Wall clock time and date at job start Tue Mar 31 2020 12:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35033 * 126.38802 * 2 1 4 4 H 0.97001 * 124.88719 * 359.97438 * 3 2 1 5 5 N 1.28471 * 110.23261 * 180.28139 * 3 2 1 6 6 C 1.31812 * 110.06874 * 359.73022 * 5 3 2 7 7 C 1.47708 * 126.51437 * 179.97438 * 6 5 3 8 8 O 1.21572 * 119.99920 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00411 * 0.05151 * 7 6 5 10 10 C 1.46495 * 119.99897 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47233 * 324.99171 * 10 9 7 12 12 C 1.52996 * 109.47323 * 84.99744 * 10 9 7 13 13 C 1.53009 * 109.47396 * 59.99501 * 12 10 9 14 14 C 1.53000 * 109.46782 * 60.00045 * 13 12 10 15 15 C 1.52996 * 109.47118 * 300.00125 * 14 13 12 16 16 C 1.53000 * 109.47570 * 60.00360 * 15 14 13 17 17 H 1.09005 * 109.47085 * 59.99278 * 16 15 14 18 18 C 1.52996 * 109.47570 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.46890 * 294.99673 * 18 16 15 20 20 C 1.36940 * 119.99845 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99796 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99882 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99919 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00056 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47296 * 89.99714 * 24 22 20 26 26 H 1.48501 * 109.47304 * 209.99525 * 24 22 20 27 27 H 1.48508 * 109.47389 * 329.99836 * 24 22 20 28 28 C 1.35363 * 126.38425 * 179.81594 * 2 1 3 29 29 C 1.50706 * 127.24805 * 0.02562 * 28 2 1 30 30 H 1.08995 * 109.47556 * 270.17886 * 1 2 3 31 31 H 1.09002 * 109.47055 * 30.18028 * 1 2 3 32 32 H 1.08994 * 109.47283 * 150.17434 * 1 2 3 33 33 H 0.97001 * 119.99773 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47470 * 179.97438 * 12 10 9 35 35 H 1.08998 * 109.47545 * 299.99663 * 12 10 9 36 36 H 1.08993 * 109.46785 * 300.00397 * 13 12 10 37 37 H 1.08999 * 109.47090 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46803 * 179.97438 * 14 13 12 39 39 H 1.09005 * 109.47077 * 59.99923 * 14 13 12 40 40 H 1.08995 * 109.47514 * 299.99743 * 15 14 13 41 41 H 1.09010 * 109.47225 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47297 * 54.99779 * 18 16 15 43 43 H 1.08998 * 109.46999 * 174.99923 * 18 16 15 44 44 H 0.97003 * 120.00128 * 0.02562 * 19 18 16 45 45 H 0.96998 * 119.99944 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.46953 * 269.70252 * 29 28 2 47 47 H 1.09000 * 109.47318 * 29.69850 * 29 28 2 48 48 H 1.09000 * 109.47161 * 149.70481 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 -0.0004 5 7 3.5420 0.7296 -0.0059 6 6 3.6320 -0.5855 -0.0043 7 6 4.8764 -1.3813 -0.0101 8 8 4.8212 -2.5957 -0.0082 9 7 6.0730 -0.7611 -0.0169 10 6 7.3071 -1.5505 -0.0221 11 1 7.1626 -2.4546 0.5694 12 6 7.6617 -1.9331 -1.4603 13 6 7.8646 -0.6640 -2.2906 14 6 9.0017 0.1634 -1.6878 15 6 8.6470 0.5460 -0.2495 16 6 8.4442 -0.7231 0.5807 17 1 9.3625 -1.3104 0.5768 18 6 8.0902 -0.3404 2.0192 19 7 9.2271 0.3481 2.6352 20 6 9.1419 0.7879 3.9293 21 1 8.2366 0.6268 4.4957 22 6 10.2194 1.4397 4.5132 23 7 10.1376 1.8620 5.7571 24 14 11.7854 1.7177 3.5335 25 1 11.7010 3.0195 2.8241 26 1 12.9499 1.7307 4.4549 27 1 11.9502 0.6238 2.5427 28 6 2.3100 -1.0897 0.0035 29 6 1.8853 -2.5357 0.0076 30 1 -0.3634 0.0032 1.0276 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8915 -0.5111 33 1 6.1170 0.2079 -0.0183 34 1 8.5802 -2.5201 -1.4642 35 1 6.8517 -2.5226 -1.8898 36 1 6.9464 -0.0768 -2.2867 37 1 8.1168 -0.9367 -3.3153 38 1 9.1465 1.0672 -2.2795 39 1 9.9199 -0.4240 -1.6915 40 1 7.7288 1.1333 -0.2456 41 1 9.4570 1.1359 0.1799 42 1 7.2233 0.3203 2.0165 43 1 7.8589 -1.2409 2.5882 44 1 10.0401 0.4931 2.1262 45 1 10.8904 2.3178 6.1650 46 1 1.7876 -2.8828 1.0363 47 1 0.9266 -2.6343 -0.5016 48 1 2.6344 -3.1359 -0.5088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:22 Heat of formation + Delta-G solvation = 25.496654 kcal Electronic energy + Delta-G solvation = -27785.935826 eV Core-core repulsion = 24069.677085 eV Total energy + Delta-G solvation = -3716.258741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.86785 -40.11473 -38.01845 -34.79628 -33.95423 -33.38237 -32.59063 -31.91412 -30.06804 -29.81527 -28.43141 -26.29241 -25.52073 -24.23906 -22.70447 -22.04551 -20.76949 -20.28991 -20.16569 -18.88538 -17.76451 -17.66049 -16.96602 -16.15849 -15.61333 -15.20655 -14.87226 -14.42504 -14.23994 -14.07156 -13.95383 -13.73238 -13.42827 -13.27098 -13.22309 -12.96520 -12.77449 -12.74330 -12.51354 -12.23402 -12.12931 -12.05429 -11.71180 -11.55108 -11.05291 -10.94187 -10.90861 -10.75718 -10.41052 -10.23184 -9.99709 -9.89075 -9.86226 -9.53825 -9.46584 -8.90335 -8.84878 -8.77083 -7.18284 -5.73273 -3.08146 1.50753 1.90802 2.65540 3.29137 3.38923 3.41308 3.46738 3.47161 4.34421 4.42021 4.61821 4.68694 4.75713 4.86114 4.89426 5.05582 5.10896 5.15779 5.21534 5.29945 5.44175 5.53337 5.55692 5.57649 5.59180 5.63693 5.71964 5.72503 5.78980 5.84219 5.86232 6.03234 6.05037 6.13393 6.17431 6.23284 6.31344 6.39842 6.45238 6.53837 6.62428 6.76631 6.79678 6.85478 7.53842 7.81447 8.04086 8.33113 8.45918 9.25458 9.97662 10.18020 11.45461 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.003511 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.507479 B = 7972.019528 C = 9108.202939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.004 3.996 3 N -0.380 5.380 4 H 0.444 0.556 5 N -0.254 5.254 6 C -0.009 4.009 7 C 0.604 3.396 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.155 3.845 11 H 0.092 0.908 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.106 4.106 17 H 0.086 0.914 18 C 0.163 3.837 19 N -0.754 5.754 20 C -0.240 4.240 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.145 4.145 29 C -0.078 4.078 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.528 -4.228 -18.849 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 N -0.094 5.094 4 H 0.289 0.711 5 N -0.090 5.090 6 C -0.170 4.170 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.354 5.354 10 C 0.051 3.949 11 H 0.110 0.890 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.151 4.151 16 C -0.125 4.125 17 H 0.104 0.896 18 C 0.036 3.964 19 N -0.400 5.400 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.155 4.155 29 C -0.135 4.135 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.955 -4.142 -18.610 25.515 hybrid contribution 0.601 0.795 -0.445 1.091 sum -16.354 -3.348 -19.055 25.333 Atomic orbital electron populations 1.20328 0.86643 1.03758 1.03353 1.21193 0.95200 0.86968 1.08765 1.43184 1.02957 1.09453 1.53837 0.71124 1.73572 1.01592 1.14965 1.18836 1.21890 0.94998 0.89641 1.10452 1.16845 0.81667 0.86406 0.76249 1.90749 1.86725 1.12774 1.50722 1.45970 1.04837 1.11011 1.73613 1.20968 0.82849 0.94869 0.96242 0.89040 1.21910 1.01842 0.97674 0.95230 1.21492 0.98869 0.96620 0.98415 1.21583 0.98349 0.99564 0.96312 1.21560 1.02145 0.97217 0.94181 1.21680 0.97908 0.96737 0.96164 0.89616 1.20630 0.90961 0.95385 0.89398 1.42716 1.13681 1.70401 1.13219 1.19070 1.00949 1.29534 0.87494 0.89341 1.24666 0.97828 1.00749 0.96027 1.69705 1.31584 1.44717 1.12409 0.86551 0.84498 0.78010 0.79520 1.21123 1.21782 1.20292 1.20105 0.90668 0.96641 1.08102 1.20183 1.01124 0.89776 1.02435 0.90283 0.91218 0.89598 0.75637 0.90978 0.91515 0.92131 0.92434 0.92240 0.91974 0.92128 0.91022 0.95444 0.95542 0.80660 0.93129 0.91397 0.92203 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.26 36.01 0.37 -0.04 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.38 -3.53 6.83 33.50 0.23 -3.30 16 4 H 0.44 2.49 8.96 -190.44 -1.71 0.78 16 5 N -0.25 -3.23 11.92 33.42 0.40 -2.83 16 6 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 7 C 0.60 9.21 7.79 -12.39 -0.10 9.11 16 8 O -0.53 -9.11 14.78 5.30 0.08 -9.04 16 9 N -0.70 -9.87 3.61 -54.79 -0.20 -10.07 16 10 C 0.16 2.16 2.23 -67.93 -0.15 2.01 16 11 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 12 C -0.13 -1.53 5.60 -26.73 -0.15 -1.68 16 13 C -0.12 -1.28 5.77 -26.73 -0.15 -1.44 16 14 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 15 C -0.11 -1.60 4.90 -26.73 -0.13 -1.73 16 16 C -0.11 -1.61 2.02 -90.62 -0.18 -1.80 16 17 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 18 C 0.16 3.24 5.42 -4.04 -0.02 3.22 16 19 N -0.75 -18.13 5.13 -59.91 -0.31 -18.44 16 20 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 23 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 24 Si 0.88 22.34 27.73 -169.99 -4.71 17.63 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 28 C -0.15 -1.73 6.25 -104.40 -0.65 -2.38 16 29 C -0.08 -0.80 9.74 36.01 0.35 -0.45 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.37 7.30 -51.93 -0.38 -0.01 16 33 H 0.41 5.62 6.40 -40.82 -0.26 5.36 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.84 6.51 -51.93 -0.34 0.51 16 41 H 0.07 1.14 7.18 -51.92 -0.37 0.77 16 42 H 0.03 0.56 7.61 -51.93 -0.40 0.17 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.36 8.37 4.71 -40.82 -0.19 8.18 16 45 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.45 7.31 -51.93 -0.38 0.07 16 48 H 0.08 1.00 6.72 -51.93 -0.35 0.65 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -35.07 376.60 -9.46 -44.53 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -8.98 Total: 10.13 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.42 Total: -5.15 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.90 Total: -63.78 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.07 -9.46 -44.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.028 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds