Wall clock time and date at job start Tue Mar 31 2020 12:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35033 * 126.38802 * 2 1 4 4 H 0.97001 * 124.88719 * 359.97438 * 3 2 1 5 5 N 1.28471 * 110.23261 * 180.28139 * 3 2 1 6 6 C 1.31812 * 110.06874 * 359.73022 * 5 3 2 7 7 C 1.47708 * 126.51437 * 179.97438 * 6 5 3 8 8 O 1.21572 * 119.99920 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00411 * 0.05151 * 7 6 5 10 10 C 1.46495 * 119.99897 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47233 * 324.99171 * 10 9 7 12 12 C 1.52996 * 109.47323 * 84.99744 * 10 9 7 13 13 C 1.53009 * 109.47396 * 59.99501 * 12 10 9 14 14 C 1.53000 * 109.46782 * 60.00045 * 13 12 10 15 15 C 1.52996 * 109.47118 * 300.00125 * 14 13 12 16 16 C 1.53000 * 109.47570 * 60.00360 * 15 14 13 17 17 H 1.09005 * 109.47085 * 59.99278 * 16 15 14 18 18 C 1.52996 * 109.47570 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.46890 * 294.99673 * 18 16 15 20 20 C 1.36940 * 119.99845 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99796 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99882 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99919 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00056 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47296 * 89.99714 * 24 22 20 26 26 H 1.48501 * 109.47304 * 209.99525 * 24 22 20 27 27 H 1.48508 * 109.47389 * 329.99836 * 24 22 20 28 28 C 1.35363 * 126.38425 * 179.81594 * 2 1 3 29 29 C 1.50706 * 127.24805 * 0.02562 * 28 2 1 30 30 H 1.08995 * 109.47556 * 270.17886 * 1 2 3 31 31 H 1.09002 * 109.47055 * 30.18028 * 1 2 3 32 32 H 1.08994 * 109.47283 * 150.17434 * 1 2 3 33 33 H 0.97001 * 119.99773 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47470 * 179.97438 * 12 10 9 35 35 H 1.08998 * 109.47545 * 299.99663 * 12 10 9 36 36 H 1.08993 * 109.46785 * 300.00397 * 13 12 10 37 37 H 1.08999 * 109.47090 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46803 * 179.97438 * 14 13 12 39 39 H 1.09005 * 109.47077 * 59.99923 * 14 13 12 40 40 H 1.08995 * 109.47514 * 299.99743 * 15 14 13 41 41 H 1.09010 * 109.47225 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47297 * 54.99779 * 18 16 15 43 43 H 1.08998 * 109.46999 * 174.99923 * 18 16 15 44 44 H 0.97003 * 120.00128 * 0.02562 * 19 18 16 45 45 H 0.96998 * 119.99944 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.46953 * 269.70252 * 29 28 2 47 47 H 1.09000 * 109.47318 * 29.69850 * 29 28 2 48 48 H 1.09000 * 109.47161 * 149.70481 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 -0.0004 5 7 3.5420 0.7296 -0.0059 6 6 3.6320 -0.5855 -0.0043 7 6 4.8764 -1.3813 -0.0101 8 8 4.8212 -2.5957 -0.0082 9 7 6.0730 -0.7611 -0.0169 10 6 7.3071 -1.5505 -0.0221 11 1 7.1626 -2.4546 0.5694 12 6 7.6617 -1.9331 -1.4603 13 6 7.8646 -0.6640 -2.2906 14 6 9.0017 0.1634 -1.6878 15 6 8.6470 0.5460 -0.2495 16 6 8.4442 -0.7231 0.5807 17 1 9.3625 -1.3104 0.5768 18 6 8.0902 -0.3404 2.0192 19 7 9.2271 0.3481 2.6352 20 6 9.1419 0.7879 3.9293 21 1 8.2366 0.6268 4.4957 22 6 10.2194 1.4397 4.5132 23 7 10.1376 1.8620 5.7571 24 14 11.7854 1.7177 3.5335 25 1 11.7010 3.0195 2.8241 26 1 12.9499 1.7307 4.4549 27 1 11.9502 0.6238 2.5427 28 6 2.3100 -1.0897 0.0035 29 6 1.8853 -2.5357 0.0076 30 1 -0.3634 0.0032 1.0276 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8915 -0.5111 33 1 6.1170 0.2079 -0.0183 34 1 8.5802 -2.5201 -1.4642 35 1 6.8517 -2.5226 -1.8898 36 1 6.9464 -0.0768 -2.2867 37 1 8.1168 -0.9367 -3.3153 38 1 9.1465 1.0672 -2.2795 39 1 9.9199 -0.4240 -1.6915 40 1 7.7288 1.1333 -0.2456 41 1 9.4570 1.1359 0.1799 42 1 7.2233 0.3203 2.0165 43 1 7.8589 -1.2409 2.5882 44 1 10.0401 0.4931 2.1262 45 1 10.8904 2.3178 6.1650 46 1 1.7876 -2.8828 1.0363 47 1 0.9266 -2.6343 -0.5016 48 1 2.6344 -3.1359 -0.5088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:21 Heat of formation + Delta-G solvation = 1.230365 kcal Electronic energy + Delta-G solvation = -27786.988091 eV Core-core repulsion = 24069.677085 eV Total energy + Delta-G solvation = -3717.311006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.71889 -41.27984 -39.22624 -36.63446 -34.90360 -34.31084 -33.88249 -33.41003 -31.64478 -30.92647 -29.19096 -27.17376 -27.01238 -25.29376 -24.41348 -23.21989 -22.14549 -21.46665 -21.00716 -20.00707 -19.70229 -18.52065 -18.08859 -17.07833 -16.79365 -16.57713 -16.40150 -15.83064 -15.61171 -15.30859 -15.03659 -14.79937 -14.70290 -14.61690 -14.18496 -13.96923 -13.88054 -13.80995 -13.61867 -13.16295 -13.05923 -13.00198 -12.95775 -12.88477 -12.73402 -12.59779 -12.13696 -11.95075 -11.86447 -11.80776 -11.43834 -11.23478 -11.09027 -11.02458 -10.91176 -10.39363 -9.96279 -9.64209 -9.31884 -8.04677 -5.38816 0.51441 1.09276 1.36352 1.40952 1.48388 1.89249 2.26874 2.36708 2.47164 3.26244 3.37645 3.45209 3.74628 3.77444 3.81447 3.92432 4.06454 4.20840 4.28549 4.30837 4.36492 4.44065 4.47997 4.55326 4.65708 4.71519 4.75294 4.87518 4.90156 4.92722 4.99537 5.04810 5.06867 5.09484 5.14516 5.24013 5.24597 5.27931 5.32201 5.41043 5.48397 5.56297 5.60064 5.72224 6.12570 6.18913 6.47024 6.87391 7.05629 7.18338 7.80168 8.02640 9.17240 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.003511 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.507479 B = 7972.019528 C = 9108.202939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.024 3.976 3 N -0.366 5.366 4 H 0.460 0.540 5 N -0.274 5.274 6 C -0.040 4.040 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.698 5.698 10 C 0.158 3.842 11 H 0.073 0.927 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.092 4.092 17 H 0.094 0.906 18 C 0.164 3.836 19 N -0.752 5.752 20 C -0.238 4.238 21 H 0.048 0.952 22 C -0.064 4.064 23 N -0.985 5.985 24 Si 0.959 3.041 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.248 1.248 28 C -0.175 4.175 29 C -0.072 4.072 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.408 0.592 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.010 0.990 44 H 0.369 0.631 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -3.743 -21.776 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.083 5.083 4 H 0.308 0.692 5 N -0.111 5.111 6 C -0.199 4.199 7 C 0.384 3.616 8 O -0.439 6.439 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.111 4.111 17 H 0.112 0.888 18 C 0.038 3.962 19 N -0.398 5.398 20 C -0.369 4.369 21 H 0.066 0.934 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.172 1.172 28 C -0.185 4.185 29 C -0.130 4.130 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.028 0.972 44 H 0.203 0.797 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.251 -3.654 -21.582 27.870 hybrid contribution 0.506 0.667 0.554 1.004 sum -16.745 -2.987 -21.028 27.046 Atomic orbital electron populations 1.20531 0.83230 1.05612 1.04604 1.21761 0.96926 0.85754 1.05766 1.43316 1.02158 1.10594 1.52232 0.69175 1.73488 1.03355 1.14510 1.19782 1.21864 0.95246 0.90318 1.12518 1.17135 0.82379 0.86325 0.75728 1.90719 1.87200 1.13849 1.52100 1.45956 1.04773 1.10984 1.73279 1.20920 0.82340 0.93804 0.97576 0.90849 1.21850 1.02211 0.98407 0.93416 1.21456 0.98462 0.95709 0.99179 1.21535 0.98766 1.00433 0.94274 1.21542 1.01585 0.96063 0.95778 1.21542 0.98624 0.97814 0.93120 0.88794 1.20702 0.89512 0.93913 0.92073 1.42632 1.15130 1.70397 1.11620 1.19001 0.99550 1.29186 0.89197 0.93417 1.25562 1.01942 1.00801 0.97224 1.69901 1.32898 1.46075 1.14686 0.85357 0.78823 0.79042 0.78283 1.19983 1.22175 1.17249 1.20439 0.90379 0.98083 1.09631 1.20138 1.01860 0.88764 1.02213 0.89156 0.88727 0.88408 0.75497 0.89479 0.92211 0.92783 0.90404 0.90797 0.90989 0.92329 0.92429 0.96304 0.97234 0.79723 0.93250 0.91857 0.89167 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.26 71.24 0.73 0.18 16 2 C 0.02 0.40 7.23 41.40 0.30 0.70 16 3 N -0.37 -6.33 6.83 -47.93 -0.33 -6.65 16 4 H 0.46 4.28 8.96 -219.99 -1.97 2.30 16 5 N -0.27 -6.97 11.92 -48.18 -0.57 -7.55 16 6 C -0.04 -1.14 7.13 42.45 0.30 -0.84 16 7 C 0.60 19.02 7.79 86.75 0.68 19.70 16 8 O -0.56 -20.10 14.78 -3.94 -0.06 -20.16 16 9 N -0.70 -20.14 3.61 -445.53 -1.61 -21.75 16 10 C 0.16 4.40 2.23 44.99 0.10 4.50 16 11 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 12 C -0.12 -2.69 5.60 30.60 0.17 -2.52 16 13 C -0.11 -2.16 5.77 30.60 0.18 -1.98 16 14 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 15 C -0.11 -2.98 4.90 30.59 0.15 -2.83 16 16 C -0.09 -2.74 2.02 -10.79 -0.02 -2.76 16 17 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 18 C 0.16 6.66 5.42 86.38 0.47 7.13 16 19 N -0.75 -36.22 5.13 -343.46 -1.76 -37.98 16 20 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 21 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 22 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 23 N -0.99 -64.66 13.97 21.65 0.30 -64.35 16 24 Si 0.96 45.86 27.73 68.60 1.90 47.76 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 28 C -0.18 -4.12 6.25 -19.72 -0.12 -4.24 16 29 C -0.07 -1.49 9.74 71.24 0.69 -0.79 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.10 0.49 7.30 -2.39 -0.02 0.47 16 33 H 0.41 11.51 6.40 -92.71 -0.59 10.91 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.06 1.58 6.51 -2.39 -0.02 1.56 16 41 H 0.06 1.72 7.18 -2.38 -0.02 1.70 16 42 H 0.02 0.80 7.61 -2.39 -0.02 0.78 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.37 16.54 4.71 -92.71 -0.44 16.10 16 45 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 1.22 7.31 -2.39 -0.02 1.20 16 48 H 0.06 1.51 6.72 -2.39 -0.02 1.49 16 Total: -1.00 -79.19 376.60 0.96 -78.23 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -2.07 Total: 35.01 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.15 Total: -2.56 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -3.97 Total: -138.28 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -79.19 0.96 -78.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.458 kcal (2) G-P(sol) polarization free energy of solvation -79.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds