 -2.7544 -1.4414 14 6 10.0917 -1.9287 -0.8317 15 6 9.7305 -1.5489 0.6057 16 6 8.4415 -0.7237 0.6067 17 1 8.5887 0.1817 0.0178 18 6 8.0803 -0.3440 2.0442 19 7 9.1096 0.5456 2.5876 20 6 8.9990 1.0195 3.8676 21 1 8.1530 0.7369 4.4766 22 6 9.9746 1.8620 4.3826 23 7 9.8679 2.3177 5.6128 24 14 11.4381 2.3500 3.3294 25 1 11.1160 3.5899 2.5783 26 1 12.6164 2.5909 4.2005 27 1 11.7454 1.2571 2.3721 28 6 2.3100 -1.0897 -0.0005 29 6 1.8854 -2.5356 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 6.1170 0.2083 -0.0018 34 1 7.8155 -1.0244 -2.0292 35 1 6.8604 -2.5184 -1.8745 36 1 9.2147 -3.0246 -2.4654 37 1 8.8097 -3.6598 -0.8526 38 1 10.2392 -1.0233 -1.4205 39 1 11.0099 -2.5159 -0.8329 40 1 10.5385 -0.9602 1.0400 41 1 9.5830 -2.4541 1.1947 42 1 7.1171 0.1662 2.0541 43 1 8.0203 -1.2453 2.6540 44 1 9.8697 0.7991 2.0407 45 1 10.5498 2.9061 5.9728 46 1 1.7830 -2.8843 1.0271 47 1 0.9292 -2.6334 -0.5144 48 1 2.6370 -3.1350 -0.5144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:14 Heat of formation + Delta-G solvation = -2.142783 kcal Electronic energy + Delta-G solvation = -27511.651586 eV Core-core repulsion = 23794.194310 eV Total energy + Delta-G solvation = -3717.457277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.72600 -41.09815 -39.28826 -36.59862 -35.32943 -34.39021 -33.86333 -33.45124 -31.63279 -30.65007 -29.15002 -27.17567 -27.01596 -25.32291 -24.44682 -22.91302 -22.12095 -21.35967 -20.95231 -20.59401 -19.73972 -18.56643 -17.93177 -17.21887 -17.01897 -16.63381 -16.15774 -15.69056 -15.53297 -15.43543 -14.89250 -14.76948 -14.69806 -14.62916 -14.28803 -14.02800 -13.88368 -13.71199 -13.68124 -13.57822 -13.05377 -12.99732 -12.91827 -12.77690 -12.66976 -12.21849 -12.17015 -11.92931 -11.86111 -11.80441 -11.54551 -11.37982 -11.19207 -11.03851 -10.89822 -10.40236 -9.97949 -9.64810 -9.31973 -8.04732 -5.38879 0.50119 1.08594 1.36228 1.40839 1.48314 1.87442 2.23534 2.34582 2.47084 3.26187 3.35881 3.43068 3.72951 3.77160 3.85440 3.96366 4.06222 4.22683 4.28219 4.30086 4.35689 4.42404 4.44596 4.51933 4.55268 4.75034 4.82166 4.86447 4.89270 4.92199 5.03308 5.04374 5.08041 5.09251 5.13799 5.22944 5.24469 5.27991 5.29845 5.39790 5.47349 5.56183 5.59196 5.72177 6.11883 6.18819 6.44767 6.86487 7.05455 7.15812 7.79914 8.02449 9.17187 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.003648 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.545580 B = 7673.229073 C = 9498.089490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.024 3.976 3 N -0.366 5.366 4 H 0.460 0.540 5 N -0.274 5.274 6 C -0.041 4.041 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.705 5.705 10 C 0.160 3.840 11 H 0.072 0.928 12 C -0.118 4.118 13 C -0.110 4.110 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.090 4.090 17 H 0.085 0.915 18 C 0.163 3.837 19 N -0.751 5.751 20 C -0.238 4.238 21 H 0.048 0.952 22 C -0.064 4.064 23 N -0.985 5.985 24 Si 0.959 3.041 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.247 1.247 28 C -0.175 4.175 29 C -0.072 4.072 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.011 0.989 44 H 0.368 0.632 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 -6.637 -20.766 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.083 5.083 4 H 0.308 0.692 5 N -0.111 5.111 6 C -0.200 4.200 7 C 0.386 3.614 8 O -0.437 6.437 9 N -0.355 5.355 10 C 0.056 3.944 11 H 0.090 0.910 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.109 4.109 17 H 0.104 0.896 18 C 0.037 3.963 19 N -0.397 5.397 20 C -0.369 4.369 21 H 0.066 0.934 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.785 3.215 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.171 1.171 28 C -0.185 4.185 29 C -0.130 4.130 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.203 0.797 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.709 -6.562 -20.560 26.694 hybrid contribution 0.397 0.914 0.488 1.109 sum -15.312 -5.648 -20.072 25.870 Atomic orbital electron populations 1.20537 0.83189 1.05628 1.04619 1.21775 0.96954 0.85743 1.05756 1.43325 1.02160 1.10620 1.52207 0.69169 1.73490 1.03383 1.14539 1.19710 1.21860 0.95242 0.90324 1.12607 1.17122 0.82320 0.86323 0.75642 1.90719 1.87187 1.13808 1.52000 1.45959 1.04986 1.11051 1.73511 1.20944 0.81912 0.93960 0.97624 0.90995 1.21832 0.98310 1.00850 0.94634 1.21476 0.93355 0.98055 1.01918 1.21558 0.98628 1.00616 0.94361 1.21522 0.95601 0.99345 0.98259 1.21522 0.95363 0.99267 0.94761 0.89649 1.20722 0.90973 0.91823 0.92813 1.42622 1.26436 1.57918 1.12754 1.18997 1.05830 1.22088 0.89992 0.93434 1.25559 1.02107 1.00162 0.97664 1.69904 1.37445 1.39176 1.17032 0.85362 0.78714 0.79038 0.78409 1.20147 1.22133 1.17114 1.20443 0.90330 0.98115 1.09615 1.20139 1.01881 0.88704 1.02242 0.89141 0.88728 0.88364 0.75490 0.90775 0.92221 0.89792 0.92068 0.91116 0.90522 0.92458 0.92189 0.96260 0.97129 0.79745 0.93253 0.91818 0.89132 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.26 71.24 0.73 0.16 16 2 C 0.02 0.41 7.23 41.40 0.30 0.70 16 3 N -0.37 -6.52 6.83 -47.93 -0.33 -6.85 16 4 H 0.46 4.54 8.96 -219.99 -1.97 2.57 16 5 N -0.27 -7.13 11.92 -48.17 -0.57 -7.71 16 6 C -0.04 -1.18 7.13 42.46 0.30 -0.88 16 7 C 0.60 19.30 7.79 86.75 0.68 19.97 16 8 O -0.56 -20.17 14.78 -3.94 -0.06 -20.23 16 9 N -0.71 -20.72 4.30 -445.55 -1.92 -22.63 16 10 C 0.16 4.52 1.90 44.99 0.09 4.60 16 11 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 12 C -0.12 -2.69 5.49 30.59 0.17 -2.52 16 13 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 14 C -0.11 -2.37 5.92 30.59 0.18 -2.18 16 15 C -0.11 -3.04 5.08 30.61 0.16 -2.89 16 16 C -0.09 -2.72 1.81 -10.78 -0.02 -2.74 16 17 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 18 C 0.16 6.64 5.57 86.38 0.48 7.13 16 19 N -0.75 -36.24 5.13 -343.46 -1.76 -38.01 16 20 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.99 -64.62 13.97 21.65 0.30 -64.32 16 24 Si 0.96 45.83 27.74 68.60 1.90 47.74 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.25 -10.49 6.52 99.48 0.65 -9.84 16 28 C -0.17 -4.16 6.25 -19.73 -0.12 -4.28 16 29 C -0.07 -1.49 9.73 71.23 0.69 -0.80 16 30 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.10 0.50 7.31 -2.38 -0.02 0.49 16 33 H 0.41 11.64 8.12 -92.71 -0.75 10.89 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.78 7.18 -2.39 -0.02 1.77 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.02 0.83 7.31 -2.39 -0.02 0.81 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.37 16.57 4.71 -92.70 -0.44 16.13 16 45 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.23 7.31 -2.39 -0.02 1.21 16 48 H 0.06 1.51 6.72 -2.38 -0.02 1.49 16 Total: -1.00 -79.33 380.73 0.49 -78.84 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -2.23 Total: 35.53 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.16 Total: -2.36 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -4.28 Total: -139.51 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.06 Total: -20.23 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.74 kcal Total: -79.33 0.49 -78.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.693 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds