Wall clock time and date at job start Tue Mar 31 2020 12:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35032 * 126.38808 * 2 1 4 4 H 0.96993 * 124.88579 * 0.02562 * 3 2 1 5 5 N 1.28468 * 110.23036 * 179.70623 * 3 2 1 6 6 C 1.31811 * 110.07396 * 0.45164 * 5 3 2 7 7 C 1.47716 * 126.52030 * 179.82094 * 6 5 3 8 8 O 1.21563 * 119.99970 * 179.69327 * 7 6 5 9 9 N 1.34774 * 119.99897 * 359.68943 * 7 6 5 10 10 C 1.46496 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47059 * 35.00189 * 10 9 7 12 12 C 1.52997 * 109.46941 * 275.00029 * 10 9 7 13 13 C 1.53006 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 17 17 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 18 18 C 1.52997 * 109.46975 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47391 * 294.99824 * 18 16 15 20 20 C 1.36939 * 120.00451 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00077 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46497 * 60.00614 * 24 22 20 26 26 H 1.48503 * 109.46948 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47373 * 300.00667 * 24 22 20 28 28 C 1.35368 * 126.38246 * 179.97438 * 2 1 3 29 29 C 1.50707 * 127.25175 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.47453 * 270.02488 * 1 2 3 31 31 H 1.09000 * 109.47208 * 30.02990 * 1 2 3 32 32 H 1.09004 * 109.47499 * 150.02848 * 1 2 3 33 33 H 0.97011 * 119.99657 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47375 * 299.99966 * 12 10 9 35 35 H 1.09000 * 109.47140 * 59.99984 * 12 10 9 36 36 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 37 37 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 40 40 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 42 42 H 1.09004 * 109.47610 * 54.99797 * 18 16 15 43 43 H 1.09001 * 109.47532 * 174.99616 * 18 16 15 44 44 H 0.97002 * 119.99938 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00085 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.46623 * 270.02617 * 29 28 2 47 47 H 1.09002 * 109.46875 * 30.02109 * 29 28 2 48 48 H 1.08993 * 109.47147 * 150.02237 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3080 1.0870 0.0000 4 1 1.9966 2.0056 0.0004 5 7 3.5419 0.7295 0.0062 6 6 3.6320 -0.5855 0.0008 7 6 4.8764 -1.3814 0.0013 8 8 4.8212 -2.5958 0.0016 9 7 6.0730 -0.7612 0.0015 10 6 7.3071 -1.5504 0.0015 11 1 7.1597 -2.4553 -0.5881 12 6 7.6689 -1.9313 1.4385 13 6 8.9576 -2.7562 1.4385 14 6 10.0919 -1.9301 0.8288 15 6 9.7300 -1.5491 -0.6081 16 6 8.4415 -0.7243 -0.6081 17 1 8.5893 0.1805 -0.0186 18 6 8.0794 -0.3439 -2.0451 19 7 9.1087 0.5453 -2.5891 20 6 8.9973 1.0195 -3.8689 21 1 8.1507 0.7376 -4.4774 22 6 9.9723 1.8625 -4.3841 23 7 11.0043 2.2056 -3.6427 24 14 9.8206 2.5088 -6.1302 25 1 8.5648 3.2906 -6.2611 26 1 10.9821 3.3817 -6.4376 27 1 9.7946 1.3676 -7.0800 28 6 2.3099 -1.0898 0.0005 29 6 1.8852 -2.5358 0.0006 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8903 -0.5134 33 1 6.1169 0.2079 0.0017 34 1 7.8163 -1.0265 2.0281 35 1 6.8610 -2.5203 1.8726 36 1 8.8096 -3.6610 0.8490 37 1 9.2150 -3.0279 2.4621 38 1 11.0098 -2.5179 0.8284 39 1 10.2397 -1.0252 1.4183 40 1 10.5384 -0.9610 -1.0426 41 1 9.5822 -2.4540 -1.1977 42 1 8.0185 -1.2452 -2.6552 43 1 7.1164 0.1667 -2.0542 44 1 9.8693 0.7982 -2.0427 45 1 11.6859 2.7943 -4.0029 46 1 1.7821 -2.8840 1.0282 47 1 0.9293 -2.6338 -0.5139 48 1 2.6371 -3.1353 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:18 Heat of formation + Delta-G solvation = 18.458726 kcal Electronic energy + Delta-G solvation = -27438.751556 eV Core-core repulsion = 23722.187628 eV Total energy + Delta-G solvation = -3716.563928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.84702 -39.82591 -37.97302 -34.55726 -34.19051 -33.52367 -32.59649 -31.82399 -29.66670 -29.37259 -28.30724 -26.27610 -25.26685 -24.19980 -22.93562 -21.73087 -20.55912 -20.22427 -20.03709 -19.36198 -17.75664 -17.28280 -16.64144 -16.12468 -15.92886 -14.89492 -14.53133 -14.46409 -14.14740 -14.08475 -13.80251 -13.61426 -13.33074 -13.21161 -13.17104 -12.97268 -12.91750 -12.60305 -12.48004 -12.32165 -12.10839 -11.75922 -11.46022 -11.03248 -10.88120 -10.83286 -10.82913 -10.65044 -10.34290 -10.20308 -10.04989 -9.91522 -9.73889 -9.57364 -9.44361 -8.86262 -8.82470 -8.71079 -6.85861 -5.72118 -2.99799 1.53186 1.92228 2.67625 3.31650 3.46829 3.49630 3.50887 3.52170 4.36437 4.43337 4.61683 4.70958 4.89500 4.98814 5.06853 5.10660 5.11506 5.25698 5.33594 5.44341 5.44660 5.55139 5.62860 5.66413 5.71494 5.71985 5.75369 5.82643 5.86728 5.96698 6.06136 6.18831 6.23221 6.27940 6.32619 6.35850 6.42163 6.47242 6.63751 6.66356 6.76672 6.82532 6.88700 6.99492 7.57488 7.74518 7.84915 8.36468 8.47348 9.58364 10.16925 10.52138 11.50853 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.003700 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.213532 B = 7566.653597 C = 9804.753911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.003 3.997 3 N -0.380 5.380 4 H 0.444 0.556 5 N -0.252 5.252 6 C -0.009 4.009 7 C 0.604 3.396 8 O -0.535 6.535 9 N -0.706 5.706 10 C 0.154 3.846 11 H 0.089 0.911 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.106 4.106 16 C -0.100 4.100 17 H 0.075 0.925 18 C 0.158 3.842 19 N -0.730 5.730 20 C -0.236 4.236 21 H 0.068 0.932 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.146 4.146 29 C -0.077 4.077 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.408 0.592 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 -6.516 13.218 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 N -0.095 5.095 4 H 0.289 0.711 5 N -0.088 5.088 6 C -0.170 4.170 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.356 5.356 10 C 0.050 3.950 11 H 0.107 0.893 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.119 4.119 17 H 0.093 0.907 18 C 0.030 3.970 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.584 5.584 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.156 4.156 29 C -0.135 4.135 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.687 -6.435 13.043 22.899 hybrid contribution -0.417 1.042 -0.865 1.417 sum -18.105 -5.393 12.178 22.476 Atomic orbital electron populations 1.20325 0.86657 1.03889 1.03184 1.21193 0.95192 0.86987 1.08829 1.43192 1.02969 1.09451 1.53838 0.71123 1.73591 1.01540 1.14965 1.18713 1.21909 0.95006 0.89648 1.10436 1.16838 0.81648 0.86397 0.76267 1.90743 1.86727 1.12773 1.50794 1.45967 1.05020 1.11042 1.73560 1.21040 0.82558 0.95071 0.96339 0.89282 1.21899 0.97757 1.00227 0.96591 1.21483 0.94579 0.98605 1.00549 1.21600 0.97652 0.99771 0.96876 1.21491 0.97257 0.99931 0.95767 1.21586 0.94015 0.98308 0.97977 0.90697 1.20672 0.92543 0.93425 0.90321 1.42351 1.25227 1.55908 1.13979 1.19187 1.05346 1.22239 0.89986 0.91413 1.24704 0.97292 1.00758 0.98237 1.69644 1.12395 1.40092 1.36242 0.86285 0.76753 0.78515 0.84755 1.21388 1.21709 1.21313 1.20108 0.90670 0.96632 1.08156 1.20178 1.01307 0.89812 1.02191 0.90410 0.91162 0.89573 0.75687 0.91917 0.91740 0.91862 0.92211 0.92124 0.92048 0.90253 0.92016 0.96400 0.96245 0.78231 0.93548 0.91585 0.92154 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.26 36.00 0.37 -0.06 16 2 C 0.00 0.03 7.23 -82.21 -0.59 -0.56 16 3 N -0.38 -3.68 6.83 33.50 0.23 -3.45 16 4 H 0.44 2.64 8.96 -190.45 -1.71 0.93 16 5 N -0.25 -3.34 11.92 33.42 0.40 -2.95 16 6 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 7 C 0.60 9.59 7.79 -12.39 -0.10 9.49 16 8 O -0.54 -9.41 14.78 5.31 0.08 -9.33 16 9 N -0.71 -10.58 4.30 -54.79 -0.24 -10.82 16 10 C 0.15 2.30 1.90 -67.93 -0.13 2.17 16 11 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 12 C -0.13 -1.64 5.49 -26.73 -0.15 -1.79 16 13 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 14 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 15 C -0.11 -1.68 5.08 -26.73 -0.14 -1.82 16 16 C -0.10 -1.64 1.81 -90.62 -0.16 -1.81 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.16 3.30 5.56 -4.04 -0.02 3.27 16 19 N -0.73 -18.70 5.33 -59.91 -0.32 -19.02 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 24 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.15 -1.78 6.25 -104.40 -0.65 -2.43 16 29 C -0.08 -0.81 9.74 36.01 0.35 -0.46 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.40 7.31 -51.93 -0.38 0.02 16 33 H 0.41 6.00 8.12 -40.82 -0.33 5.67 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.44 7.18 -51.93 -0.37 1.07 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 44 H 0.38 10.20 6.85 -40.82 -0.28 9.92 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.48 7.31 -51.93 -0.38 0.10 16 48 H 0.08 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -34.02 383.84 -9.93 -43.95 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -9.19 Total: 11.15 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.37 Total: -5.37 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 0.80 Total: -63.98 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.02 -9.93 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.410 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds