Wall clock time and date at job start Tue Mar 31 2020 12:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35032 * 126.38808 * 2 1 4 4 H 0.96993 * 124.88579 * 0.02562 * 3 2 1 5 5 N 1.28468 * 110.23036 * 179.70623 * 3 2 1 6 6 C 1.31811 * 110.07396 * 0.45164 * 5 3 2 7 7 C 1.47716 * 126.52030 * 179.82094 * 6 5 3 8 8 O 1.21563 * 119.99970 * 179.69327 * 7 6 5 9 9 N 1.34774 * 119.99897 * 359.68943 * 7 6 5 10 10 C 1.46496 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47059 * 35.00189 * 10 9 7 12 12 C 1.52997 * 109.46941 * 275.00029 * 10 9 7 13 13 C 1.53006 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 17 17 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 18 18 C 1.52997 * 109.46975 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47391 * 294.99824 * 18 16 15 20 20 C 1.36939 * 120.00451 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00077 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46497 * 60.00614 * 24 22 20 26 26 H 1.48503 * 109.46948 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47373 * 300.00667 * 24 22 20 28 28 C 1.35368 * 126.38246 * 179.97438 * 2 1 3 29 29 C 1.50707 * 127.25175 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.47453 * 270.02488 * 1 2 3 31 31 H 1.09000 * 109.47208 * 30.02990 * 1 2 3 32 32 H 1.09004 * 109.47499 * 150.02848 * 1 2 3 33 33 H 0.97011 * 119.99657 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47375 * 299.99966 * 12 10 9 35 35 H 1.09000 * 109.47140 * 59.99984 * 12 10 9 36 36 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 37 37 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 40 40 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 42 42 H 1.09004 * 109.47610 * 54.99797 * 18 16 15 43 43 H 1.09001 * 109.47532 * 174.99616 * 18 16 15 44 44 H 0.97002 * 119.99938 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00085 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.46623 * 270.02617 * 29 28 2 47 47 H 1.09002 * 109.46875 * 30.02109 * 29 28 2 48 48 H 1.08993 * 109.47147 * 150.02237 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3080 1.0870 0.0000 4 1 1.9966 2.0056 0.0004 5 7 3.5419 0.7295 0.0062 6 6 3.6320 -0.5855 0.0008 7 6 4.8764 -1.3814 0.0013 8 8 4.8212 -2.5958 0.0016 9 7 6.0730 -0.7612 0.0015 10 6 7.3071 -1.5504 0.0015 11 1 7.1597 -2.4553 -0.5881 12 6 7.6689 -1.9313 1.4385 13 6 8.9576 -2.7562 1.4385 14 6 10.0919 -1.9301 0.8288 15 6 9.7300 -1.5491 -0.6081 16 6 8.4415 -0.7243 -0.6081 17 1 8.5893 0.1805 -0.0186 18 6 8.0794 -0.3439 -2.0451 19 7 9.1087 0.5453 -2.5891 20 6 8.9973 1.0195 -3.8689 21 1 8.1507 0.7376 -4.4774 22 6 9.9723 1.8625 -4.3841 23 7 11.0043 2.2056 -3.6427 24 14 9.8206 2.5088 -6.1302 25 1 8.5648 3.2906 -6.2611 26 1 10.9821 3.3817 -6.4376 27 1 9.7946 1.3676 -7.0800 28 6 2.3099 -1.0898 0.0005 29 6 1.8852 -2.5358 0.0006 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8903 -0.5134 33 1 6.1169 0.2079 0.0017 34 1 7.8163 -1.0265 2.0281 35 1 6.8610 -2.5203 1.8726 36 1 8.8096 -3.6610 0.8490 37 1 9.2150 -3.0279 2.4621 38 1 11.0098 -2.5179 0.8284 39 1 10.2397 -1.0252 1.4183 40 1 10.5384 -0.9610 -1.0426 41 1 9.5822 -2.4540 -1.1977 42 1 8.0185 -1.2452 -2.6552 43 1 7.1164 0.1667 -2.0542 44 1 9.8693 0.7982 -2.0427 45 1 11.6859 2.7943 -4.0029 46 1 1.7821 -2.8840 1.0282 47 1 0.9293 -2.6338 -0.5139 48 1 2.6371 -3.1353 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:18 Heat of formation + Delta-G solvation = -4.574627 kcal Electronic energy + Delta-G solvation = -27439.750358 eV Core-core repulsion = 23722.187628 eV Total energy + Delta-G solvation = -3717.562729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72240 -41.07829 -39.25377 -36.43973 -35.32066 -34.38509 -33.71008 -33.43793 -31.23287 -30.61071 -29.13283 -27.04083 -26.99325 -25.32278 -24.73825 -22.94936 -22.00402 -21.35128 -20.94561 -20.55525 -19.26902 -18.55775 -17.88579 -17.19262 -17.01213 -16.73045 -15.92747 -15.75071 -15.45256 -15.29697 -15.09221 -14.76451 -14.72149 -14.56701 -14.14046 -13.96027 -13.87716 -13.64086 -13.58485 -13.32727 -12.99581 -12.94931 -12.91625 -12.74077 -12.68535 -12.23247 -12.14212 -11.94004 -11.87171 -11.79844 -11.53331 -11.36744 -11.15580 -11.00672 -10.86435 -10.39860 -9.96908 -9.64218 -9.00555 -7.96313 -5.24895 0.50435 1.09115 1.44747 1.47880 1.54221 1.87923 2.24204 2.34926 2.54199 3.36325 3.38482 3.55552 3.75400 3.79080 3.92969 4.05448 4.10032 4.24653 4.29390 4.35190 4.40030 4.44745 4.49687 4.53133 4.57373 4.76078 4.84086 4.87931 4.89582 4.93032 5.04475 5.05266 5.09369 5.11529 5.15153 5.24032 5.25682 5.29576 5.31245 5.43550 5.45865 5.49472 5.56895 5.60596 6.12531 6.25774 6.45459 6.86845 7.16075 7.32593 8.07127 8.33444 9.26724 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.003700 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.213532 B = 7566.653597 C = 9804.753911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.024 3.976 3 N -0.366 5.366 4 H 0.460 0.540 5 N -0.275 5.275 6 C -0.040 4.040 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.705 5.705 10 C 0.162 3.838 11 H 0.073 0.927 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.104 4.104 16 C -0.085 4.085 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.738 5.738 20 C -0.250 4.250 21 H 0.067 0.933 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.280 1.280 28 C -0.174 4.174 29 C -0.072 4.072 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.007 0.993 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.253 0.747 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 -6.280 13.896 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 N -0.083 5.083 4 H 0.308 0.692 5 N -0.112 5.112 6 C -0.200 4.200 7 C 0.386 3.614 8 O -0.437 6.437 9 N -0.354 5.354 10 C 0.057 3.943 11 H 0.091 0.909 12 C -0.157 4.157 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.104 4.104 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.381 5.381 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.800 3.200 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.184 4.184 29 C -0.130 4.130 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.670 -6.197 13.729 24.775 hybrid contribution 0.089 0.992 -1.085 1.473 sum -19.581 -5.205 12.644 23.882 Atomic orbital electron populations 1.20535 0.83150 1.05461 1.04799 1.21775 0.96951 0.85714 1.05757 1.43324 1.02139 1.10624 1.52205 0.69173 1.73507 1.03391 1.14558 1.19747 1.21849 0.95203 0.90311 1.12619 1.17133 0.82281 0.86344 0.75661 1.90714 1.87178 1.13784 1.52044 1.45971 1.05017 1.11011 1.73448 1.20933 0.81946 0.93908 0.97520 0.90905 1.21835 0.98321 1.00743 0.94760 1.21469 0.93274 0.98011 1.01912 1.21545 0.98677 1.00419 0.94472 1.21431 0.95724 0.99020 0.97999 1.21424 0.95175 0.98752 0.95059 0.90678 1.20731 0.91210 0.91888 0.92721 1.42481 1.25928 1.56413 1.13295 1.19535 1.05269 1.22158 0.91192 0.91477 1.25510 0.97121 1.01355 1.02256 1.69796 1.13078 1.40801 1.37928 0.85245 0.76781 0.77900 0.80027 1.20520 1.21690 1.20592 1.20446 0.90259 0.98136 1.09604 1.20139 1.01673 0.88653 1.02485 0.88606 0.88982 0.88614 0.75595 0.91079 0.92022 0.91902 0.89738 0.90665 0.91566 0.92991 0.92410 0.97539 0.96711 0.79035 0.93867 0.91112 0.89409 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.26 71.23 0.73 0.19 16 2 C 0.02 0.41 7.23 41.40 0.30 0.71 16 3 N -0.37 -6.51 6.83 -47.93 -0.33 -6.84 16 4 H 0.46 4.50 8.96 -220.00 -1.97 2.53 16 5 N -0.28 -7.23 11.92 -48.17 -0.57 -7.80 16 6 C -0.04 -1.18 7.13 42.46 0.30 -0.88 16 7 C 0.60 19.72 7.79 86.75 0.68 20.40 16 8 O -0.56 -20.49 14.78 -3.91 -0.06 -20.55 16 9 N -0.70 -21.78 4.30 -445.55 -1.92 -23.70 16 10 C 0.16 4.90 1.90 44.99 0.09 4.99 16 11 H 0.07 2.47 7.58 -2.39 -0.02 2.45 16 12 C -0.12 -2.97 5.49 30.60 0.17 -2.80 16 13 C -0.11 -2.40 5.92 30.60 0.18 -2.22 16 14 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 15 C -0.10 -3.32 5.08 30.59 0.16 -3.17 16 16 C -0.08 -2.87 1.81 -10.80 -0.02 -2.89 16 17 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 18 C 0.16 6.96 5.56 86.38 0.48 7.44 16 19 N -0.74 -38.89 5.33 -343.45 -1.83 -40.72 16 20 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 23 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 24 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 C -0.17 -4.14 6.25 -19.72 -0.12 -4.26 16 29 C -0.07 -1.48 9.74 71.24 0.69 -0.78 16 30 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.10 0.53 7.31 -2.38 -0.02 0.51 16 33 H 0.41 12.41 8.12 -92.70 -0.75 11.65 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.95 7.18 -2.39 -0.02 1.94 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.01 0.66 7.31 -2.39 -0.02 0.64 16 44 H 0.38 20.69 6.85 -92.71 -0.64 20.06 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.09 1.24 7.31 -2.39 -0.02 1.22 16 48 H 0.06 1.47 6.72 -2.39 -0.02 1.45 16 Total: -1.00 -74.95 383.84 0.35 -74.60 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -2.37 Total: 38.41 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 5.12 Total: -3.20 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -4.37 Total: -138.45 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -74.95 0.35 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.023 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds